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Gene CDKN2DTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
166 supporting clones for gene CDKN2D back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG719545 testis .a 1 to 747 1 to 747 Q2E tiling clone,   747/747
(100 %)
7 diff
(99.1 %id)
DB441977 testis .a 27 to 460 1 to 433       433/433
(100 %)
6 diff
(98.7 %id)
TI_44344289   .a 77 to 963 75 to 953       879/953
(92 %)
22 diff
(97.7 %id)
BI669755 brain, hypothalamus .a 81 to 963 1 to 875       875/875
(100 %)
20 diff
(97.8 %id)
DT218256 brain .a 86 to 679 1 to 594       594/594
(100 %)
1 diff
(99.9 %id)
DB459173 testis .a 86 to 569 1 to 484       484/484
(100 %)
1 diff
(99.8 %id)
DB497700 hypothalamus .a 86 to 594 1 to 509       509/509
(100 %)
1 diff
(99.9 %id)
DB504691 hypothalamus .a 86 to 557 1 to 472       472/472
(100 %)
1 diff
(99.8 %id)
NM_079421.2   .a 86 to 1229 1 to 1144   RefSeq, AAA   1144/1144
(100 %)
1 diff
(100.0 %id)
BM563048 brain, medulla .a 88 to 1037 28 to 994       967/1077
(89 %)
36 diff
(96.7 %id)
BM505097 Pancreas, Purified pancreatic islet .a 91 to 627 1 to 537       537/538
(99 %)
5 diff
(99.1 %id)
BI818887 pooled brain, lung, testis .a 97 to 975 1 to 890       890/890
(100 %)
25 diff
(97.2 %id)
BI523657 pooled lung and spleen .a 97 to 726 1 to 636       636/640
(99 %)
21 diff
(96.8 %id)
TI_57199864   .a 97 to 975 69 to 958       890/958
(92 %)
31 diff
(96.8 %id)
BF203925 muscle, rhabdomyosarcoma .a 101 to 641 1 to 539       539/539
(100 %)
4 diff
(99.3 %id)
BC001822 Muscle, rhabdomyosarcoma .a 102 to 1229 1 to 1128   tiling clone, available from MGC, AAA   1128/1128
(100 %)
1 diff
(100.0 %id)
BI838053 pooled pancreas and spleen .a 113 to 1040 1 to 928       927/933
(99 %)
38 diff
(96.0 %id)
TI_57165441   .a 113 to 1040 62 to 994       937/999
(93 %)
40 diff
(96.0 %id)
BE299378 muscle, rhabdomyosarcoma .a 117 to 772 49 to 720       673/812
(82 %)
40 diff
(95.1 %id)
BQ881787 brain, neuroblastoma, cell line .a 117 to 1015 9 to 910       903/917
(98 %)
21 diff
(97.8 %id)
BI823361 pooled brain, lung, testis .a 118 to 773 14 to 706       644/940
(68 %)
12 diff
(98.8 %id)
TI_57202878   .a 118 to 773 40 to 732       644/966
(66 %)
12 diff
(98.8 %id)
CR614055 T cells (Jurkat cell line) Cot10-normalized .a 119 to 1195 1 to 1078   tiling clone,   1078/1078
(100 %)
1 diff
(100.0 %id)
BX383370   .a 119 to 626 1 to 502   fully sequenced,   502/502
(100 %)
2 diff
(99.7 %id)
BE295116 muscle, rhabdomyosarcoma .a 121 to 752 1 to 652       652/653
(99 %)
34 diff
(94.8 %id)
DN994448 brain, whole brain .a 128 to 792 32 to 695       664/695
(95 %)
7 diff
(99.0 %id)
BM926028 brain .a 130 to 790 12 to 672       661/1202
(54 %)
18 diff
(98.6 %id)
CR542158   .a 134 to 631 1 to 498       498/498
(100 %)
1 diff
(99.8 %id)
CV026098 mixed .a 134 to 633 1 to 500       500/539
