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Gene CDKN2CTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
306 supporting clones for gene CDKN2C back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BE831176 marrow .a 1 to 523 1 to 523   tiling clone,   523/523
(100 %)
7 diff
(98.7 %id)
NM_078626.2   .a 29 to 1301 1 to 1273 exact RefSeq,   1273/1273
(100 %)
0 diff
(100 %id)
BU657146 blood .a 276 to 601 12 to 337       326/337
(96 %)
6 diff
(98.3 %id)
BU657147 blood .a 276 to 722 12 to 458       447/458
(97 %)
7 diff
(98.5 %id)
DA917255 small intestine .a 287 to 859 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
BM148130 leukopheresis .a 298 to 766 1 to 469       469/469
(100 %)
9 diff
(98.1 %id)
BU963702 mixed (pool of 40 RNAs) .a 301 to 898 1 to 599       599/634
(94 %)
9 diff
(98.6 %id)
DA894972 skeletal muscle .a 305 to 865 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
BU660176 blood .a 309 to 763 1 to 455       455/455
(100 %)
0 diff
(100 %id)
BG249393 hypernephroma, cell line, Kidney .a 312 to 977 1 to 672 D17T L18*     672/958
(70 %)
37 diff
(96.2 %id)
BM835573 stomach .a 313 to 879 1 to 567       567/567
(100 %)
2 diff
(99.7 %id)
BX101656 melanocyte .a 322 to 1011 1 to 692 E151G V152G V153C S154*     692/695
(99 %)
3 diff
(99.6 %id)
W00390 melanocyte .a 322 to 806 1 to 492       492/493
(99 %)
12 diff
(97.6 %id)
U17074   .a 335 to 934 1 to 600 exact     600/600
(100 %)
0 diff
(100 %id)
BM727816 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 335 to 680 1 to 346   fully sequenced,   346/346
(100 %)
0 diff
(100 %id)
CD635751   .a 341 to 479 1 to 139       139/159
(87 %)
5 diff
(96.9 %id)
CA454024   .a 349 to 1222 1 to 878 exact     878/879
(99 %)
8 diff
(99.1 %id)
BG170287 hypernephroma, cell line, Kidney .a 351 to 979 30 to 663 L9M A14C R15Q D17G L18P ...     634/1025
(61 %)
17 diff
(98.4 %id)
BM311943 Pancreas, Purified pancreatic islet .a 353 to 871 1 to 520       520/520
(100 %)
1 diff
(99.9 %id)
CK821732 Pancreas, Purified pancreatic islet .a 370 to 941 1 to 572 exact   Submitted on the opposite strand 572/572
(100 %)
0 diff
(100 %id)
BM712661 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 376 to 733 1 to 358   fully sequenced,   358/358
(100 %)
0 diff
(100 %id)
TI_159681596   .a 414 to 1297 917 to 41 A2P E3T P4L W5G G6N ... AAA   877/965
(90 %)
34 diff
(96.5 %id)
AL578787 placenta .a 415 to 1269 857 to 1 P4X N7T E8I L9G A10X ...     857/1015
(84 %)
21 diff
(98.0 %id)
BU509306 leiomyosarcoma, uterus .a 448 to 1297 1 to 852   tiling clone,   852/853
(99 %)
9 diff
(99.0 %id)
BM713150 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 450 to 1085 1 to 636       636/636
(100 %)
0 diff
(100 %id)
TI_149300533   .a 473 to 1295 899 to 86   AAA   814/943
(86 %)
37 diff
(96.1 %id)
BQ345709 nervous_tumor .a 484 to 1011 529 to 1       529/529
(100 %)
7 diff
(98.7 %id)
BM762005 myeloma .a 512 to 1173 1 to 662       662/662
(100 %)
0 diff
(100 %id)
CB051930 leiomyosarcoma, soft tissue .a 524 to 773 11 to 259       249/259
(96 %)
9 diff
(96.6 %id)
BM681456 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 650 to 1294 656 to 14   fully sequenced, AAA   643/643
(100 %)
1 diff
(99.9 %id)
BU738383 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 703 to 1297 613 to 19   tiling clone, fully sequenced, AAA   595/595
(100 %)
0 diff
(100 %id)
N72115 melanocyte .a 807 to 1297 491 to 1       491/496
(98 %)
2 diff
(99.6 %id)
CB051929 leiomyosarcoma, soft tissue .a 1160 to 1297 155 to 18   AAA   138/138
(100 %)
3 diff
(97.9 %id)
BE783916 eye, retinoblastoma .b 1 to 517 1 to 517 D5T R6G R7D S8L R9G ... tiling clone,   517/517
(100 %)
2 diff
(99.7 %id)
BQ673259 epidermoid carcinoma, cell line, salivary gland .b 70 to 744 1 to 680       680/970
(70 %)
23 diff
(97.7 %id)
AL556553 placenta .b 71 to 860 1 to 798       798/932
(85 %)
39 diff
(95.9 %id)
CB119010 Liver .b 224 to 547 1 to 324       324/324
(100 %)
1 diff
(99.7 %id)
BQ879473 epidermoid carcinoma, cell line, salivary gland .b 228 to 868 1 to 644   tiling clone,   644/974
(66 %)
10 diff
(99.0 %id)
BE886484 leiomyosarcoma, uterus .b 252 to 517 1 to 266       266/266
(100 %)
0 diff
(100 %id)
BE885312 leiomyosarcoma, uterus .b 331 to 517 1 to 187       187/187
(100 %)
0 diff
(100 %id)
BE885012.
matches multiple genes
leiomyosarcoma, uterus, Uterus, leiomyosarcoma .b 396 to 517 1 to 122   available from MGC, also hits gene PSMB7 122/122
(100 %)
0 diff
(100 %id)
BM852457 stomach .b 507 to 854 1 to 348   tiling clone,   348/348
(100 %)
0 diff
(100 %id)
AK091170 tongue, tumor tissue .c 1 to 2903 2 to 2907 exact tiling clone, available from FLJ,   2907/2907
(100 %)
5 diff
(99.9 %id)
DA438027 tongue, tumor tissue .c 1 to 546 2 to 550   capped   549/550
(99 %)
4 diff
(99.3 %id)
BE780874 eye, retinoblastoma .c 269 to 995 1 to 725       725/735
(98 %)
19 diff
(97.5 %id)
DA603880   .c 779 to 1271 2 to 494   capped   493/493
(100 %)
1 diff
(99.8 %id)
BP366196 lung .c 779 to 1362 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
DA748917   .c 781 to 1354 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
AL528204 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .c 789 to 1787 1 to 993   fully sequenced,   993/993
(100 %)
24 diff
(97.6 %id)
AU098873   .c 793 to 1092 1 to 300       300/300
(100 %)
4 diff
(98.7 %id)
BP238632 Liver .c 793 to 1399 1 to 607       607/607
(100 %)
4 diff
(99.4 %id)
DB014837 esophageal, tumor tissue .c 795 to 1319 2 to 526   capped   525/525
(100 %)
5 diff
(99.1 %id)
DA060012 cerebellum .c 812 to 1335 2 to 526   capped   525/525
(100 %)
3 diff
(99.5 %id)
DA603985   .c 815 to 1316 2 to 503   capped   502/502
(100 %)
2 diff
(99.7 %id)
DA605319   .c 815 to 1346 2 to 534   capped   533/533
(100 %)
2 diff
(99.7 %id)
DA897269 skeletal muscle .c 817 to 1318 2 to 503   capped   502/502
(100 %)
1 diff
(99.9 %id)
DA911086   .c 817 to 1354 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
AF041248 breast .c 818 to 2903 1 to 2085 exact AAA   2085/2085
(100 %)
6 diff
(99.8 %id)
NM_001262.2   .c 818 to 2903 1 to 2086 exact RefSeq, AAA   2086/2086
(100 %)
0 diff
(100 %id)
BG419728 Kidney, renal cell adenocarcinoma .c 822 to 1620 1 to 784       784/952
(82 %)
23 diff
(97.6 %id)
DA618335   .c 826 to 1354 2 to 530   capped   529/529
(100 %)
2 diff
(99.7 %id)
BM738188 Ascites, stomach .c 829 to 1343 1 to 512       512/512
(100 %)
3 diff
(99.5 %id)
BM759636 Ascites, stomach .c 829 to 1451 1 to 623       623/623
(100 %)
0 diff
(100 %id)
DB122426 thymus .c 830 to 1404 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB128882 thymus .c 830 to 1380 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB246281 uterus, tumor tissue .c 830 to 1350 2 to 525   capped   524/528
(99 %)
5 diff
(99.1 %id)
DA485181 brain .c 831 to 1366 2 to 537   capped   536/536
(100 %)
3 diff
(99.5 %id)
DA824900 pericardium .c 831 to 1335 2 to 507   capped   506/506
(100 %)
6 diff
(98.9 %id)
DB107407 thymus .c 831 to 1335 2 to 506   capped   505/505
(100 %)
4 diff
(99.3 %id)
DA049561   .c 832 to 1246 2 to 415   capped   414/414
(100 %)
4 diff
(99.1 %id)
BC000598 Kidney, renal cell adenocarcinoma .c 836 to 2903 10 to 2077 exact tiling clone, available from MGC, AAA   2068/2068
(100 %)
0 diff
(100 %id)
DA482559   .c 836 to 1418 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
BF311040 brain, neuroblastoma .c 845 to 1623 1 to 772       772/979
(78 %)
19 diff
(98.1 %id)
BF315198 brain, neuroblastoma .c 845 to 1387 1 to 551       551/1081
(50 %)
19 diff
(98.3 %id)
BF313695 brain, neuroblastoma .c 845 to 1469 1 to 625       625/625
(100 %)
3 diff
(99.6 %id)
CB215123 normal endometrium, late proliferativephase, cycle day 13, uterus .c 845 to 1427 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BC005041 Brain, neuroblastoma .c 846 to 2895 1 to 2050 exact available from MGC, AAA   2050/2050
(100 %)
0 diff
(100 %id)
BI195651 brain, neuroblastoma .c 846 to 1297 1 to 452       452/452
(100 %)
2 diff
(99.6 %id)
BM804609 lymph, lymphoma, cell line .c 846 to 1408 31 to 595       565/1309
(43 %)
25 diff
(98.1 %id)
DA449560 tongue, tumor tissue .c 849 to 1383 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
DA479579   .c 849 to 1400 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
BM450858 eye, retinoblastoma .c 850 to 1492 1 to 643       643/945
(68 %)
11 diff
(98.9 %id)
DA907249   .c 850 to 1302 2 to 454   capped   453/453
(100 %)
1 diff
(99.8 %id)
CF131368 Chondrosarcoma Lung Metastasis cell lines, lung .c 852 to 1570 1 to 719       719/719
(100 %)
4 diff
(99.5 %id)
TI_159676460   .c 854 to 1622 58 to 826       769/1131
(67 %)
12 diff
(99.0 %id)
BX393439 Neuroblastoma Cot 10-normalized .c 855 to 1819 1 to 965       965/965
(100 %)
5 diff
(99.5 %id)
BE273866 Kidney, renal cell adenocarcinoma .c 856 to 1535 1 to 677       677/678
(99 %)
12 diff
(98.3 %id)
BE796788 lung, small cell carcinoma .c 860 to 1799 1 to 942       942/1049
(89 %)
48 diff
(95.5 %id)
CB594941 Blood, promyelocytic leukemia .c 861 to 1636 1 to 785       785/915
(85 %)
21 diff
(97.8 %id)
BF984871 duodenal adenocarcinoma, cell line, small intestine .c 862 to 1500 1 to 639       639/1028
(62 %)
12 diff
(98.9 %id)
DA158661 amygdala .c 863 to 1433 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BE263123 brain, neuroblastoma .c 865 to 1664 1 to 782       782/968
(80 %)
61 diff
(93.7 %id)
BM787933 stomach .c 873 to 1215 1 to 343       343/343
(100 %)
2 diff
(99.5 %id)
DA281691 corpus callosum .c 878 to 1264 2 to 388   capped   387/387
(100 %)
2 diff
(99.5 %id)
DA610896   .c 895 to 1450 2 to 557   capped   556/556
(100 %)
4 diff
(99.3 %id)
DB006539 cervix, tumor tissue .c 895 to 1445 2 to 553   capped   552/552
(100 %)
6 diff
(99.0 %id)
DA546730   .c 898 to 1294 2 to 398   capped   397/397
(100 %)
2 diff
(99.5 %id)
DA644825   .c 898 to 1473 2 to 578   capped   577/577
(100 %)
4 diff
(99.4 %id)
DA923042 small intestine .c 898 to 1371 2 to 475   capped   474/474
(100 %)
2 diff
(99.6 %id)
DA481649   .c 899 to 1463 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA536034 heart .c 899 to 1463 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA598500   .c 899 to 1318 2 to 421   capped   420/420
(100 %)
1 diff
(99.8 %id)
DB105552 thymus .c 899 to 1452 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DB106297 thymus .c 899 to 1473 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DB115680 thymus .c 899 to 1362 2 to 466   capped   465/465
(100 %)
3 diff
(99.4 %id)
DB245211 uterus, tumor tissue .c 899 to 1457 2 to 560   capped   559/560
(99 %)
1 diff
(99.9 %id)
DA001868   .c 900 to 1184 9 to 294   capped   286/296
(96 %)
3 diff
(99.0 %id)
DA143185 alzheimer cortex .c 900 to 1339 2 to 443   capped   442/442
(100 %)
2 diff
(99.6 %id)
DA383180 thalamus .c 900 to 1411 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
DA428056 colon .c 900 to 1354 2 to 457   capped   456/456
(100 %)
4 diff
(99.2 %id)
DA455208 tongue, tumor tissue .c 900 to 1497 2 to 598   capped   597/597
(100 %)
1 diff
(99.9 %id)
DA558732   .c 900 to 1443 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
AU119268 whole embryo, mainly head .c 900 to 1436 2 to 538   capped   537/825
(65 %)
2 diff
(99.8 %id)
DA602868   .c 900 to 1220 2 to 324   capped   323/323
(100 %)
2 diff
(99.4 %id)
DA609647   .c 900 to 1463 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA613599   .c 900 to 1271 115 to 487   capped   373/486
(76 %)
6 diff
(98.8 %id)
BM828942 stomach .c 900 to 1528 1 to 629       629/629
(100 %)
1 diff
(99.9 %id)
DA901909   .c 900 to 1286 2 to 388   capped   387/387
(100 %)
0 diff
(100 %id)
DA906126   .c 900 to 1196 2 to 299   capped   298/298
(100 %)
2 diff
(99.4 %id)
DA918484 small intestine .c 900 to 1452 2 to 554   capped   553/553
(100 %)
3 diff
(99.5 %id)
DB105476 thymus .c 900 to 1444 20 to 564   capped   545/563
(96 %)
6 diff
(99.0 %id)
DA002643   .c 901 to 1402 2 to 503   capped   502/502
(100 %)
1 diff
(99.9 %id)
DA002968   .c 901 to 1452 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DA023386   .c 901 to 1460 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA038661   .c 901 to 1473 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
BP205450 coronary artery .c 901 to 1480 1 to 581       581/581
(100 %)
9 diff
(98.5 %id)
DA482740   .c 901 to 1471 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA597783   .c 901 to 1384 2 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
DA616017   .c 901 to 1354 2 to 456   capped   455/455
(100 %)
1 diff
(99.8 %id)
DA903040   .c 901 to 1192 2 to 293   capped   292/292
(100 %)
0 diff
(100 %id)
DA915565   .c 901 to 1458 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA951766 Spleen .c 901 to 1273 2 to 374   capped   373/373
(100 %)
1 diff
(99.8 %id)
DA996361   .c 901 to 1436 2 to 540   capped   539/539
(100 %)
4 diff
(99.3 %id)
DB102122 thymus .c 901 to 1459 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB112828 thymus .c 901 to 1376 2 to 477   capped   476/476
(100 %)
0 diff
(100 %id)
DB120288 thymus .c 901 to 1437 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DB251901 uterus .c 901 to 1484 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DB274998 uterus .c 901 to 1436 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA053591   .c 902 to 1298 2 to 399   capped   398/398
(100 %)
1 diff
(99.8 %id)
BP205438 coronary artery .c 902 to 1422 1 to 515       515/581
(88 %)
47 diff
(92.0 %id)
DA663913   .c 903 to 1466 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB113991 thymus .c 903 to 1483 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA048946   .c 904 to 1228 2 to 326   capped   325/325
(100 %)
0 diff
(100 %id)
DA543807   .c 906 to 1406 2 to 503   capped   502/502
(100 %)
2 diff
(99.7 %id)
DA616296   .c 906 to 1483 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA004990   .c 911 to 1139 2 to 230   capped   229/229
(100 %)
0 diff
(100 %id)
AL526837 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .c 912 to 1858 1 to 946   fully sequenced,   946/946
(100 %)
21 diff
(97.8 %id)
BX353609 Neuroblastoma Cot 25-normalized .c 913 to 1897 1 to 979       979/1052
(93 %)
15 diff
(98.6 %id)
BX383458   .c 913 to 1866 1 to 942       942/946
(99 %)
17 diff
(98.3 %id)
BM904831 melanotic melanoma, skin .c 913 to 1647 1 to 745       745/1046
(71 %)
16 diff
(98.5 %id)
BQ924836 large cell carcinoma, lung .c 914 to 1417 1 to 510       510/878
(58 %)
7 diff
(99.3 %id)
BC017036 Lung, large cell carcinoma .c 916 to 2895 1 to 1980 exact available from MGC, AAA   1980/1980
(100 %)
0 diff
(100 %id)
BG163915 hypernephroma, cell line, Kidney .c 916 to 1653 1 to 749       749/1022
(73 %)
66 diff
(93.6 %id)
AL552816 placenta, Placenta Cot 25-normalized .c 920 to 1901 1 to 978   fully sequenced,   978/978
(100 %)
12 diff
(98.8 %id)
BG178959 adenocarcinoma, cell line, Prostate .c 920 to 1720 1 to 793       793/916
(86 %)
34 diff
(96.3 %id)
DB129615 thymus .c 920 to 1460 2 to 543   capped   542/542
(100 %)
4 diff
(99.3 %id)
DA907218   .c 922 to 1483 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BF034664 adenocarcinoma, ovary .c 927 to 1657 1 to 729       729/805
(90 %)
9 diff
(98.9 %id)
BM147316 leukopheresis .c 927 to 1447 1 to 520       520/520
(100 %)
1 diff
(99.9 %id)
BM149235 leukopheresis .c 927 to 1187 1 to 262       262/262
(100 %)
6 diff
(97.8 %id)
BM149943 leukopheresis .c 927 to 1316 1 to 390       390/393
(99 %)
22 diff
(94.5 %id)
DB130080 thymus .c 927 to 1500 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BM552303 leiomyosarcoma, uterus .c 929 to 1818 1 to 893       893/1015
(87 %)
12 diff
(98.9 %id)
DB024772 testis .c 929 to 1473 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
DA005900   .c 930 to 1466 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
BM785716 Ascites, stomach .c 930 to 1484 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
DA902563   .c 930 to 1406 2 to 478   capped   477/477
(100 %)
0 diff
(100 %id)
DA909962   .c 930 to 1504 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DB115785 thymus .c 930 to 1499 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA001519   .c 931 to 1173 2 to 244   capped   243/243
(100 %)
0 diff
(100 %id)
DA049747   .c 931 to 1313 2 to 384   capped   383/383
(100 %)
0 diff
(100 %id)
BP207020 coronary artery .c 931 to 1512 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
AU279804   .c 931 to 1498 1 to 568       568/568
(100 %)
0 diff
(100 %id)
DA606685   .c 931 to 1549 2 to 620   capped   619/619
(100 %)
0 diff
(100 %id)
DA902164   .c 931 to 1497 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA913469   .c 931 to 1482 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DA977611 synovial membrane tissue from rheumatioidarthritis .c 931 to 1503 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB114950 thymus .c 931 to 1491 2 to 564   capped   563/564
(99 %)
6 diff
(99.0 %id)
DB120211 thymus .c 931 to 1492 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB121513 thymus .c 931 to 1493 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB125180 thymus .c 931 to 1506 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DB203949 trachea .c 931 to 1394 2 to 465   capped   464/464
(100 %)
1 diff
(99.8 %id)
DA285248 corpus callosum .c 932 to 1481 2 to 556   capped   555/555
(100 %)
7 diff
(98.8 %id)
DA912201   .c 932 to 1455 2 to 526   capped   525/525
(100 %)
1 diff
(99.9 %id)
DB140285 thymus .c 932 to 1427 2 to 498   capped   497/497
(100 %)
3 diff
(99.4 %id)
BE781749 eye, retinoblastoma .c 933 to 1450 1 to 519       519/519
(100 %)
3 diff
(99.5 %id)
DA607311   .c 933 to 1500 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BF791365 adrenal cortex carcinoma, cell line, adrenal gland .c 934 to 1676 1 to 742       742/959
(77 %)
8 diff
(99.2 %id)
BG164875 hypernephroma, cell line, Kidney .c 934 to 1469 16 to 546       531/546
(97 %)
6 diff
(99.0 %id)
BI907711 leukocyte .c 935 to 1736 1 to 805       805/807
(99 %)
16 diff
(98.1 %id)
TI_57234268   .c 935 to 1736 29 to 833       805/835
(96 %)
16 diff
(98.1 %id)
DA601571   .c 936 to 1499 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BQ064851 lymph, lymphoma, cell line .c 941 to 1835 1 to 907       907/1012
(89 %)
29 diff
(97.2 %id)
BM804424 lymph, lymphoma, cell line .c 945 to 1687 1 to 753       753/1188
(63 %)
17 diff
(98.6 %id)
BM920084 pooled pancreas and spleen .c 945 to 1764 1 to 823       823/1061
(77 %)
24 diff
(97.8 %id)
BF204610 muscle, rhabdomyosarcoma .c 949 to 1619 1 to 666       666/884
(75 %)
11 diff
(98.8 %id)
DA002743   .c 951 to 1232 2 to 286   capped   285/285
(100 %)
3 diff
(99.0 %id)
DA013762 adrenal gland .c 960 to 1486 2 to 529   capped   528/528
(100 %)
2 diff
(99.7 %id)
DA602179   .c 960 to 1527 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB108439 thymus .c 960 to 1535 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BG104706 adrenal cortex carcinoma, cell line, adrenal gland .c 962 to 1752 1 to 779       779/806
(96 %)
31 diff
(96.2 %id)
BQ055851 lymph, lymphoma, cell line .c 962 to 1708 25 to 778       754/1133
(66 %)
19 diff
(98.4 %id)
DA270508 caudate nucleus .c 963 to 1377 2 to 417   capped   416/416
(100 %)
1 diff
(99.8 %id)
DA276206 corpus callosum .c 963 to 1518 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
BM928342 hepatocellular carcinoma, cell line, Liver .c 963 to 1874 1 to 921       921/1075
(85 %)
33 diff
(97.0 %id)
DB107010 thymus .c 964 to 1264 2 to 304   capped   303/303
(100 %)
4 diff
(98.7 %id)
BG528126 lung, mucoepidermoid carcinoma .c 965 to 1527 1 to 566       566/566
(100 %)
11 diff
(98.1 %id)
BX341062   .c 970 to 1792 1 to 821       821/821
(100 %)
2 diff
(99.8 %id)
DA907187   .c 970 to 1416 2 to 451   capped   450/450
(100 %)
3 diff
(99.4 %id)
BG938812 Bone, Hip .c 983 to 1369 8 to 394       387/394
(98 %)
6 diff
(98.5 %id)
BM472624 embryonal carcinoma, cell line, testis .c 1043 to 1537 37 to 533       497/1218
(40 %)
18 diff
(98.6 %id)
DA134258 alzheimer cortex .c 1091 to 1643 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA538063 Kidney .c 1096 to 1628 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
BM474994 duodenal adenocarcinoma, cell line, small intestine .c 1102 to 1867 1 to 770       770/1010
(76 %)
8 diff
(99.3 %id)
DA070217 cerebellum .c 1107 to 1593 2 to 490   capped   489/489
(100 %)
4 diff
(99.2 %id)
BX442998 B cells (Ramos cell line) .c 1123 to 2031 1 to 921       921/972
(94 %)
22 diff
(97.8 %id)
DA617639   .c 1139 to 1598 2 to 461   capped   460/460
(100 %)
0 diff
(100 %id)
BE206507 cervical carcinoma cell line, cervix .c 1149 to 1338 1 to 190       190/190
(100 %)
0 diff
(100 %id)
BE795943 lung, small cell carcinoma .c 1153 to 2019 1 to 857       857/1114
(76 %)
29 diff
(97.4 %id)
DB032520 testis .c 1193 to 1689 2 to 499   capped   498/498
(100 %)
2 diff
(99.6 %id)
CR612337 HeLa cells Cot 25-normalized .c 1234 to 2875 1 to 1642 exact     1642/1642
(100 %)
0 diff
(100 %id)
BC016173 Uterus, leiomyosarcoma .c 1473 to 2903 1 to 1431 T126M available from MGC, AAA   1431/1431
(100 %)
1 diff
(100.0 %id)
BG828311 muscle, rhabdomyosarcoma .c 1487 to 2378 1 to 897       897/1050
(85 %)
45 diff
(95.8 %id)
BX372086   .c 1488 to 2301 803 to 1       803/916
(87 %)
24 diff
(97.4 %id)
DR006827 Spleen .c 1533 to 2100 22 to 589       568/589
(96 %)
6 diff
(99.0 %id)
BU173149 eye, retinoblastoma .c 1545 to 2413 1 to 877       877/878
(99 %)
17 diff
(98.1 %id)
BM549119 astrocytoma grade IV, cell line, brain .c 1566 to 2310 1 to 751       751/1192
(63 %)
23 diff
(98.1 %id)
BX353053 Neuroblastoma Cot 10-normalized .c 1587 to 2435 1 to 849       849/849
(100 %)
2 diff
(99.8 %id)
AL563080 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .c 1771 to 2850 1074 to 1 N35K G36W F37I G38W R39K ... fully sequenced,   1074/1074
(100 %)
30 diff
(97.3 %id)
BU602015 mixed (pool of 40 RNAs) .c 1788 to 2630 1 to 852 H132A R133S N134E H135P K136*     852/855
(99 %)
20 diff
(97.7 %id)
BX390687   .c 1793 to 2747 1 to 962 G131X G137X N150W E151G V153C ...     962/977
(98 %)
50 diff
(94.9 %id)
AL562754 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .c 1847 to 2868 1020 to 1 A41R L42C Q43R V44L M45* fully sequenced,   1020/1020
(100 %)
10 diff
(99.1 %id)
AL552782 placenta, Placenta Cot 25-normalized .c 1897 to 2868 966 to 5 A2P E3S P4X W5G G6E ... fully sequenced,   962/966
(99 %)
18 diff
(98.2 %id)
AA452363   .c 1921 to 2440 1 to 519   fully sequenced,   519/519
(100 %)
1 diff
(99.9 %id)
CA487204   .c 1921 to 2784 1 to 871 exact     871/872
(99 %)
9 diff
(99.0 %id)
BF792127 adrenal cortex carcinoma, cell line, adrenal gland .c 1951 to 2798 1 to 834 exact     834/973
(85 %)
26 diff
(97.4 %id)
BG164841 hypernephroma, cell line, Kidney .c 1967 to 2747 1 to 782 D17T L18*     782/783
(99 %)
20 diff
(97.5 %id)
AI834328 stomach .c 1979 to 2371 1 to 393       393/393
(100 %)
1 diff
(99.8 %id)
BX341061   .c 1992 to 2864 877 to 7 E8X D17T L18*     871/877
(99 %)
2 diff
(99.8 %id)
BG110242 Bone, osteosarcoma, cell line .c 2017 to 2676 1 to 661 exact     661/912
(72 %)
10 diff
(99.0 %id)
BX383457   .c 2022 to 2874 841 to 1 E3S P4L W5V G6*     841/841
(100 %)
30 diff
(96.5 %id)
BX435778 B cells (Ramos cell line) .c 2025 to 2900 879 to 1 A2P E3K E8K A10G A12P ...     879/884
(99 %)
37 diff
(95.9 %id)
CR450289   .c 2034 to 2537 1 to 504       504/504
(100 %)
0 diff
(100 %id)
EL736705 mixed .c 2034 to 2539 1 to 506       506/603
(83 %)
1 diff
(99.9 %id)
TI_1948233101   .c 2034 to 2539 132 to 637   fully sequenced,   506/535
(94 %)
7 diff
(98.7 %id)
TI_1948233255   .c 2034 to 2539 142 to 647   fully sequenced, AAA   506/535
(94 %)
7 diff
(98.7 %id)
TI_1948233403   .c 2034 to 2539 137 to 642       506/649
(77 %)
8 diff
(98.8 %id)
TI_1948233560   .c 2034 to 2539 142 to 647       506/1365
(37 %)
18 diff
(98.7 %id)
AA285308   .c 2051 to 2232 1 to 185       185/185
(100 %)
7 diff
(96.3 %id)
AW862806 stomach_normal .c 2063 to 2413 349 to 1       349/356
(98 %)
14 diff
(96.1 %id)
AW899459 nervous_normal .c 2063 to 2413 349 to 1       349/356
(98 %)
14 diff
(96.1 %id)
AI795856 stomach .c 2091 to 2422 332 to 1       332/332
(100 %)
8 diff
(97.6 %id)
AI795872 stomach .c 2103 to 2422 320 to 1       320/320
(100 %)
3 diff
(99.1 %id)
BG939755 bone marrow stroma .c 2108 to 2570 499 to 37   AAA   463/463
(100 %)
1 diff
(99.8 %id)
BG960087 colon .c 2160 to 2430 272 to 2       271/280
(96 %)
0 diff
(100 %id)
AI870679 anaplastic oligodendroglioma, brain .c 2160 to 2902 744 to 1       744/744
(100 %)
21 diff
(97.2 %id)
TI_1948233102   .c 2160 to 2539 515 to 136   fully sequenced,   380/515
(73 %)
0 diff
(100 %id)
TI_1948233256   .c 2160 to 2539 511 to 132   fully sequenced,   380/511
(74 %)
0 diff
(100 %id)
AI357641 brain, glioblastoma (pooled) .c 2161 to 2903 756 to 14   AAA   743/867
(85 %)
15 diff
(98.3 %id)
AA022638 heart .c 2162 to 2577 1 to 416   fully sequenced,   416/416
(100 %)
1 diff
(99.8 %id)
TI_154056712   .c 2165 to 2903 834 to 101   AAA   734/943
(77 %)
9 diff
(99.1 %id)
BU634265 cell lines, Chondrosarcoma .c 2176 to 2903 744 to 19   AAA   726/726
(100 %)
5 diff
(99.4 %id)
CK725115 Chondrosarcoma, Left Pubic Bone .c 2202 to 2903 721 to 19   AAA   703/703
(100 %)
4 diff
(99.5 %id)
TI_154105200   .c 2206 to 2903 787 to 88   AAA   700/700
(100 %)
4 diff
(99.5 %id)
AA424974 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2215 to 2593 1 to 378   fully sequenced,   378/378
(100 %)
1 diff
(99.8 %id)
BQ014999 Chondrosarcoma, Left Pubic Bone .c 2215 to 2903 708 to 19   AAA   690/690
(100 %)
4 diff
(99.5 %id)
AA482517 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2220 to 2604 1 to 383   fully sequenced,   383/383
(100 %)
2 diff
(99.5 %id)
CA446476 Chondrosarcoma, Left Pubic Bone .c 2227 to 2903 697 to 19   AAA   679/679
(100 %)
4 diff
(99.5 %id)
BE893497 melanotic melanoma, skin .c 2241 to 2900 1 to 660       660/660
(100 %)
22 diff
(96.7 %id)
AI884716 anaplastic oligodendroglioma, brain .c 2244 to 2904 663 to 3       661/663
(99 %)
0 diff
(100 %id)
BM976583 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 2256 to 2903 666 to 19   AAA   648/648
(100 %)
11 diff
(98.4 %id)
AI076201 liver and spleen .c 2268 to 2903 637 to 1       637/640
(99 %)
16 diff
(97.5 %id)
BM311354 Pancreas, Purified pancreatic islet .c 2271 to 2902 631 to 1       631/631
(100 %)
1 diff
(99.9 %id)
BP429917   .c 2297 to 2695 1 to 400       400/400
(100 %)
4 diff
(99.0 %id)
CK821733 Pancreas, Purified pancreatic islet .c 2315 to 2907 598 to 6     Submitted on the opposite strand 593/598
(99 %)
0 diff
(100 %id)
BQ345606 nervous_tumor .c 2322 to 2625 1 to 301       301/301
(100 %)
10 diff
(96.7 %id)
AI560994 anaplastic oligodendroglioma, brain .c 2325 to 2907 583 to 1       583/583
(100 %)
6 diff
(99.0 %id)
BQ674059 epidermoid carcinoma, cell line, salivary gland .c 2329 to 2904 1 to 578   AAA   578/578
(100 %)
4 diff
(99.4 %id)
BQ670511 epidermoid carcinoma, cell line, salivary gland .c 2329 to 2905 1 to 576       576/596
(96 %)
6 diff
(99.0 %id)
BG122529 adenocarcinoma, cell line, Liver .c 2335 to 2909 1 to 573       573/850
(67 %)
6 diff
(99.3 %id)
AW005436 anaplastic oligodendroglioma, brain .c 2355 to 2903 549 to 1       549/549
(100 %)
0 diff
(100 %id)
BP431022   .c 2359 to 2754 1 to 397       397/397
(100 %)
1 diff
(99.8 %id)
BE301412 cervical carcinoma cell line, cervix .c 2363 to 2904 545 to 1       545/545
(100 %)
3 diff
(99.5 %id)
DB313493 tongue, tumor tissue .c 2369 to 2903 535 to 1       535/535
(100 %)
4 diff
(99.3 %id)
BE855470 brain, glioblastoma (pooled) .c 2373 to 2903 531 to 1       531/531
(100 %)
0 diff
(100 %id)
AI689193 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 2385 to 2903 519 to 1       519/519
(100 %)
22 diff
(95.8 %id)
AI499869 anaplastic oligodendroglioma, brain .c 2386 to 2903 546 to 28   AAA   519/520
(99 %)
8 diff
(98.5 %id)
BF991403 placenta_normal .c 2389 to 2684 297 to 3       295/305
(96 %)
6 diff
(98.1 %id)
BG060110 brain, glioblastoma without EGFR amplification .c 2394 to 2903 521 to 11   AAA   511/511
(100 %)
4 diff
(99.3 %id)
BQ010433 Chondrosarcoma, Left Pubic Bone .c 2400 to 2903 522 to 19   AAA   504/504
(100 %)
11 diff
(97.9 %id)
AA452137   .c 2410 to 2535 126 to 1   fully sequenced,   126/126
(100 %)
2 diff
(98.5 %id)
AI342279 uterus .c 2412 to 2903 492 to 1       492/492
(100 %)
2 diff
(99.6 %id)
AA708801 uterus .c 2424 to 2907 483 to 1       483/483
(100 %)
5 diff
(99.0 %id)
BI335329 cervical carcinoma cell line, cervix .c 2424 to 2907 1 to 495       495/510
(97 %)
11 diff
(97.9 %id)
AI362318 brain, glioblastoma (pooled) .c 2445 to 2902 458 to 1       458/458
(100 %)
2 diff
(99.6 %id)
BG938811 Bone, Hip .c 2450 to 2875 434 to 9       426/434
(98 %)
0 diff
(100 %id)
BF513575   .c 2451 to 2902 468 to 18   AAA   451/451
(100 %)
2 diff
(99.6 %id)
AU145656 whole embryo, mainly head .c 2466 to 2903 438 to 1       438/583
(75 %)
1 diff
(99.9 %id)
BX353052 Neuroblastoma Cot 10-normalized .c 2467 to 2842 402 to 27       376/411
(91 %)
0 diff
(100 %id)
BF697092 brain, primitive neuroectoderm .c 2467 to 3096 1 to 635   tiling clone,   635/740
(85 %)
58 diff
(92.2 %id)
N31978 placenta .c 2468 to 2903 454 to 13   AAA   442/511
(86 %)
12 diff
(97.7 %id)
BE783451 eye, retinoblastoma .c 2486 to 2905 1 to 420   AAA   420/420
(100 %)
0 diff
(100 %id)
BQ219335 epithelioid carcinoma, Pancreas .c 2513 to 2902 32 to 423   AAA   392/423
(92 %)
6 diff
(98.6 %id)
AA022649 heart .c 2547 to 2903 360 to 1   fully sequenced,   360/360
(100 %)
1 diff
(99.8 %id)
BM144475 leukopheresis .c 2550 to 2895 370 to 25   AAA   346/346
(100 %)
2 diff
(99.5 %id)
AA872129 pooled germ cell tumors .c 2555 to 2907 354 to 2       353/354
(99 %)
0 diff
(100 %id)
AA495966 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2563 to 2908 345 to 1   fully sequenced,   345/345
(100 %)
2 diff
(99.5 %id)
AW510372 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 2571 to 2903 333 to 1       333/333
(100 %)
0 diff
(100 %id)
AA417884 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2574 to 2908 337 to 1   fully sequenced,   337/337
(100 %)
2 diff
(99.5 %id)
AA617663 lung, lung tumor .c 2602 to 2903 328 to 27   AAA   302/302
(100 %)
0 diff
(100 %id)
FN086684 breast carcinoma .c 2619 to 2720 1 to 103       103/108
(95 %)
2 diff
(98.2 %id)
AI421036 Prostate .c 2637 to 2903 267 to 1       267/267
(100 %)
0 diff
(100 %id)
AI674592 Prostate .c 2637 to 2903 278 to 12   AAA   267/267
(100 %)
7 diff
(97.4 %id)
AI674593 Prostate .c 2637 to 2894 267 to 10       258/267
(96 %)
0 diff
(100 %id)
T03507   .c 2644 to 2903 261 to 1       261/261
(100 %)
10 diff
(96.2 %id)
BE382919 brain, neuroblastoma .c 2650 to 2892 414 to 679       616/682
(90 %)
70 diff
(89.8 %id)
FN069186 breast carcinoma .c 2684 to 2780 94 to 1     Submitted on the opposite strand 94/96
(97 %)
3 diff
(96.9 %id)
AA721632 germinal center B cell .c 2692 to 2903 222 to 11   AAA   212/213
(99 %)
4 diff
(98.2 %id)
CB987151 Pooled-Glandular .c 2738 to 2895 1 to 158   AAA   158/158
(100 %)
3 diff
(98.2 %id)
AI242917 liver and spleen .c 2773 to 2903 149 to 19   AAA   131/132
(99 %)
4 diff
(97.0 %id)
AK021794 whole embryo, mainly head Gene CDKN2C, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
DB312959   Gene CDKN2C, variant not shown              
DA424709   Gene CDKN2C, variant not shown       capped      
H69744 liver and spleen Gene CDKN2C, variant not shown              
H70415 liver and spleen Gene CDKN2C, variant not shown              
BG176970 lymph, lymphoma, cell line Gene CDKN2C, variant not shown         Suspected internal deletion, this clone was ignored    
BQ049231 lymph, lymphoma, cell line Gene CDKN2C, variant not shown         Submitted on the opposite strand    
TI_154103453   Gene CDKN2C, variant not shown       AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI