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Gene CDK7TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
278 supporting clones for gene CDK7 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BU521734 leiomyosarcoma, uterus .a 1 to 867 1 to 879   tiling clone,   879/900
(97 %)
20 diff
(97.8 %id)
TI_43963552.
matches multiple genes
  .a 775 to 1666 30 to 934   tiling clone, also hits gene CDK7PS 904/937
(96 %)
26 diff
(97.3 %id)
BI520184.
matches multiple genes
brain, medulla .a 782 to 1666 1 to 899     also hits gene CDK7PS 898/902
(99 %)
26 diff
(97.2 %id)
NM_001799.3   .a 782 to 2297 1 to 1516 exact RefSeq, AAA   1516/1516
(100 %)
0 diff
(100 %id)
CX751250 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 820 to 1553 18 to 747     Submitted on the opposite strand 730/748
(97 %)
12 diff
(98.4 %id)
BI463484 testis .a 826 to 1666 1 to 846       846/846
(100 %)
23 diff
(97.3 %id)
BI463437 testis .a 826 to 1533 1 to 716       716/716
(100 %)
13 diff
(98.2 %id)
BM854179 stomach .a 845 to 1255 1 to 411       411/411
(100 %)
2 diff
(99.6 %id)
BM012090 brain, neuroblastoma, cell line .a 854 to 1692 1 to 833       833/834
(99 %)
22 diff
(97.4 %id)
TI_59381287   .a 855 to 1692 72 to 903       832/833
(99 %)
21 diff
(97.5 %id)
Y13120 lung and thymus .a 860 to 2133 1 to 1274 F249C S321A     1274/1274
(100 %)
3 diff
(99.8 %id)
BU192122 large cell carcinoma, lung .a 861 to 1756 1 to 900       900/901
(99 %)
12 diff
(98.7 %id)
CD357348 Blood vessels - aorta, basilar and artery .a 861 to 1371 1 to 514       514/851
(60 %)
16 diff
(98.2 %id)
BG940928 blood .a 863 to 1255 1 to 393       393/393
(100 %)
1 diff
(99.8 %id)
CD000373 Pooled-Skin .a 863 to 1574 1 to 720       720/724
(99 %)
15 diff
(98.0 %id)
CR611671 Neuroblastoma Cot 25-normalized .a 864 to 2166 1 to 1303 exact     1303/1303
(100 %)
0 diff
(100 %id)
BX353218 Neuroblastoma Cot 25-normalized .a 864 to 1620 1 to 755   fully sequenced,   755/755
(100 %)
4 diff
(99.5 %id)
BP872612 embryonal kidney .a 864 to 1445 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BF572102 melanotic melanoma, high MDR, skin .a 865 to 1371 1 to 511       505/638
(79 %)
26 diff
(96.0 %id)
CD709269 normal nasopharynx .a 866 to 1136 33 to 302       270/302
(89 %)
3 diff
(99.1 %id)
BI550531 brain, hippocampus .a 867 to 1467 1 to 601       601/601
(100 %)
6 diff
(99.1 %id)
AA436938   .a 868 to 1412 1 to 544       544/544
(100 %)
3 diff
(99.5 %id)
BG435084 placenta .a 869 to 1554 1 to 686       686/686
(100 %)
16 diff
(97.7 %id)
TI_44172100   .a 869 to 1467 124 to 722       599/722
(82 %)
1 diff
(99.9 %id)
AU098491   .a 870 to 1174 1 to 300       300/300
(100 %)
6 diff
(98.0 %id)
CD687795 normal nasopharynx .a 870 to 1384 32 to 545       514/545
(94 %)
4 diff
(99.3 %id)
BF028257 bladder, carcinoma, cell line .a 871 to 1371 1 to 504       504/773
(65 %)
5 diff
(99.4 %id)
BU933491 mixed (pool of 40 RNAs) .a 871 to 1590 1 to 724       724/739
(97 %)
9 diff
(98.8 %id)
BG431683 Kidney .a 873 to 1547 1 to 673       673/675
(99 %)
8 diff
(98.9 %id)
BU932572 mixed (pool of 40 RNAs) .a 873 to 1591 1 to 724       724/743
(97 %)
9 diff
(98.8 %id)
BM848090 myeloma .a 873 to 1474 1 to 602       602/602
(100 %)
1 diff
(99.9 %id)
X79193 placenta .a 873 to 2163 1 to 1291 exact AAA   1291/1291
(100 %)
5 diff
(99.7 %id)
BC005298 Bladder, carcinoma .a 875 to 2163 1 to 1289 Q130R available from MGC, AAA   1289/1289
(100 %)
1 diff
(100.0 %id)
BF699395 brain, primitive neuroectoderm .a 875 to 1576 1 to 721       689/795
(86 %)
27 diff
(96.7 %id)
AL037544 brain .a 876 to 1423 35 to 594       560/596
(93 %)
17 diff
(97.2 %id)
BP245372 Kidney .a 876 to 1458 1 to 580       580/582
(99 %)
12 diff
(98.0 %id)
BG613965 embryonal carcinoma, testis .a 876 to 1764 1 to 892       892/895