(92 %)
2 diff
(99.7 %id)
TI_1948144754   .a 134 to 633 635 to 134       502/1392
(36 %)
20 diff
(98.6 %id)
U20498 thymus .a 134 to 839 1 to 706       706/706
(100 %)
8 diff
(98.9 %id)
AA449250   .a 136 to 381 1 to 246     Submitted on the opposite strand 246/247
(99 %)
7 diff
(97.2 %id)
AI073832 pooled .a 136 to 307 1 to 172     Submitted on the opposite strand 172/172
(100 %)
8 diff
(95.4 %id)
AI261497 adenocarcinoma, colon .a 136 to 222 1 to 87     Submitted on the opposite strand 87/88
(98 %)
1 diff
(98.9 %id)
CT003293 T-Lymphocytes .a 137 to 768 1 to 633       633/642
(98 %)
2 diff
(99.7 %id)
CR989860 T-Lymphocytes .a 137 to 653 1 to 517       517/520
(99 %)
2 diff
(99.7 %id)
CR981360 T-Lymphocytes .a 137 to 582 1 to 449       449/460
(97 %)
21 diff
(95.5 %id)
R77517 placenta .a 187 to 501 1 to 315     Submitted on the opposite strand 315/322
(97 %)
2 diff
(99.4 %id)
BE297469 muscle, rhabdomyosarcoma .a 201 to 823 1 to 616       616/645
(95 %)
22 diff
(96.6 %id)
AA297107 brain, cerebellum .a 210 to 503 1 to 294       294/294
(100 %)
2 diff
(99.4 %id)
BE830824 marrow .a 245 to 618 1 to 382       382/384
(99 %)
13 diff
(96.7 %id)
BE830834 marrow .a 245 to 645 1 to 401       401/401
(100 %)
6 diff
(98.6 %id)
BX383369   .a 596 to 1195 600 to 1   fully sequenced,   600/600
(100 %)
6 diff
(99.0 %id)
DB482331 hippocampus .b 1 to 500 1 to 500   tiling clone,   500/500
(100 %)
1 diff
(99.8 %id)
BI462387 testis .b 21 to 854 1 to 835 R18G G19A D20T V21C Q22R ...     835/835
(100 %)
21 diff
(97.5 %id)
NM_001800.3   .b 24 to 1421 1 to 1398 exact RefSeq, AAA   1398/1398
(100 %)
1 diff
(100.0 %id)
BG773540 testis .b 36 to 722 1 to 687       687/687
(100 %)
3 diff
(99.6 %id)
BG723573 testis .b 40 to 820 1 to 793       793/808
(98 %)
22 diff
(97.3 %id)
DB504980 hypothalamus .b 66 to 544 1 to 480       480/480
(100 %)
11 diff
(97.8 %id)
DB471368 hippocampus .b 141 to 636 1 to 496       496/496
(100 %)
1 diff
(99.8 %id)
TI_44345545   .b 148 to 691 82 to 637       556/845
(65 %)
23 diff
(97.3 %id)
BI668839 brain, hypothalamus .b 160 to 691 1 to 544       544/752
(72 %)
30 diff
(96.1 %id)
DB494792 hypothalamus .b 166 to 655 1 to 490       490/490
(100 %)
2 diff
(99.6 %id)
DB500077 hypothalamus .b 166 to 670 1 to 505       505/505
(100 %)
4 diff
(99.3 %id)
BG536611 lung .b 178 to 812 1 to 639       639/651
(98 %)
24 diff
(96.4 %id)
U40343   .b 192 to 1422 8 to 1240 exact AAA   1233/1240
(99 %)
10 diff
(99.2 %id)
AI057178 B-cell, chronic lymphotic leukemia .b 218 to 739 1 to 522     Submitted on the opposite strand 522/522
(100 %)
2 diff
(99.7 %id)
AI221498 pooled .b 218 to 751 1 to 534     Submitted on the opposite strand 534/537
(99 %)
10 diff
(98.2 %id)
AI280899 adenocarcinoma, colon .b 218 to 775 1 to 558     Submitted on the opposite strand 558/558
(100 %)
2 diff
(99.7 %id)
AI268736 carcinoid, lung .b 218 to 686 1 to 469     Submitted on the opposite strand 469/471
(99 %)
3 diff
(99.4 %id)
AI383407 B-cell, chronic lymphotic leukemia .b 218 to 513 1 to 297     Submitted on the opposite strand 297/297
(100 %)
2 diff
(99.4 %id)
AI540069 B-cell, chronic lymphotic leukemia .b 218 to 735 1 to 518     Submitted on the opposite strand 518/519
(99 %)
5 diff
(99.1 %id)
AI401012 B-cell, chronic lymphotic leukemia .b 218 to 728 1 to 510     Submitted on the opposite strand 510/510
(100 %)
2 diff
(99.7 %id)
AI401296 B-cell, chronic lymphotic leukemia .b 218 to 848 1 to 641 H119S T120H A121C V122C V123G ...   Submitted on the opposite strand 641/641
(100 %)
21 diff
(96.8 %id)
AI499733 anaplastic oligodendroglioma, brain .b 218 to 805 1 to 588     Submitted on the opposite strand 588/588
(100 %)
7 diff
(98.9 %id)
AI916967 pooled germ cell tumors .b 218 to 738 1 to 522     Submitted on the opposite strand 522/522
(100 %)
4 diff
(99.3 %id)
AI690174 carcinoid, lung .b 218 to 823 1 to 606     Submitted on the opposite strand 606/606
(100 %)
7 diff
(98.9 %id)
AI798040 B-cell, chronic lymphotic leukemia .b 218 to 823 1 to 606     Submitted on the opposite strand 606/606
(100 %)
4 diff
(99.4 %id)
BE856272 brain, glioblastoma (pooled) .b 218 to 823 1 to 606     Submitted on the opposite strand 606/606
(100 %)
2 diff
(99.7 %id)
BE855885 brain, glioblastoma (pooled) .b 218 to 819 1 to 603     Submitted on the opposite strand 603/603
(100 %)
2 diff
(99.7 %id)
AI095201 B-cell, chronic lymphotic leukemia .b 219 to 711 1 to 483     Submitted on the opposite strand 483/483
(100 %)
29 diff
(94.0 %id)
AW016510   .b 219 to 602 1 to 384     Submitted on the opposite strand 384/384
(100 %)
2 diff
(99.5 %id)
AI703354 carcinoid, lung .b 227 to 823 1 to 597     Submitted on the opposite strand 597/597
(100 %)
7 diff
(98.9 %id)
AW169901 pooled .b 231 to 763 1 to 533     Submitted on the opposite strand 533/533
(100 %)
12 diff
(97.8 %id)
BE675345 B-cell, chronic lymphotic leukemia .b 241 to 823 1 to 583     Submitted on the opposite strand 583/583
(100 %)
3 diff
(99.5 %id)
AI970759 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 248 to 659 1 to 410     Submitted on the opposite strand 410/410
(100 %)
4 diff
(99.1 %id)
AA488210 whole brain .b 259 to 606 1 to 344     Submitted on the opposite strand 344/345
(99 %)
11 diff
(96.9 %id)
AI268122 carcinoid, lung .b 259 to 682 1 to 424     Submitted on the opposite strand 424/424
(100 %)
4 diff
(99.1 %id)
AI762172 B-cell, chronic lymphotic leukemia .b 259 to 732 1 to 475     Submitted on the opposite strand 475/475
(100 %)
2 diff
(99.6 %id)
AI656826 pooled germ cell tumors .b 264 to 819 1 to 557     Submitted on the opposite strand 557/557
(100 %)
3 diff
(99.5 %id)
AI824257 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 267 to 369 1 to 103     Submitted on the opposite strand 103/103
(100 %)
0 diff
(100 %id)
U49399 bone marrow .b 272 to 826 1 to 555 exact     555/555
(100 %)
1 diff
(99.9 %id)
BM142217 Islets of Langerhans, Pancreas .b 273 to 823 1 to 551   tiling clone,   551/551
(100 %)
1 diff
(99.9 %id)
DN991271 brain, whole brain .b 283 to 949 1 to 666 I157X G160A H161T M162W V163W ...     666/666
(100 %)
6 diff
(99.1 %id)
BF446629 carcinoid, lung .b 293 to 811 1 to 520     Submitted on the opposite strand 520/528
(98 %)
19 diff
(96.5 %id)
BI524811 pooled lung and spleen .b 464 to 1368 916 to 1       916/960
(95 %)
39 diff
(96.0 %id)
TI_44159207   .b 464 to 1368 916 to 1       916/960
(95 %)
39 diff
(96.0 %id)
W47468 senescent fibroblast .b 480 to 750 270 to 2     Submitted on the opposite strand 269/270
(99 %)
0 diff
(100 %id)
AA479879   .b 546 to 794 249 to 1       249/250
(99 %)
5 diff
(98.0 %id)
BM043936 carcinoma, cell line, Prostate .b 548 to 1233 1 to 704       704/706
(99 %)
45 diff
(93.7 %id)
TI_149311313   .b 550 to 1423 951 to 100   AAA   852/938
(90 %)
38 diff
(96.0 %id)
BM272940 insulinoma, Pancreas .b 552 to 1032 1 to 481       481/481
(100 %)
8 diff
(98.4 %id)
BM272976 insulinoma, Pancreas .b 552 to 926 1 to 375       375/375
(100 %)
8 diff
(97.9 %id)
BM894290 insulinoma, Pancreas .b 552 to 981 1 to 430       430/430
(100 %)
5 diff
(98.9 %id)
BU077705 insulinoma, Pancreas .b 552 to 914 1 to 363   fully sequenced,   363/363
(100 %)
5 diff
(98.7 %id)
BU542469 carcinoma, cell line, Prostate .b 552 to 1423 1 to 878   AAA   878/878
(100 %)
11 diff
(98.8 %id)
FN105037 breast carcinoma .b 610 to 698 87 to 1     Submitted on the opposite strand 87/88
(98 %)
5 diff
(94.4 %id)
BU689358 lung .b 692 to 1423 744 to 17   tiling clone, AAA   728/728
(100 %)
4 diff
(99.5 %id)
BX119714 placenta .b 706 to 1423 731 to 15   AAA   717/717
(100 %)
1 diff
(99.9 %id)
AW950323   .b 728 to 1424 705 to 2     Submitted on the opposite strand 704/706
(99 %)
0 diff
(100 %id)
BE717887 head_neck .b 750 to 974 240 to 16       225/261
(86 %)
0 diff
(100 %id)
BQ637763 eye, retina .b 778 to 1396 623 to 6     Submitted on the opposite strand 618/623
(99 %)
0 diff
(100 %id)
CA424868 cell lines, Chondrosarcoma .b 799 to 1421 641 to 19   AAA   623/623
(100 %)
1 diff
(99.9 %id)
CK824084 insulinoma, Pancreas .b 808 to 1413 606 to 1       606/606
(100 %)
0 diff
(100 %id)
CB141879 Liver .b 809 to 1147 1 to 339       339/339
(100 %)
7 diff
(98.0 %id)
BF359711 marrow .b 817 to 1300 1 to 484       484/487
(99 %)
17 diff
(96.6 %id)
BM272696 insulinoma, Pancreas .b 818 to 1419 604 to 3       602/604
(99 %)
0 diff
(100 %id)
BM894022 insulinoma, Pancreas .b 831 to 1419 591 to 3       589/591
(99 %)
0 diff
(100 %id)
BU077480 insulinoma, Pancreas .b 884 to 1421 538 to 1   fully sequenced,   538/538
(100 %)
2 diff
(99.7 %id)
DB540104 hippocampus .b 900 to 1421 1 to 521     Submitted on the opposite strand 521/521
(100 %)
1 diff
(99.9 %id)
BM272734 insulinoma, Pancreas .b 901 to 1388 488 to 1       488/488
(100 %)
0 diff
(100 %id)
BM142409 Islets of Langerhans, Pancreas .b 901 to 1421 531 to 11   AAA   521/521
(100 %)
0 diff
(100 %id)
AI358864 brain, glioblastoma (pooled) .b 920 to 1421 504 to 1       504/504
(100 %)
7 diff
(98.7 %id)
BM505487 insulinoma, Pancreas .b 925 to 1298 496 to 123   AAA   374/400
(93 %)
0 diff
(100 %id)
AA835804 brain, substantia nigra .b 937 to 1421 483 to 1       483/483
(100 %)
2 diff
(99.6 %id)
DB575941 hypothalamus .b 938 to 1421 1 to 484     Submitted on the opposite strand 484/484
(100 %)
1 diff
(99.8 %id)
DB551192 hippocampus .b 939 to 1421 1 to 483     Submitted on the opposite strand 483/483
(100 %)
2 diff
(99.6 %id)
DB568800 hypothalamus .b 940 to 1425 1 to 487   tiling clone, Submitted on the opposite strand 487/487
(100 %)
7 diff
(98.6 %id)
DB571223 hypothalamus .b 942 to 1421 1 to 480     Submitted on the opposite strand 480/480
(100 %)
1 diff
(99.8 %id)
AI421483 brain, glioblastoma (pooled) .b 942 to 1421 481 to 1       481/481
(100 %)
2 diff
(99.6 %id)
DB565843 hypothalamus .b 958 to 1421 1 to 464     Submitted on the opposite strand 464/464
(100 %)
1 diff
(99.8 %id)
AA808152 germinal center B cell .b 966 to 1418 461 to 11   AAA   451/456
(98 %)
1 diff
(99.8 %id)
DB575102 hypothalamus .b 977 to 1421 1 to 444     Submitted on the opposite strand 444/444
(100 %)
4 diff
(99.1 %id)
AA017483 eye, retina .b 983 to 1422 443 to 1     Submitted on the opposite strand 443/443
(100 %)
9 diff
(98.0 %id)
AA522957 Ewing's sarcoma .b 983 to 1422 446 to 8       439/518
(84 %)
0 diff
(100 %id)
BE467559 carcinoid, lung .b 1010 to 1419 1 to 410     Submitted on the opposite strand 410/416
(98 %)
4 diff
(99.1 %id)
BE503625 carcinoid, lung .b 1010 to 1403 1 to 394     Submitted on the opposite strand 394/394
(100 %)
1 diff
(99.8 %id)
BE504281 carcinoid, lung .b 1012 to 1412 1 to 401     Submitted on the opposite strand 401/401
(100 %)
0 diff
(100 %id)
BF513380   .b 1018 to 1336 14 to 332     Submitted on the opposite strand 319/342
(93 %)
2 diff
(99.5 %id)
BI057135 placenta_normal .b 1024 to 1412 390 to 1       390/390
(100 %)
6 diff
(98.5 %id)
BF901943 marrow .b 1025 to 1412 389 to 1     Submitted on the opposite strand 389/389
(100 %)
5 diff
(98.8 %id)
DB576247 hypothalamus .b 1028 to 1421 1 to 395   AAA Submitted on the opposite strand 395/395
(100 %)
3 diff
(99.3 %id)
AA805777 germinal center B cell .b 1031 to 1419 395 to 10       386/395
(97 %)
0 diff
(100 %id)
BQ335245 marrow .b 1032 to 1383 1 to 352       352/352
(100 %)
12 diff
(96.6 %id)
BI030217 marrow .b 1033 to 1323 13 to 312       300/312
(96 %)
6 diff
(98.1 %id)
BI030228 marrow .b 1033 to 1387 25 to 379       355/379
(93 %)
6 diff
(98.5 %id)
BF901928 marrow .b 1035 to 1328 1 to 294       294/301
(97 %)
3 diff
(99.1 %id)
BF901939 marrow .b 1035 to 1275 1 to 241       241/241
(100 %)
0 diff
(100 %id)
BF901942 marrow .b 1035 to 1247 1 to 213       213/213
(100 %)
0 diff
(100 %id)
BF902206 marrow .b 1035 to 1412 377 to 1     Submitted on the opposite strand 377/377
(100 %)
2 diff
(99.5 %id)
BF902744 marrow .b 1035 to 1429 1 to 396       396/411
(96 %)
9 diff
(97.9 %id)
BF902747 marrow .b 1035 to 1412 378 to 1     Submitted on the opposite strand 378/378
(100 %)
0 diff
(100 %id)
BF902750 marrow .b 1035 to 1412 1 to 378       378/378
(100 %)
0 diff
(100 %id)
BF933034 nervous_tumor .b 1035 to 1324 1 to 290       290/290
(100 %)
1 diff
(99.7 %id)
BI028054 marrow .b 1035 to 1412 378 to 1       378/378
(100 %)
0 diff
(100 %id)
BI028441 marrow .b 1035 to 1412 379 to 1       379/379
(100 %)
7 diff
(98.2 %id)
BI028447 marrow .b 1035 to 1424 1 to 390       390/390
(100 %)
3 diff
(99.3 %id)
BI028454 marrow .b 1035 to 1424 1 to 390       390/392
(99 %)
3 diff
(99.3 %id)
BI028456 marrow .b 1035 to 1412 378 to 1       378/378
(100 %)
1 diff
(99.8 %id)
BI030509 marrow .b 1035 to 1419 1 to 385       385/387
(99 %)
3 diff
(99.3 %id)
BI031174 marrow .b 1035 to 1368 1 to 334       334/334
(100 %)
0 diff
(100 %id)
BQ335209 marrow .b 1035 to 1258 1 to 224       224/224
(100 %)
7 diff
(96.9 %id)
AA297094 brain, cerebellum .b 1036 to 1420 389 to 3     Submitted on the opposite strand 387/389
(99 %)
0 diff
(100 %id)
AA743133 germinal center B cell .b 1052 to 1418 376 to 13   AAA   364/368
(98 %)
3 diff
(99.2 %id)
AA018325 eye, retina .b 1053 to 1422 378 to 1     Submitted on the opposite strand 378/419
(90 %)
12 diff
(97.2 %id)
BI030241 marrow .b 1059 to 1412 353 to 1       353/353
(100 %)
4 diff
(98.9 %id)
AW303621 pooled .b 1064 to 1419 356 to 1       356/356
(100 %)
2 diff
(99.5 %id)
AW025842 pooled germ cell tumors .b 1075 to 1422 348 to 1       348/356
(97 %)
0 diff
(100 %id)
BM504773 Pancreas, Purified pancreatic islet .b 1098 to 1420 337 to 15   AAA   323/323
(100 %)
7 diff
(97.9 %id)
AA013033 eye, retina .b 1098 to 1422 330 to 1     Submitted on the opposite strand 330/389
(84 %)
6 diff
(98.5 %id)
BF901940 marrow .b 1107 to 1412 307 to 1     Submitted on the opposite strand 307/307
(100 %)
2 diff
(99.4 %id)
BI028539 marrow .b 1114 to 1412 299 to 1       299/299
(100 %)
3 diff
(99.0 %id)
EL946907 eyeball .b 1125 to 1380 8 to 262       255/262
(97 %)
6 diff
(97.8 %id)
EH342164   .b 1278 to 1357 1 to 79       79/79
(100 %)
1 diff
(98.8 %id)
FN090679 breast carcinoma .b 1300 to 1383 84 to 1     Submitted on the opposite strand 84/86
(97 %)
0 diff
(100 %id)
EC534032 Prostate .b 1343 to 1422 1 to 78       78/79
(98 %)
3 diff
(96.3 %id)
EC536948 Prostate .b 1354 to 1420 1 to 66       66/70
(94 %)
2 diff
(97.2 %id)
BI030501 marrow Gene CDKN2D, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI