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Gene CDX1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
49 supporting clones for gene CDX1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001804.2   .a 1 to 1772 1 to 1772 exact RefSeq,   1772/1772
(100 %)
0 diff
(100 %id)
BM793967 Ascites, stomach .a 15 to 269 1 to 255   tiling clone,   255/255
(100 %)
7 diff
(97.3 %id)
AF239666   .a 16 to 957 1 to 942 exact tiling clone,   942/942
(100 %)
0 diff
(100 %id)
U51095 colocarcinoma .a 16 to 1714 1 to 1699 Q28A A29N     1699/1699
(100 %)
11 diff
(99.4 %id)
U15212 small intestine .a 283 to 1540 1 to 1259       1259/1262
(99 %)
4 diff
(99.7 %id)
BQ324885 colon_ins .a 473 to 720 268 to 22       247/268
(92 %)
1 diff
(99.7 %id)
BQ083083 Ascites, stomach .a 558 to 983 1 to 426       426/426
(100 %)
2 diff
(99.6 %id)
BP223395 colon mucosa .a 579 to 1175 1 to 597       597/605
(98 %)
1 diff
(99.9 %id)
BP330568 rectum .a 618 to 1181 1 to 565       565/596
(94 %)
7 diff
(98.9 %id)
BM823903 Ascites, stomach .a 635 to 1171 1 to 537       537/537
(100 %)
0 diff
(100 %id)
BM853012 Ascites, stomach .a 635 to 976 1 to 342       342/342
(100 %)
6 diff
(98.3 %id)
BM797713 Ascites, stomach .a 636 to 1028 1 to 393       393/393
(100 %)
0 diff
(100 %id)
BM852896 Ascites, stomach .a 712 to 1170 1 to 459       459/459
(100 %)
1 diff
(99.8 %id)
BM795963 Ascites, stomach .a 730 to 1182 1 to 453       453/453
(100 %)
6 diff
(98.7 %id)
BM791953 Ascites, stomach .a 740 to 1313 1 to 574       574/574
(100 %)
2 diff
(99.7 %id)
BM793162 Ascites, stomach .a 741 to 1316 1 to 575       575/575
(100 %)
3 diff
(99.5 %id)
BM789423 Ascites, stomach .a 751 to 1154 1 to 404       404/404
(100 %)
0 diff
(100 %id)
BM826857 Ascites, stomach .a 753 to 1031 1 to 280       280/280
(100 %)
7 diff
(97.5 %id)
AW860310 colon .a 844 to 1441 602 to 1   tiling clone,   602/602
(100 %)
5 diff
(99.2 %id)
BF374355 stomach .a 844 to 1230 383 to 1       383/383
(100 %)
0 diff
(100 %id)
BM826225 Ascites, stomach .a 948 to 1375 1 to 429       429/429
(100 %)
4 diff
(99.1 %id)
T24589   .a 1105 to 1286 1 to 180       180/180
(100 %)
2 diff
(98.9 %id)
AA308610 colon .a 1152 to 1632 1 to 481       481/481
(100 %)
4 diff
(99.2 %id)
BM987602 mixed .a 1225 to 1711 505 to 19   AAA   487/487
(100 %)
3 diff
(99.4 %id)
AA936503 pooled .a 1248 to 1703 456 to 1   tiling clone,   456/456
(100 %)
3 diff
(99.4 %id)
BF062643 colon, colon tumor, RER+ .a 1256 to 1772 517 to 1       517/517
(100 %)
3 diff
(99.5 %id)
BF594431 colon, colon tumor, RER+ .a 1274 to 1772 500 to 3       498/500
(99 %)
0 diff
(100 %id)
AI821214 colon .a 1281 to 1751 1 to 471       471/471
(100 %)
1 diff
(99.8 %id)
AW272649 colon, moderately-differentiated adenocarcinoma .a 1288 to 1766 479 to 1       479/479
(100 %)
1 diff
(99.8 %id)
AA858341 colon, colon tumor .a 1301 to 1766 466 to 1       466/466
(100 %)
2 diff
(99.6 %id)
AA568897 colon, colon tumor RER+ .a 1303 to 1710 408 to 1       408/408
(100 %)
2 diff
(99.6 %id)
AI732197 colon .a 1314 to 1769 458 to 3       456/458
(99 %)
0 diff
(100 %id)
AI807048 pooled .a 1329 to 1769 442 to 2       441/442
(99 %)
0 diff
(100 %id)
AI911156 pooled .a 1370 to 1769 406 to 7       400/406
(98 %)
0 diff
(100 %id)
AA470673 colon .a 1407 to 1771 365 to 1       365/365
(100 %)
3 diff
(99.2 %id)
AI915116 colon, colon tumor, RER+ .a 1420 to 1771 353 to 1   tiling clone,   353/353
(100 %)
1 diff
(99.8 %id)
AW009320 colon .a 1482 to 1772 293 to 3   tiling clone,   291/293
(99 %)
0 diff
(100 %id)
AA527480 colon .a 1526 to 1764 252 to 14   AAA   239/239
(100 %)
1 diff
(99.6 %id)
BF594343 colon, colon tumor, RER+ .a 1542 to 1708 168 to 2       167/168
(99 %)
0 diff
(100 %id)
AW182922 pooled .a 1545 to 1769 226 to 2       225/226
(99 %)
0 diff
(100 %id)
BC096252 PCR rescued clones Gene CDX1, variant not shown         Suspected internal deletion, this clone was ignored    
BC127122 PCR rescued clones Gene CDX1, variant not shown         Suspected internal deletion, this clone was ignored    
BX282595 colon, colon tumor, RER+ Gene CDX1, variant not shown         Suspected internal deletion, this clone was ignored    
AI738580 colon, colon tumor, RER+ Gene CDX1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BF510316   Gene CDX1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BC096249 PCR rescued clones Gene CDX1, variant not shown         Suspected internal deletion, this clone was ignored    
BC096250 PCR rescued clones Gene CDX1, variant not shown         Suspected internal deletion, this clone was ignored    
BC096251 PCR rescued clones Gene CDX1, variant not shown         Suspected internal deletion, this clone was ignored    
BC127121 PCR rescued clones Gene CDX1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DCI