(99 %)
43 diff
(95.2 %id)
DN998266 breast cancer, Mammary gland (cancer tissue) .a 877 to 1577 1 to 703       703/703
(100 %)
8 diff
(98.9 %id)
BP872498 embryonal kidney .a 881 to 1462 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BG506878 lung .a 881 to 1491 1 to 603       603/605
(99 %)
17 diff
(97.2 %id)
BM564276 brain, medulla .a 883 to 1675 13 to 811       799/1123
(71 %)
15 diff
(98.7 %id)
TI_57244230   .a 883 to 1550 29 to 695       667/695
(95 %)
1 diff
(99.9 %id)
DR759802 embryonic stem .a 885 to 1666 1 to 780       780/780
(100 %)
3 diff
(99.7 %id)
BI915271 brain .a 887 to 1550 1 to 663       663/663
(100 %)
2 diff
(99.7 %id)
BQ217019 large cell carcinoma, lung .a 888 to 1498 1 to 612       612/830
(73 %)
8 diff
(99.1 %id)
BQ431198 embryonal carcinoma, cell line, testis .a 888 to 1804 1 to 916       916/917
(99 %)
5 diff
(99.5 %id)
BM797506 Ascites, stomach .a 888 to 1028 1 to 141       141/141
(100 %)
1 diff
(99.3 %id)
BE719090 head_neck .a 890 to 1217 342 to 15       328/344
(95 %)
0 diff
(100 %id)
AA259104 germinal center B cell .a 894 to 1355 1 to 462       462/463
(99 %)
5 diff
(99.0 %id)
BE565004 bladder, carcinoma, cell line .a 894 to 1480 1 to 588       588/830
(70 %)
30 diff
(96.4 %id)
DN993072 brain, whole brain .a 894 to 1572 8 to 686       679/686
(98 %)
1 diff
(99.9 %id)
AA081668   .a 896 to 1448 1 to 549       549/549
(100 %)
12 diff
(97.9 %id)
AK026509   .a 897 to 2163 1 to 1267 exact available from FLJ, AAA   1267/1267
(100 %)
2 diff
(99.9 %id)
BE887969 leiomyosarcoma, uterus .a 899 to 1591 1 to 694       694/863
(80 %)
19 diff
(97.8 %id)
BP211339 cerebellum .a 900 to 1489 1 to 592       592/592
(100 %)
16 diff
(97.3 %id)
DR159604 human embryonic stem cells differentiated toan early endodermal cell type .a 903 to 1704 1 to 802       802/802
(100 %)
1 diff
(99.9 %id)
BE782346 eye, retinoblastoma .a 904 to 1491 1 to 583       583/849
(68 %)
17 diff
(98.0 %id)
BE784361 large cell carcinoma, lung .a 904 to 1591 1 to 687       687/862
(79 %)
10 diff
(98.9 %id)
AV715121   .a 910 to 1403 13 to 506       494/578
(85 %)
13 diff
(97.8 %id)
BI818524 pooled brain, lung, testis .a 918 to 1719 1 to 800       800/801
(99 %)
8 diff
(99.1 %id)
TI_57196418   .a 918 to 1719 68 to 867       800/868
(92 %)
8 diff
(99.1 %id)
X77303 connective .a 920 to 2163 1 to 1244 exact AAA   1244/1244
(100 %)
1 diff
(100.0 %id)
BF967337 brain, hypothalamus .a 925 to 1597 1 to 671       671/906
(74 %)
13 diff
(98.6 %id)
BG772877 testis .a 925 to 1773 1 to 854       854/855
(99 %)
16 diff
(98.2 %id)
BI561020 testis .a 925 to 1802 1 to 880       882/880
(100 %)
21 diff
(97.7 %id)
BG623675 placenta .a 926 to 1726 1 to 800       800/802
(99 %)
14 diff
(98.3 %id)
BQ278433 mixed (pool of 40 RNAs) .a 927 to 1487 1 to 568       568/1026
(55 %)
13 diff
(98.8 %id)
CD522030 pooled .a 927 to 1591 1 to 667       667/794
(84 %)
10 diff
(98.8 %id)
BG535383 lung .a 929 to 1770 1 to 846       846/846
(100 %)
26 diff
(97.0 %id)
X77743   .a 929 to 2289 1 to 1361 exact tiling clone, AAA   1361/1361
(100 %)
4 diff
(99.8 %id)
AA187708   .a 930 to 1404 1 to 475       475/479
(99 %)
7 diff
(98.6 %id)
TI_44349255   .a 930 to 1802 153 to 1027       877/1027
(85 %)
17 diff
(98.4 %id)
BM762644 lymph node, stomach .a 930 to 1068 1 to 139       139/139
(100 %)
1 diff
(99.3 %id)
BX111344 liver and spleen .a 931 to 1270 23 to 362       340/362
(93 %)
1 diff
(99.8 %id)
DB489144 hypothalamus .a 931 to 1371 1 to 440       440/444
(99 %)
9 diff
(98.0 %id)
DB495576 hypothalamus .a 931 to 1433 1 to 503       503/503
(100 %)
1 diff
(99.9 %id)
DA896272 skeletal muscle .a 931 to 1477 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
BQ051418 large cell carcinoma, lung .a 935 to 1827 4 to 901       898/1037
(86 %)
27 diff
(97.4 %id)
BI255926 cervical carcinoma cell line, cervix .a 940 to 1800 1 to 864       864/865
(99 %)
12 diff
(98.7 %id)
BM904360 lymph, lymphoma, cell line .a 940 to 1827 12 to 906       895/1009
(88 %)
14 diff
(98.7 %id)
TI_57187497   .a 940 to 1777 119 to 949       831/834
(99 %)
15 diff
(98.3 %id)
BI857366 breast, mammary adenocarcinoma, cell line .a 942 to 1777 1 to 829       829/832
(99 %)
15 diff
(98.2 %id)
BQ432504 leiomyosarcoma, uterus .a 942 to 1750 1 to 809       809/810
(99 %)
2 diff
(99.8 %id)
BC000834 Cervix, carcinoma .a 943 to 2163 1 to 1221 exact available from MGC, AAA   1221/1221
(100 %)
0 diff
(100 %id)
F06677 brain, total brain .a 943 to 1220 1 to 279       279/291
(95 %)
6 diff
(98.0 %id)
F06211 brain, total brain .a 943 to 1250 1 to 308       308/308
(100 %)
3 diff
(99.1 %id)
BI094030 cervix .a 943 to 1730 1 to 791       791/791
(100 %)
20 diff
(97.5 %id)
BI223035 cervical carcinoma cell line, cervix .a 943 to 1695 1 to 751       751/751
(100 %)
5 diff
(99.4 %id)
BI831439 brain, medulla .a 943 to 1839 1 to 896       896/896
(100 %)
8 diff
(99.2 %id)
TI_57172272   .a 943 to 1839 68 to 963       896/963
(93 %)
8 diff
(99.2 %id)
F06213 brain, total brain .a 944 to 1224 1 to 281       281/281
(100 %)
3 diff
(99.0 %id)
BI090778 cervix .a 944 to 1555 1 to 615       615/932
(65 %)
15 diff
(98.4 %id)
CN421347 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 946 to 1647 9 to 710       702/710
(98 %)
0 diff
(100 %id)
R09583 liver and spleen .a 946 to 1261 1 to 317       317/404
(78 %)
5 diff
(98.8 %id)
BM922127 pooled brain, lung, testis .a 948 to 1885 1 to 944       944/985
(95 %)
8 diff
(99.2 %id)
CR620322 HeLa cells Cot 25-normalized .a 949 to 2137 1 to 1189 exact     1189/1189
(100 %)
0 diff
(100 %id)
BX344646   .a 949 to 1620 1 to 672   fully sequenced,   672/672
(100 %)
1 diff
(99.9 %id)
BE543986 cervical carcinoma cell line, cervix .a 953 to 1674 1 to 718       718/718
(100 %)
6 diff
(99.2 %id)
DN917471   .a 954 to 1476 1 to 523       523/523
(100 %)
2 diff
(99.7 %id)
BM820797 Ascites, stomach .a 955 to 1503 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
BU177223 melanotic melanoma, skin .a 958 to 1763 1 to 811       811/811
(100 %)
11 diff
(98.7 %id)
CV024460 mixed .a 963 to 1591 1 to 630       630/635
(99 %)
2 diff
(99.7 %id)
CV027344 mixed .a 963 to 1350 1 to 388       388/389
(99 %)
1 diff
(99.8 %id)
TI_1948122143   .a 963 to 1620 141 to 798   fully sequenced,   658/798
(82 %)
0 diff
(100 %id)
TI_1948122153   .a 963 to 1620 128 to 785   fully sequenced,   658/785
(83 %)
1 diff
(99.9 %id)
TI_1948122316.
matches multiple genes
  .a 963 to 1827 135 to 1000     also hits gene CDK7PS 866/1347
(64 %)
22 diff
(98.4 %id)
TI_1948122326   .a 963 to 1520 131 to 688   fully sequenced,   558/688
(81 %)
1 diff
(99.9 %id)
TI_1948122496   .a 963 to 1620 128 to 785   fully sequenced,   658/785
(83 %)
0 diff
(100 %id)
TI_1948122504.
matches multiple genes
  .a 963 to 1827 129 to 993     also hits gene CDK7PS 865/1359
(63 %)
19 diff
(98.7 %id)
TI_1948122673   .a 963 to 1520 138 to 695   fully sequenced,   558/695
(80 %)
1 diff
(99.9 %id)
R09613 liver and spleen .a 971 to 1088 1 to 118       118/127
(92 %)
3 diff
(97.7 %id)
BF812297 colon_ins .a 975 to 1240 271 to 6     Submitted on the opposite strand 266/271
(98 %)
3 diff
(98.9 %id)
BF677622 Prostate .a 984 to 1589 1 to 607       607/902
(67 %)
6 diff
(99.4 %id)
F06110 brain, total brain .a 987 to 1324 1 to 338       338/338
(100 %)
2 diff
(99.5 %id)
F11149 brain, total brain .a 987 to 1325 1 to 339       339/339
(100 %)
1 diff
(99.8 %id)
R22624 placenta .a 987 to 1294 1 to 313       311/320
(97 %)
8 diff
(97.5 %id)
H95020.
matches multiple genes
placenta .a 987 to 1423 1 to 444     also hits gene POLR1D 444/447
(99 %)
17 diff
(96.2 %id)
CD244941 White Matter .a 1027 to 1589 11 to 577       567/1087
(52 %)
17 diff
(98.5 %id)
BI089114 cervix .a 1035 to 1880 1 to 848       849/857
(99 %)
17 diff
(98.1 %id)
H73988 liver and spleen .a 1089 to 1466 22 to 414       393/466
(84 %)
19 diff
(96.0 %id)
CV338862 breast .a 1108 to 1719 1 to 610       610/611
(99 %)
7 diff
(98.9 %id)
CV338863 breast .a 1108 to 1726 1 to 614       614/614
(100 %)
11 diff
(98.3 %id)
CV338861 breast .a 1116 to 1737 622 to 4     Submitted on the opposite strand 619/639
(96 %)
8 diff
(98.8 %id)
CV338864 breast .a 1116 to 1672 579 to 25     Submitted on the opposite strand 555/594
(93 %)
12 diff
(98.0 %id)
BQ305576 breast .a 1119 to 1660 13 to 553       541/553
(97 %)
11 diff
(98.1 %id)
BQ305444 breast .a 1122 to 1708 15 to 603       589/603
(97 %)
10 diff
(98.4 %id)
BQ305606 breast .a 1122 to 1737 1 to 615       615/625
(98 %)
10 diff
(98.4 %id)
AL556804.
matches multiple genes
placenta .a 1122 to 1882 97 to 856     also hits gene CDK7PS 760/856
(88 %)
8 diff
(99.1 %id)
CV338859 breast .a 1122 to 1720 1 to 599       599/599
(100 %)
2 diff
(99.7 %id)
BQ305609 breast .a 1123 to 1737 608 to 3       610/648
(94 %)
17 diff
(97.4 %id)
BM847586 myeloma .a 1127 to 1670 1 to 543       543/543
(100 %)
1 diff
(99.9 %id)
BQ305441 breast .a 1128 to 1674 1 to 547       547/547
(100 %)
14 diff
(97.5 %id)
BG874708 breast_normal .a 1143 to 1527 23 to 404       382/432
(88 %)
6 diff
(98.7 %id)
CV338860 breast .a 1161 to 1737 578 to 3     Submitted on the opposite strand 576/578
(99 %)
2 diff
(99.7 %id)
AI472632 follicular lymphoma, lymph node .a 1174 to 1472 1 to 300     Submitted on the opposite strand 300/300
(100 %)
1 diff
(99.7 %id)
CN421348 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1182 to 1809 9 to 637       629/637
(98 %)
2 diff
(99.7 %id)
AA032043 uterus .a 1209 to 1716 1 to 510       510/510
(100 %)
4 diff
(99.3 %id)
BI914644 brain .a 1214 to 2011 1 to 800       798/800
(99 %)
4 diff
(99.5 %id)
TI_57240760   .a 1214 to 2011 27 to 826       798/826
(96 %)
4 diff
(99.6 %id)
BF793270 adrenal cortex carcinoma, cell line, adrenal gland .a 1232 to 1970 1 to 735       735/766
(95 %)
9 diff
(98.9 %id)
BM793632 Ascites, stomach .a 1244 to 1682 1 to 439       439/439
(100 %)
1 diff
(99.8 %id)
CN421350 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1249 to 1832 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BE536284 cervix .a 1258 to 1740 1 to 487       487/487
(100 %)
13 diff
(97.4 %id)
BU181269 large cell carcinoma, lung .a 1259 to 1970 11 to 735       725/796
(91 %)
23 diff
(97.2 %id)
TI_227717025   .a 1270 to 2185 1004 to 104   AAA   901/992
(90 %)
24 diff
(97.6 %id)
BE535830 cervix .a 1281 to 1881 1 to 599       599/599
(100 %)
5 diff
(99.2 %id)
EH330448.
matches multiple genes
  .a 1313 to 1364 1 to 52     also hits gene CDK7PS 52/52
(100 %)
0 diff
(100 %id)
BM792536 Ascites, stomach .a 1337 to 1958 1 to 622       622/622
(100 %)
1 diff
(99.9 %id)
TI_227714010   .a 1358 to 2178 918 to 112       807/1050
(76 %)
33 diff
(96.9 %id)
TI_154104130   .a 1367 to 2168 843 to 55   AAA   789/933
(84 %)
15 diff
(98.4 %id)
TI_154110521   .a 1367 to 2168 860 to 73   AAA   788/935
(84 %)
18 diff
(98.1 %id)
TI_154122713   .a 1367 to 2168 868 to 82   AAA   787/963
(81 %)
20 diff
(98.0 %id)
TI_154126682   .a 1367 to 2168 883 to 94   AAA   790/959
(82 %)
11 diff
(98.9 %id)
TI_227713987   .a 1367 to 2178 909 to 111       799/1069
(74 %)
29 diff
(97.3 %id)
BI093273 cervix .a 1378 to 2062 1 to 681       681/681
(100 %)
7 diff
(99.0 %id)
TI_159690336   .a 1388 to 2059 809 to 140   AAA   670/972
(68 %)
23 diff
(97.7 %id)
CD364376 Alveolar Macrophage, lung .a 1397 to 2185 800 to 19   AAA   782/782
(100 %)
9 diff
(98.9 %id)
CN479963 Chondrosarcoma, Left Pubic Bone .a 1416 to 2168 759 to 14   AAA   746/746
(100 %)
7 diff
(99.1 %id)
BQ305433 breast .a 1442 to 1727 288 to 4       285/288
(98 %)
1 diff
(99.7 %id)
CA310644 Human Lung Epithelial cells, lung .a 1452 to 2168 727 to 14   AAA   714/714
(100 %)
2 diff
(99.8 %id)
TI_154026321   .a 1453 to 2168 792 to 87   AAA   708/706
(100 %)
12 diff
(98.4 %id)
CA416765 Chondrosarcoma Cell line .a 1453 to 2168 726 to 14   AAA   713/713
(100 %)
2 diff
(99.8 %id)
TI_1948122327   .a 1459 to 2002 669 to 126   fully sequenced,   544/669
(81 %)
0 diff
(100 %id)
TI_1948122674   .a 1459 to 2002 667 to 124   fully sequenced,   544/667
(81 %)
0 diff
(100 %id)
AW800417 uterus .a 1460 to 1677 247 to 30       218/260
(83 %)
0 diff
(100 %id)
BQ007571 Chondrosarcoma, Left Pubic Bone .a 1469 to 2183 730 to 19   AAA   712/712
(100 %)
4 diff
(99.5 %id)
BF109697 pooled .a 1471 to 2173 705 to 2       704/706
(99 %)
9 diff
(98.8 %id)
W19241 lung .a 1488 to 1794 1 to 308   fully sequenced,   308/308
(100 %)
1 diff
(99.7 %id)
AI689297 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 1488 to 2168 679 to 1       679/682
(99 %)
22 diff
(96.8 %id)
CA440168 lung, Metastatic Chondrosarcoma .a 1488 to 2168 687 to 14   AAA   676/685
(98 %)
8 diff
(98.9 %id)
BQ776285 Bone, Human Chondrosarcoma Cell Line .a 1488 to 2168 693 to 14   AAA   680/739
(92 %)
2 diff
(99.8 %id)
BQ363023 stomach .a 1511 to 2037 1 to 525       525/526
(99 %)
27 diff
(94.9 %id)
H49504 liver and spleen .a 1514 to 1666 1 to 153       153/153
(100 %)
5 diff
(96.8 %id)
CA446290 Chondrosarcoma, Left Pubic Bone .a 1518 to 2168 664 to 14   AAA   651/651
(100 %)
0 diff
(100 %id)
CA423628 cell lines, Chondrosarcoma .a 1519 to 2168 668 to 19   AAA   650/650
(100 %)
0 diff
(100 %id)
AW169116 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1521 to 2168 645 to 1       645/645
(100 %)
7 diff
(99.0 %id)
CA426393 cell lines, Chondrosarcoma .a 1524 to 2168 659 to 14   AAA   646/646
(100 %)
4 diff
(99.4 %id)
BU953998 mixed (pool of 40 RNAs) .a 1531 to 1814 1 to 284       284/296
(95 %)
3 diff
(99.0 %id)
BU069814 insulinoma, Pancreas .a 1536 to 2168 648 to 16   AAA   633/633
(100 %)
0 diff
(100 %id)
BP423438 small intestine .a 1552 to 1983 1 to 432     Submitted on the opposite strand 432/432
(100 %)
0 diff
(100 %id)
BX350838 Neuroblastoma Cot 25-normalized .a 1559 to 2166 604 to 1   fully sequenced,   604/604
(100 %)
8 diff
(98.7 %id)
BX402977   .a 1559 to 2137 579 to 1   fully sequenced,   579/579
(100 %)
4 diff
(99.4 %id)
TI_1948122144   .a 1559 to 2002 568 to 125   fully sequenced,   444/568
(78 %)
0 diff
(100 %id)
TI_1948122154   .a 1559 to 2002 570 to 127   fully sequenced,   444/570
(77 %)
0 diff
(100 %id)
TI_1948122497   .a 1559 to 2002 567 to 124   fully sequenced,   444/567
(78 %)
0 diff
(100 %id)
CK902374 insulinoma, Pancreas .a 1563 to 2147 585 to 1       584/585
(99 %)
6 diff
(99.0 %id)
AI189206 placenta .a 1582 to 2291 714 to 5       710/794
(89 %)
17 diff
(97.9 %id)
AA648307 germinal center B cell .a 1588 to 2168 598 to 15   AAA   584/587
(99 %)
11 diff
(98.2 %id)
TI_154049837   .a 1588 to 2192 695 to 91   AAA   605/913
(66 %)
25 diff
(97.3 %id)
CA305960 Alveolar Macrophage, lung .a 1590 to 2185 615 to 19   AAA   597/597
(100 %)
0 diff
(100 %id)
AI198589   .a 1592 to 2171 580 to 1       580/580
(100 %)
16 diff
(97.3 %id)
AL037493 brain .a 1595 to 2168 590 to 16   AAA   575/736
(78 %)
1 diff
(99.9 %id)
AW518202 lymph node, lymphoma, follicular mixed small and largecell .a 1596 to 2186 595 to 6       590/595
(99 %)
22 diff
(96.4 %id)
BF131411 hypernephroma, Kidney .a 1600 to 2169 1 to 568   AAA   568/568
(100 %)
4 diff
(99.3 %id)
CD679101 eye, Trabecular meshwork .a 1612 to 2163 1 to 552   AAA   552/552
(100 %)
0 diff
(100 %id)
AW292736   .a 1620 to 2168 562 to 13   AAA   550/550
(100 %)
1 diff
(99.9 %id)
TI_149279849   .a 1620 to 2168 626 to 78   AAA   549/1183
(46 %)
2 diff
(99.9 %id)
BU678923 lung, Primary Lung Epithelial Cells .a 1620 to 2168 562 to 14   AAA   549/553
(99 %)
2 diff
(99.7 %id)
BU752721 placenta .a 1634 to 2168 547 to 13   AAA   535/535
(100 %)
1 diff
(99.9 %id)
AA862157 squamous cell carcinoma from base of tongue, tongue .a 1649 to 2169 516 to 1       516/516
(100 %)
8 diff
(98.5 %id)
BG495597 lung, mucoepidermoid carcinoma .a 1649 to 2147 1 to 507       504/855
(58 %)
19 diff
(97.8 %id)
BU634020 cell lines, Chondrosarcoma .a 1649 to 2192 562 to 19   AAA   544/544
(100 %)
0 diff
(100 %id)
CA435215 lung, Metastatic Chondrosarcoma .a 1659 to 2168 523 to 14   AAA   510/510
(100 %)
0 diff
(100 %id)
AA181981   .a 1661 to 2168 528 to 14   AAA   515/515
(100 %)
11 diff
(97.9 %id)
BU631128 cell lines, Chondrosarcoma .a 1662 to 2283 640 to 19   AAA   622/622
(100 %)
0 diff
(100 %id)
AA902957 leiomyosarcoma, soft tissue .a 1676 to 2168 506 to 16   AAA   491/499
(98 %)
2 diff
(99.6 %id)
BF590314 pooled .a 1676 to 1998 323 to 1       323/328
(98 %)
7 diff
(97.9 %id)
AA767327 germinal center B cell .a 1677 to 2168 506 to 15   AAA   492/492
(100 %)
4 diff
(99.2 %id)
AA862156 squamous cell carcinoma from base of tongue, tongue .a 1677 to 2168 491 to 1       491/491
(100 %)
13 diff
(97.4 %id)
AI277799 placenta .a 1677 to 2171 495 to 1       495/495
(100 %)
0 diff
(100 %id)
BQ010712 placenta .a 1677 to 2168 505 to 13   AAA   493/493
(100 %)
3 diff
(99.4 %id)
BQ013338 placenta .a 1680 to 2165 504 to 19   AAA   486/486
(100 %)
1 diff
(99.8 %id)
AW517782 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1681 to 2192 503 to 1       503/503
(100 %)
25 diff
(95.1 %id)
N52079 multiple sclerosis lesions .a 1684 to 2168 490 to 1       490/490
(100 %)
6 diff
(98.8 %id)
AI299652 carcinoid, lung .a 1689 to 2167 479 to 1       479/479
(100 %)
7 diff
(98.6 %id)
DN917470   .a 1691 to 1858 174 to 7       168/174
(96 %)
0 diff
(100 %id)
H49505 liver and spleen .a 1697 to 2165 488 to 6       483/593
(81 %)
24 diff
(96.0 %id)
AI311067 2 pooled tumors (clear cell type), Kidney .a 1701 to 2173 475 to 3       473/475
(99 %)
0 diff
(100 %id)
AI004727   .a 1705 to 2173 472 to 4       469/473
(99 %)
0 diff
(100 %id)
AA993666   .a 1710 to 2193 486 to 3       484/486
(99 %)
15 diff
(97.0 %id)
AI291351 placenta .a 1713 to 2168 472 to 17   AAA   456/456
(100 %)
0 diff
(100 %id)
AA634429   .a 1715 to 2202 487 to 1       487/487
(100 %)
3 diff
(99.4 %id)
AI000697   .a 1715 to 2178 464 to 2       463/464
(99 %)
5 diff
(99.0 %id)
AI972961 Prostate .a 1721 to 2171 452 to 1       452/452
(100 %)
5 diff
(98.9 %id)
AW342034 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1728 to 2170 443 to 1       443/443
(100 %)
2 diff
(99.6 %id)
AA041553 uterus .a 1729 to 2165 442 to 1       442/442
(100 %)
5 diff
(98.9 %id)
AA496026   .a 1731 to 2193 468 to 5       464/468
(99 %)
6 diff
(98.8 %id)
AA948363 2 pooled tumors (clear cell type), Kidney .a 1731 to 2173 444 to 1       444/444
(100 %)
5 diff
(98.9 %id)
AA991222 2 pooled tumors (clear cell type), Kidney .a 1731 to 2193 470 to 8       463/470
(98 %)
5 diff
(99.0 %id)
AA258118 germinal center B cell .a 1746 to 2168 423 to 1       423/423
(100 %)
1 diff
(99.8 %id)
AI971556 pooled germ cell tumors .a 1749 to 2168 444 to 25   AAA   420/420
(100 %)
5 diff
(98.9 %id)
N89925 lung .a 1764 to 2168 407 to 1   fully sequenced,   407/407
(100 %)
5 diff
(98.8 %id)
BE883105 leiomyosarcoma, uterus .a 1780 to 2291 1 to 513       513/917
(55 %)
10 diff
(99.0 %id)
TI_154016547   .a 1796 to 2297 586 to 85   AAA   502/938
(53 %)
1 diff
(99.9 %id)
CA437275 lung, Metastatic Chondrosarcoma .a 1802 to 2297 514 to 19   tiling clone, AAA   496/496
(100 %)
1 diff
(99.8 %id)
AI017756   .a 1804 to 2170 367 to 1       367/367
(100 %)
0 diff
(100 %id)
AA937974 germinal center B cell .a 1812 to 2291 486 to 8       479/486
(98 %)
2 diff
(99.6 %id)
AA031961 uterus .a 1826 to 2164 340 to 1       340/347
(97 %)
1 diff
(99.8 %id)
AA877698 colon, colon tumor RER+ .a 1827 to 1998 172 to 1       172/172
(100 %)
4 diff
(97.7 %id)
AI581889 colon .a 1827 to 2284 459 to 3       457/459
(99 %)
0 diff
(100 %id)
BG940929 blood .a 1833 to 2163 363 to 33   AAA   331/331
(100 %)
1 diff
(99.7 %id)
DB566635 hypothalamus .a 1843 to 2289 1 to 447     Submitted on the opposite strand 447/447
(100 %)
0 diff
(100 %id)
H94003.
matches multiple genes
placenta .a 1857 to 1998 142 to 1     also hits gene POLR1D 142/142
(100 %)
0 diff
(100 %id)
F02366 brain, total brain .a 1866 to 2163 298 to 1       298/298
(100 %)
0 diff
(100 %id)
R22625 placenta .a 1879 to 2164 290 to 1       290/319
(90 %)
10 diff
(96.9 %id)
H73943 liver and spleen .a 1884 to 2163 284 to 1       284/398
(71 %)
6 diff
(98.5 %id)
F08820 brain, total brain .a 1885 to 2163 279 to 1       279/279
(100 %)
2 diff
(99.3 %id)
R09488 liver and spleen .a 1892 to 2157 269 to 1       269/312
(86 %)
3 diff
(99.1 %id)
BF512605   .a 1894 to 2168 287 to 13   AAA   275/275
(100 %)
0 diff
(100 %id)
DB558505 hypothalamus .a 1903 to 2289 1 to 407     Submitted on the opposite strand 407/407
(100 %)
64 diff
(84.3 %id)
AA748836 germinal center B cell .a 1978 to 2168 217 to 27   AAA   191/191
(100 %)
0 diff
(100 %id)
AA244456   .a 2060 to 2186 148 to 22   AAA   127/127
(100 %)
0 diff
(100 %id)
L20320 breast .b 1 to 1380 1 to 1380 exact tiling clone,   1380/1381
(99 %)
2 diff
(99.9 %id)
CR746502 leiomyosarcoma, uterus .b 61 to 545 4 to 488       485/488
(99 %)
6 diff
(98.8 %id)
CR747479 melanotic melanoma, skin .b 61 to 585 4 to 528       525/528
(99 %)
6 diff
(98.9 %id)
BQ424520 leiomyosarcoma, uterus .b 71 to 890 1 to 826       826/910
(90 %)
11 diff
(98.8 %id)
BI831473 brain, medulla .c 1 to 858 1 to 855   tiling clone,   855/855
(100 %)
7 diff
(99.2 %id)
TI_57172306   .c 1 to 858 69 to 923       855/923
(92 %)
7 diff
(99.3 %id)
BP244841 Kidney .c 24 to 599 1 to 578       578/583
(99 %)
5 diff
(99.2 %id)
BX341190   .c 60 to 813 1 to 753   fully sequenced,   753/753
(100 %)
6 diff
(99.3 %id)
CR600515 T cells (Jurkat cell line) Cot10-normalized .c 61 to 1357 1 to 1297 exact tiling clone,   1297/1297
(100 %)
0 diff
(100 %id)
CB106805 Liver .c 65 to 495 1 to 431       431/431
(100 %)
2 diff
(99.6 %id)
CD103580 Pooled-Skin .c 68 to 776 1 to 709       709/713
(99 %)
4 diff
(99.5 %id)
BM544802 brain, hippocampus .c 79 to 719 76 to 727       616/1270
(48 %)
27 diff
(97.9 %id)
BQ425126 melanotic melanoma, skin .c 140 to 1005 1 to 869       869/872
(99 %)
5 diff
(99.5 %id)
BX373989   .c 752 to 1338 604 to 18   fully sequenced,   587/604
(97 %)
1 diff
(99.9 %id)
AA082449 heart .d 1 to 229 1 to 229   tiling clone,   229/229
(100 %)
3 diff
(98.7 %id)
AA062916 heart .d 479 to 1074 592 to 2   tiling clone,   591/647
(91 %)
7 diff
(99.0 %id)
BU660651 blood .e 1 to 728 10 to 737 exact tiling clone,   728/737
(98 %)
1 diff
(99.9 %id)
CN421349 embryonic stem cells, DMSO-treated H9 cellline .e 11 to 722 1 to 712       712/712
(100 %)
6 diff
(99.2 %id)
BG540759 lung .e 14 to 705 1 to 682       682/829
(82 %)
36 diff
(95.7 %id)
AW949634   .e 42 to 603 155 to 718       564/733
(76 %)
28 diff
(96.2 %id)
T28994 blood, white blood cells .e 42 to 410 1 to 378       376/409
(91 %)
12 diff
(97.1 %id)
DR159521 human embryonic stem cells differentiated toan early endodermal cell type .f -9 to 808 1 to 816 exact tiling clone,   816/816
(100 %)
2 diff
(99.8 %id)
CB144555 Liver .f 51 to 401 1 to 351       351/351
(100 %)
4 diff
(98.9 %id)
AK308493   .g 1 to 905 2 to 906 exact tiling clone,   906/906
(100 %)
1 diff
(99.9 %id)
DA028099   .g 1 to 573 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
CD522895 pooled .g 26 to 803 1 to 780 L150R     780/855
(91 %)
24 diff
(97.2 %id)
BG943935 blood .h 1 to 486 1 to 486 T22I tiling clone,   486/486
(100 %)
1 diff
(99.8 %id)
BX490410   .i 1 to 474 1 to 474 R2X S3X tiling clone,   477/477
(100 %)
0 diff
(100 %id)
CN402797 embryonic stem cells, cell lines H1, H7, andH9 .j 1 to 255 1 to 255 exact tiling clone,   255/255
(100 %)
0 diff
(100 %id)
BI824578 pooled brain, lung, testis .k 1 to 655 1 to 658 V23D V24C Q25P S26V G27W ... tiling clone,   658/842
(78 %)
19 diff
(97.8 %id)
TI_57196751   .k 1 to 781 44 to 833 V23D V24C Q25P S26V G27W ... tiling clone, AAA   747/876
(85 %)
29 diff
(96.7 %id)
DW428603 Liver .l 1 to 261 15 to 275   tiling clone,   261/275
(94 %)
1 diff
(99.7 %id)
AW861260 colon .l 166 to 419 260 to 13   tiling clone,   248/262
(94 %)
0 diff
(100 %id)
TI_57236193   .m 1 to 860 26 to 890 D7G M8H W9V A10G V11C ... tiling clone,   865/919
(94 %)
16 diff
(98.3 %id)
BI910316 leukocyte .m 5 to 860 1 to 861 D7G M8H W9V A10G V11C ... tiling clone,   861/890
(96 %)
17 diff
(98.1 %id)
AV657441 corresponding non cancerous liver tissue .m 23 to 377 1 to 355     Submitted on the opposite strand 355/356
(99 %)
10 diff
(97.2 %id)
BG820496 anaplastic oligodendroglioma with 1p/19qloss, brain .n 1 to 566 1 to 566 exact tiling clone,   566/566
(100 %)
0 diff
(100 %id)
DA526444 brain .o-u 1 to 419 2 to 419 exact tiling clone, capped   418/429
(97 %)
3 diff
(99.4 %id)
TI_1948122317.
matches multiple genes
  PS.a-u 33 to 969 1083 to 124     also hits gene CDK7PS 960/1196
(80 %)
0 diff
(100 %id)
TI_1948122666.
matches multiple genes
  PS.a-u 108 to 969 993 to 125     This clone was ignored, also hits gene CDK7PS 869/1212
(71 %)
0 diff
(100 %id)
TI_1948122505.
matches multiple genes
  PS.a-u 113 to 969 995 to 125     also hits gene CDK7PS 871/1210
(71 %)
0 diff
(100 %id)
AL579061.
matches multiple genes
placenta PS.a-u 128 to 1105 987 to 1     also hits gene CDK7PS 987/987
(100 %)
77 diff
(92.2 %id)
EH330448.
matches multiple genes
  PS.a-u 288 to 339 1 to 52     also hits gene CDK7PS 52/52
(100 %)
0 diff
(100 %id)
BI520824.
matches multiple genes
brain, medulla PS.a-u 290 to 1061 834 to 20     also hits gene CDK7PS 815/1285
(63 %)
0 diff
(100 %id)
TI_43963553.
matches multiple genes
  PS.a-u 290 to 1061 834 to 20     also hits gene CDK7PS 815/1285
(63 %)
0 diff
(100 %id)
AV715583   Gene CDK7, variant not shown         Suspected internal deletion, this clone was ignored    
BM724209 eye, fetal eye Gene CDK7, variant not shown         Suspected internal deletion, this clone was ignored    
AV761526 bone marrow Gene CDK7, variant not shown         This clone was ignored    
BE814673 breast_normal Gene CDK7, variant not shown         Suspected internal deletion, this clone was ignored    
R53670 whole brain Gene CDK7, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
BG620623 placenta Gene CDK7, variant not shown         Suspected internal deletion, this clone was ignored    
BM544823 brain, hippocampus Gene CDK7, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI