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Gene CDH2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
319 supporting clones for gene CDH2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CN281357 embryonic stem cells, cell lines H1, H7, andH9 .a 1 to 254 1 to 254   tiling clone,   254/254
(100 %)
1 diff
(99.7 %id)
AI752179 Bone, Hip .a 99 to 631 1 to 538   tiling clone,   538/538
(100 %)
10 diff
(98.2 %id)
NM_001792.3   .a 306 to 4672 1 to 4367   RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 4367/4367
(100 %)
2 diff
(100.0 %id)
S42303   .a 343 to 4436 40 to 4132 L12P P13L L15A A17L L19Q ... tiling clone,   4093/4132
(99 %)
16 diff
(99.7 %id)
DA326233 hippocampus .a 371 to 644 2 to 275   capped   274/274
(100 %)
1 diff
(99.7 %id)
DA225616 brain .a 529 to 1081 2 to 554   tiling clone, capped   553/553
(100 %)
1 diff
(99.9 %id)
AI752180 Bone, Hip .a 560 to 963 414 to 8       407/414
(98 %)
2 diff
(99.6 %id)
DB468925 hippocampus .a 636 to 936 1 to 301       301/421
(71 %)
3 diff
(99.3 %id)
DA411524 thalamus .a 643 to 1199 2 to 560   capped   559/559
(100 %)
5 diff
(99.2 %id)
CN263272 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 643 to 1362 11 to 730   tiling clone,   720/730
(98 %)
6 diff
(99.2 %id)
DA394895 thalamus .a 646 to 1246 2 to 603   capped   602/602
(100 %)
1 diff
(99.9 %id)
DA789024 brain .a 646 to 1228 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA803938 brain .a 646 to 1179 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DB068537 testis .a 646 to 1189 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
CN263269 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 647 to 1311 9 to 675       667/680
(98 %)
9 diff
(98.7 %id)
BI547033 brain, hippocampus .a 649 to 1317 1 to 678       678/781
(86 %)
25 diff
(96.8 %id)
BI549642 brain, hippocampus .a 649 to 1437 1 to 793       793/793
(100 %)
17 diff
(97.9 %id)
TI_44167713   .a 650 to 1317 82 to 758       677/861
(78 %)
30 diff
(96.6 %id)
TI_44170849   .a 650 to 1437 132 to 923       792/923
(85 %)
19 diff
(98.0 %id)
BI461974 testis .a 655 to 1471 1 to 825       825/845
(97 %)
26 diff
(97.0 %id)
BC036470 Brain, hippocampus .a 657 to 4666 9 to 4017 P164S P437Q T454A V484M D629G tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 4009/4009
(100 %)
12 diff
(99.8 %id)
DA801914 brain .a 657 to 1147 2 to 492   capped   491/491
(100 %)
0 diff
(100 %id)
DA809858 brain .a 657 to 1223 2 to 571   capped   570/570
(100 %)
4 diff
(99.3 %id)
DB079197 testis .a 657 to 1235 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB094167 testis .a 657 to 1204 2 to 549   capped   548/548
(100 %)
5 diff
(99.1 %id)
DA105768 cerebellum .a 660 to 1249 2 to 592   capped   591/591
(100 %)
4 diff
(99.4 %id)
DA723572   .a 660 to 1211 2 to 554   capped   553/553
(100 %)
3 diff
(99.5 %id)
DA723805   .a 660 to 1231 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
BP332532 renal proximal tubule .a 660 to 1223 1 to 564       564/582
(96 %)
3 diff
(99.5 %id)
DB066389 testis .a 660 to 1164 2 to 507   capped   506/509
(99 %)
5 diff
(99.1 %id)
DA238617 brain .a 661 to 1252 2 to 594   capped   593/593
(100 %)
2 diff
(99.7 %id)
DA508377 brain .a 661 to 1236 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB095438 testis .a 661 to 1225 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BP247072 Kidney .a 662 to 1223 1 to 562       562/587
(95 %)
1 diff
(99.9 %id)
BP248365 Kidney .a 662 to 1223 1 to 562       562/583
(96 %)
6 diff
(99.0 %id)
BP229301 brain .a 664 to 1245 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
X54315   .a 666 to 3516 3 to 2853 A16L S196T N357I     2851/2853
(99 %)
12 diff
(99.6 %id)
DB085712 testis .a 669 to 1236 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
CN263271 embryonic stem cells, cell lines H1, H7, andH9 .a 674 to 1322 1 to 649       649/649
(100 %)
2 diff
(99.7 %id)
DA723959   .a 674 to 1225 2 to 557   capped   556/556
(100 %)
5 diff
(99.2 %id)
DA805404 brain .a 674 to 1240 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
CN263262 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 676 to 1378 1 to 703       703/703
(100 %)
1 diff
(99.9 %id)
DA226298 brain .a 677 to 1314 2 to 639   capped   638/638
(100 %)
0 diff
(100 %id)
BP366113 lung .a 679 to 1260 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DA101020 cerebellum .a 680 to 1282 2 to 605   capped   602/604
(99 %)
2 diff
(99.7 %id)
DA406214 thalamus .a 680 to 1242 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA616439   .a 680 to 1279 2 to 599   capped   598/598
(100 %)
3 diff
(99.5 %id)
DA725067   .a 680 to 1235 2 to 558   capped   555/557
(99 %)
2 diff
(99.7 %id)
DA759258   .a 680 to 1221 2 to 545   capped   544/544
(100 %)
3 diff
(99.5 %id)
DA759654   .a 680 to 1188 2 to 511   capped   508/510
(99 %)
2 diff
(99.7 %id)
DA809117 brain .a 680 to 1216 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DB066914 testis .a 680 to 1154 2 to 477   capped   474/476
(99 %)
1 diff
(99.8 %id)
DB151803 thymus .a 680 to 997 2 to 319   capped   318/318
(100 %)
1 diff
(99.7 %id)
DA119077 cerebellum .a 681 to 1247 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA709538   .a 681 to 1248 2 to 572   capped   571/571
(100 %)
4 diff
(99.3 %id)
DN999979   .a 682 to 1399 9 to 727       719/727
(98 %)
10 diff
(98.7 %id)
DA759822   .a 688 to 1234 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA801357 brain .a 689 to 1256 2 to 570   capped   567/569
(99 %)
1 diff
(99.9 %id)
DB086017 testis .a 689 to 1245 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
CN263268 embryonic stem cells, cell lines H1, H7, andH9 .a 692 to 1185 1 to 494       494/494
(100 %)
3 diff
(99.4 %id)
DA800116 brain .a 697 to 1255 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB459756 testis .a 700 to 1140 1 to 441       441/441
(100 %)
0 diff
(100 %id)
DA808505 brain .a 700 to 1275 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA810636 brain .a 701 to 1251 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DR155478 human embryonic stem cells differentiated toan early endodermal cell type .a 716 to 1568 1 to 853       853/853
(100 %)
0 diff
(100 %id)
CN263278 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 726 to 1453 1 to 728       728/728
(100 %)
1 diff
(99.9 %id)
CN263263 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 736 to 1481 1 to 746       746/746
(100 %)
4 diff
(99.5 %id)
TI_159701892   .a 737 to 1471 52 to 780     Submitted on the opposite strand 729/1040
(70 %)
17 diff
(98.4 %id)
DA335210 hippocampus .a 740 to 1332 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DA757963   .a 740 to 1280 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA811068 brain .a 751 to 1307 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA185555 amygdala .a 752 to 1301 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB089484 testis .a 752 to 1299 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
CN263281 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 753 to 1332 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DB470328 hippocampus .a 758 to 1187 1 to 432       432/432
(100 %)
9 diff
(98.0 %id)
DB472306 hippocampus .a 759 to 1244 1 to 486       486/486
(100 %)
0 diff
(100 %id)
EL733845 mixed .a 765 to 1420 1 to 654       654/654
(100 %)
4 diff
(99.4 %id)
DA811518 brain .a 765 to 1319 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA245822 brain .a 766 to 1349 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA801753 brain .a 766 to 1259 2 to 495   capped   494/494
(100 %)
0 diff
(100 %id)
AL046467 testis .a 767 to 1302 1 to 537       537/537
(100 %)
2 diff
(99.7 %id)
DA247816 brain .a 768 to 1355 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA320432 hippocampus .a 768 to 1295 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
CX871059 embryonic stem .a 768 to 1481 1 to 714       714/714
(100 %)
0 diff
(100 %id)
DB078757 testis .a 768 to 1344 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DR158946 human embryonic stem cells differentiated toan early endodermal cell type .a 770 to 1550 1 to 781       781/781
(100 %)
0 diff
(100 %id)
DA409731 thalamus .a 772 to 1322 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB038656 testis .a 773 to 1266 2 to 497   capped   496/496
(100 %)
2 diff
(99.6 %id)
DA330101 hippocampus .a 783 to 1340 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA186510 amygdala .a 817 to 1332 26 to 541   capped   516/540
(95 %)
6 diff
(98.9 %id)
BI460696 testis .a 817 to 1333 141 to 656       516/657
(78 %)
8 diff
(98.8 %id)
DB100165 testis .a 822 to 1410 5 to 593   capped   589/592
(99 %)
6 diff
(99.0 %id)
CB143364 Liver .a 849 to 1280 432 to 1     Submitted on the opposite strand 432/432
(100 %)
0 diff
(100 %id)
DB064777 testis .a 931 to 1302 156 to 537   capped   390/536
(72 %)
9 diff
(98.4 %id)
DA800828 brain .a 932 to 1485 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA801472 brain .a 942 to 1431 2 to 491   capped   490/490
(100 %)
0 diff
(100 %id)
T07219   .a 996 to 1292 1 to 298       298/301
(99 %)
5 diff
(98.4 %id)
CD642439 Embryonic Stem cells .a 1010 to 1790 12 to 792       781/825
(94 %)
19 diff
(97.7 %id)
CN263265 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1048 to 1676 1 to 628       628/628
(100 %)
1 diff
(99.9 %id)
AU132015   .a 1122 to 1988 2 to 871   capped   870/870
(100 %)
5 diff
(99.5 %id)
DR762349 embryonic stem .a 1137 to 1981 1 to 845       845/845
(100 %)
0 diff
(100 %id)
BP229660 brain .a 1186 to 1766 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
DA193236 amygdala .a 1201 to 1791 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
CN263270 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1238 to 1939 1 to 702       702/702
(100 %)
2 diff
(99.8 %id)
M34064   .a 1242 to 4668 1 to 3429   tiling clone,   3429/3448
(99 %)
9 diff
(99.8 %id)
X57548   .a 1242 to 4668 1 to 3432       3430/3451
(99 %)
23 diff
(99.4 %id)
CN263260 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1243 to 1756 1 to 514       514/514
(100 %)
0 diff
(100 %id)
AI064969 Liver .a 1254 to 1889 1 to 636       636/636
(100 %)
1 diff
(99.9 %id)
DA799435 brain .a 1328 to 1886 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
BE932031 head_neck .a 1378 to 1807 10 to 439       430/439
(97 %)
6 diff
(98.7 %id)
BP233954 coronary artery .a 1391 to 1972 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA804968 brain .a 1393 to 1962 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA497192 brain .a 1394 to 1968 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BP205113 coronary artery .a 1398 to 1977 1 to 580       580/582
(99 %)
3 diff
(99.5 %id)
CX872344 embryonic stem .a 1456 to 2005 1 to 550       550/550
(100 %)
0 diff
(100 %id)
DA029689   .a 1491 to 2067 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
BP240124 Liver .a 1516 to 2087 1 to 571       571/571
(100 %)
5 diff
(99.2 %id)
CD557834 testis .a 1611 to 2325 35 to 755       721/864
(83 %)
16 diff
(98.2 %id)
BU852527 testis .a 1676 to 2213 1 to 548   tiling clone,   548/781
(70 %)
13 diff
(98.4 %id)
DA597654   .a 1789 to 2348 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA382892 thalamus .a 1800 to 2429 2 to 631   capped   630/631
(99 %)
3 diff
(99.6 %id)
DA029926   .a 1906 to 2463 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
CN263261 embryonic stem cells, DMSO-treated H9 cellline .a 1922 to 2561 1 to 640       640/640
(100 %)
1 diff
(99.9 %id)
DR159474 human embryonic stem cells differentiated toan early endodermal cell type .a 1936 to 2751 1 to 816       816/816
(100 %)
1 diff
(99.9 %id)
CX165665 human embryonic stem cells differentiated toan early endodermal cell type .a 1939 to 2748 23 to 832       810/832
(97 %)
7 diff
(99.2 %id)
BF959805 nervous_normal .a 1967 to 2310 346 to 3       344/346
(99 %)
0 diff
(100 %id)
BX477791   .a 2030 to 2695 1 to 666       666/666
(100 %)
3 diff
(99.6 %id)
BF970386 adrenal cortex carcinoma, cell line, adrenal gland .a 2058 to 2574 1 to 518       518/520
(99 %)
7 diff
(98.7 %id)
DA760668   .a 2086 to 2655 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
CN263275 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2125 to 2805 9 to 690       682/690
(98 %)
9 diff
(98.7 %id)
CV808279 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 2125 to 2927 1 to 807       807/887
(90 %)
30 diff
(96.7 %id)
BP202951 coronary artery .a 2158 to 2727 1 to 570       570/570
(100 %)
1 diff
(99.9 %id)
DA549914   .a 2217 to 2810 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
BQ638619 eye, retina .a 2247 to 2868 1 to 622       622/622
(100 %)
2 diff
(99.7 %id)
DA356026 subthalamic nucleus .a 2272 to 2831 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA545719   .a 2422 to 2991 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BU145526 dorsal root ganglia .a 2422 to 3228 1 to 818       818/881
(92 %)
20 diff
(97.8 %id)
BP267800 thyroid .a 2430 to 3007 1 to 579       579/579
(100 %)
2 diff
(99.7 %id)
BF529885 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2455 to 3210 1 to 750       750/785
(95 %)
23 diff
(97.1 %id)
CN263280 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2457 to 3089 1 to 633       633/633
(100 %)
1 diff
(99.9 %id)
DA031778   .a 2459 to 3045 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
BP257628 heart .a 2486 to 2969 1 to 484       484/578
(83 %)
9 diff
(98.5 %id)
T77501 whole brain .a 2530 to 2973 1 to 445     Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 445/631
(70 %)
11 diff
(98.3 %id)
AU120201 whole embryo, mainly body .a 2564 to 3368 2 to 806   capped   805/816
(98 %)
7 diff
(99.2 %id)
R58115   .a 2582 to 2836 1 to 255       255/255
(100 %)
7 diff
(97.3 %id)
BE178650 head_neck .a 2594 to 2781 1 to 182       182/198
(91 %)
9 diff
(95.5 %id)
AA090678   .a 2613 to 2794 1 to 176       176/183
(96 %)
8 diff
(95.7 %id)
BJ992592 hepatoblastoma .a 2623 to 3106 1 to 484       484/484
(100 %)
1 diff
(99.8 %id)
BP275076 Kidney .a 2664 to 3245 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
CN263267 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2667 to 3437 1 to 770       770/770
(100 %)
3 diff
(99.7 %id)
AI207705 Liver .a 2700 to 3277 43 to 620       578/620
(93 %)
8 diff
(98.8 %id)
BP258738 heart .a 2705 to 3271 1 to 568       568/568
(100 %)
2 diff
(99.7 %id)
CV806774 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 2742 to 3474 1 to 733       733/734
(99 %)
4 diff
(99.5 %id)
BJ992352 hepatoblastoma .a 2745 to 3240 1 to 496       496/496
(100 %)
1 diff
(99.8 %id)
BP207523 coronary artery .a 2756 to 3336 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
BQ277651 ovary, teratocarcinoma, cell line .a 2803 to 3780 1 to 980       980/1068
(91 %)
18 diff
(98.4 %id)
BG105211 adrenal cortex carcinoma, cell line, adrenal gland .a 2824 to 3581 1 to 753       753/999
(75 %)
29 diff
(97.1 %id)
TI_151774750   .a 2850 to 3277 76 to 503       428/1046
(40 %)
8 diff
(99.3 %id)
AL041311 testis .a 2858 to 3270 1 to 413       413/413
(100 %)
0 diff
(100 %id)
BF081566 amnion_normal .a 2885 to 3427 1 to 541       541/541
(100 %)
9 diff
(98.4 %id)
BG749763 eye, normal pigmented retinal epithelium .a 2934 to 3536 1 to 602       602/603
(99 %)
2 diff
(99.7 %id)
CN263277 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2949 to 3692 27 to 768       742/768
(96 %)
8 diff
(99.0 %id)
BM966740 Islets of Langerhans, Pancreas .a 3034 to 3597 1 to 564       564/564
(100 %)
0 diff
(100 %id)
N87392   .a 3037 to 3229 1 to 194       194/203
(95 %)
4 diff
(98.1 %id)
BP205487 coronary artery .a 3039 to 3620 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP197669 adrenal gland .a 3041 to 3614 1 to 574       574/574
(100 %)
2 diff
(99.7 %id)
BP194860 brain .a 3042 to 3624 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DR760592 embryonic stem .a 3049 to 3883 1 to 835       835/835
(100 %)
1 diff
(99.9 %id)
TI_154103224   .a 3070 to 3911 926 to 88   AAA   839/973
(86 %)
7 diff
(99.3 %id)
BP258703 heart .a 3073 to 3529 1 to 456       456/566
(80 %)
23 diff
(96.0 %id)
BF700368 brain, primitive neuroectoderm .a 3084 to 3755 1 to 673       673/813
(82 %)
17 diff
(98.0 %id)
BM693820 eye, lens .a 3099 to 3374 1 to 277   fully sequenced,   277/277
(100 %)
0 diff
(100 %id)
BG114649 duodenal adenocarcinoma, cell line, small intestine .a 3102 to 3751 1 to 655       655/1070
(61 %)
15 diff
(98.6 %id)
CN263264 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3112 to 3642 1 to 531       531/531
(100 %)
0 diff
(100 %id)
CN263274 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3114 to 3802 1 to 689       689/689
(100 %)
1 diff
(99.9 %id)
CN263283 embryonic stem cells, DMSO-treated H9 cellline .a 3117 to 3697 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
TI_154103557   .a 3117 to 3907 867 to 86   AAA   782/985
(79 %)
12 diff
(98.8 %id)
CK724900 Chondrosarcoma, Left Pubic Bone .a 3144 to 3911 781 to 15   AAA   767/767
(100 %)
2 diff
(99.8 %id)
W48793 senescent fibroblast .a 3183 to 3571 1 to 392   fully sequenced,   392/392
(100 %)
1 diff
(99.8 %id)
AI950214 pooled germ cell tumors .a 3183 to 3906 723 to 3       721/728
(99 %)
4 diff
(99.5 %id)
ES312022 frontal balding hair, skin .a 3223 to 3413 1 to 189       189/189
(100 %)
3 diff
(98.5 %id)
CN263273 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3230 to 3907 1 to 677       677/687
(98 %)
7 diff
(99.0 %id)
CN263276 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3231 to 3769 1 to 539       539/539
(100 %)
0 diff
(100 %id)
AI074445 liver and spleen .a 3255 to 3918 664 to 1       664/664
(100 %)
3 diff
(99.6 %id)
BQ435753 testis .a 3260 to 4073 1 to 813       813/813
(100 %)
7 diff
(99.2 %id)
CK725209 Chondrosarcoma, Left Pubic Bone .a 3267 to 3907 655 to 15   AAA   641/641
(100 %)
0 diff
(100 %id)
BG209807   .a 3275 to 3531 1 to 257       257/257
(100 %)
3 diff
(98.9 %id)
BG221226   .a 3275 to 3482 1 to 208       208/210
(99 %)
7 diff
(96.7 %id)
BG197310   .a 3276 to 4071 1 to 795       795/795
(100 %)
4 diff
(99.5 %id)
BG198866   .a 3276 to 4065 1 to 787       787/788
(99 %)
9 diff
(98.9 %id)
BG203502   .a 3277 to 3586 1 to 311       311/312
(99 %)
7 diff
(97.8 %id)
BG208219   .a 3277 to 3582 1 to 307       307/307
(100 %)
17 diff
(94.5 %id)
CN263282 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3277 to 4045 17 to 784       768/784
(97 %)
6 diff
(99.3 %id)
BF666951 brain, primitive neuroectoderm .a 3278 to 3946 1 to 662       662/869
(76 %)
15 diff
(98.3 %id)
BF668544 brain, primitive neuroectoderm .a 3278 to 3802 1 to 524       524/919
(57 %)
7 diff
(99.3 %id)
BQ772138 Chondrosarcoma Grade II, Left Pelvis .a 3284 to 3911 646 to 19   AAA   628/628
(100 %)
0 diff
(100 %id)
TI_154129791   .a 3288 to 4352 56 to 1100     Submitted on the opposite strand 1045/1130
(92 %)
21 diff
(98.2 %id)
BE958106 brain, primitive neuroectoderm .a 3298 to 3914 1 to 606       606/792
(76 %)
24 diff
(97.0 %id)
AI050761 senescent fibroblast .a 3301 to 3910 609 to 3       607/616
(98 %)
0 diff
(100 %id)
BF215604 brain, glioblastoma .a 3309 to 3964 1 to 648       648/871
(74 %)
14 diff
(98.4 %id)
CK823212 Islets of Langerhans, Pancreas .a 3313 to 3907 595 to 1       595/595
(100 %)
3 diff
(99.5 %id)
BC021695 Brain, primitive neuroectodermal .a 3321 to 4458 4 to 1144   available from MGC, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 1141/1141
(100 %)
1 diff
(100.0 %id)
BF382797 brain, primitive neuroectoderm .a 3321 to 3810 1 to 503   available from MGC,   503/750
(67 %)
42 diff
(94.4 %id)
TI_151717350   .a 3323 to 3918 718 to 122       597/1044
(57 %)
5 diff
(99.6 %id)
BG498896 adenocarcinoma, Prostate .a 3335 to 4050 1 to 717       717/719
(99 %)
13 diff
(98.2 %id)
AW665220 pooled .a 3339 to 3910 578 to 7       572/578
(98 %)
0 diff
(100 %id)
BM670881 eye, lens .a 3344 to 3907 582 to 19   fully sequenced, AAA   564/564
(100 %)
1 diff
(99.9 %id)
BF247160 hypernephroma, Kidney .a 3347 to 4009 1 to 660       660/748
(88 %)
30 diff
(96.0 %id)
BM893528 Islets of Langerhans, Pancreas .a 3348 to 3907 560 to 1       560/560
(100 %)
0 diff
(100 %id)
CX164349 human embryonic stem cells differentiated toan early endodermal cell type .a 3357 to 4081 1 to 724       724/724
(100 %)
4 diff
(99.5 %id)
BG779350 adenocarcinoma, Prostate .a 3366 to 4114 1 to 746       746/747
(99 %)
26 diff
(96.6 %id)
BE812771 amnion_normal .a 3386 to 3880 34 to 530       497/530
(93 %)
6 diff
(98.9 %id)
BQ009810 Chondrosarcoma, Left Pubic Bone .a 3390 to 3907 532 to 15   AAA   518/547
(94 %)
0 diff
(100 %id)
AA933061 2 pooled tumors (clear cell type), Kidney .a 3402 to 3910 506 to 1       506/506
(100 %)
7 diff
(98.7 %id)
AI127140 heart .a 3408 to 3809 402 to 1       402/402
(100 %)
0 diff
(100 %id)
AU153641   .a 3409 to 3911 508 to 1       508/508
(100 %)
12 diff
(97.7 %id)
AA863199 2 pooled tumors (clear cell type), Kidney .a 3412 to 3910 499 to 1       499/499
(100 %)
2 diff
(99.6 %id)
AW900970 nervous_normal .a 3430 to 3691 269 to 4       266/273
(97 %)
0 diff
(100 %id)
AW901579 nervous_normal .a 3437 to 3952 1 to 514       514/516
(99 %)
8 diff
(98.5 %id)
AW901581 nervous_normal .a 3437 to 3952 1 to 513       513/515
(99 %)
10 diff
(98.1 %id)
AW900934 nervous_normal .a 3438 to 3595 1 to 157       157/157
(100 %)
6 diff
(96.2 %id)
AW901562 nervous_normal .a 3438 to 3890 451 to 3       449/459
(97 %)
0 diff
(100 %id)
BE701904 nervous_normal .a 3438 to 3827 388 to 1       388/398
(97 %)
8 diff
(98.0 %id)
BF363884 nervous_normal .a 3438 to 3869 437 to 7       431/447
(96 %)
0 diff
(100 %id)
BF363888 nervous_normal .a 3438 to 3933 501 to 10       492/509
(96 %)
0 diff
(100 %id)
BQ337937 nervous_normal .a 3438 to 3803 391 to 26       366/401
(91 %)
0 diff
(100 %id)
AW901558 nervous_normal .a 3448 to 3952 9 to 514       506/516
(98 %)
14 diff
(97.3 %id)
CN263266 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3453 to 3949 1 to 497       497/497
(100 %)
0 diff
(100 %id)
BE701906 nervous_normal .a 3464 to 3952 1 to 484       484/486
(99 %)
12 diff
(97.6 %id)
BU940410 mixed (pool of 40 RNAs) .a 3470 to 4015 1 to 548       548/855
(64 %)
14 diff
(98.4 %id)
N83358   .a 3472 to 3728 1 to 255       255/255
(100 %)
3 diff
(98.9 %id)
BE938964 testis_normal .a 3473 to 3810 339 to 2       338/340
(99 %)
0 diff
(100 %id)
BE938981 testis_normal .a 3473 to 3810 339 to 2       338/340
(99 %)
0 diff
(100 %id)
BY798213 eye .a 3487 to 4054 1 to 567       567/567
(100 %)
4 diff
(99.3 %id)
CN263279 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3493 to 4104 8 to 619       612/619
(98 %)
6 diff
(99.1 %id)
BF691307 melanotic melanoma, high MDR, skin .a 3503 to 4113 1 to 611       611/871
(70 %)
20 diff
(97.8 %id)
CB145698 Liver .a 3508 to 3907 440 to 40   AAA Submitted on the opposite strand 401/401
(100 %)
2 diff
(99.6 %id)
BE701884 nervous_normal .a 3527 to 3952 1 to 427       427/429
(99 %)
20 diff
(95.4 %id)
AW901572 nervous_normal .a 3540 to 3952 1 to 409       409/411
(99 %)
13 diff
(96.9 %id)
W49619 senescent fibroblast .a 3541 to 3911 371 to 1   fully sequenced,   371/371
(100 %)
0 diff
(100 %id)
AW901560 nervous_normal .a 3571 to 3952 41 to 419       379/421
(90 %)
13 diff
(97.0 %id)
W24640 lung .a 3590 to 3979 1 to 394       394/394
(100 %)
4 diff
(99.0 %id)
AA406401 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3603 to 3989 1 to 387       387/387
(100 %)
2 diff
(99.5 %id)
AW360785 colon .a 3631 to 3944 1 to 315       315/315
(100 %)
9 diff
(97.2 %id)
DR762405 embryonic stem .a 3634 to 4456 820 to 1     Submitted on the opposite strand 820/820
(100 %)
2 diff
(99.8 %id)
AW360819 colon .a 3637 to 3944 15 to 323       309/323
(95 %)
6 diff
(98.2 %id)
AW136630   .a 3658 to 3911 267 to 14   AAA   254/254
(100 %)
5 diff
(98.1 %id)
BF885816 testis_normal .a 3663 to 3882 1 to 221       221/221
(100 %)
11 diff
(95.1 %id)
AA757163   .a 3668 to 4071 405 to 3       403/405
(99 %)
0 diff
(100 %id)
AU127328   .a 3692 to 4144 2 to 459   fully sequenced, capped   458/458
(100 %)
7 diff
(98.5 %id)
BX116373 whole brain .a 3698 to 4073 392 to 15   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 378/378
(100 %)
1 diff
(99.8 %id)
AA747483 Ewing's sarcoma .a 3699 to 3970 313 to 42       272/313
(86 %)
0 diff
(100 %id)
BG193800   .a 3746 to 4461 730 to 17   AAA Submitted on the opposite strand 714/714
(100 %)
3 diff
(99.6 %id)
T29223 ovary .a 3748 to 4030 1 to 284       284/284
(100 %)
1 diff
(99.7 %id)
AW951188   .a 3749 to 4437 1 to 682       682/683
(99 %)
25 diff
(96.4 %id)
BP206331 coronary artery .a 3774 to 4359 1 to 585       585/585
(100 %)
2 diff
(99.7 %id)
BP204557 coronary artery .a 3783 to 4364 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BX648579 human endometrium carcinoma cell line .a 3797 to 4666 1 to 870   available from DKFZ, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 870/870
(100 %)
3 diff
(99.7 %id)
AL710745 human skeletal muscle .a 3797 to 4330 8 to 543       536/543
(98 %)
6 diff
(98.9 %id)
BF970590 adrenal cortex carcinoma, cell line, adrenal gland .a 3804 to 4461 1 to 664   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 664/664
(100 %)
37 diff
(94.5 %id)
R38385 whole brain .a 3827 to 4073 265 to 14   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 252/259
(97 %)
3 diff
(98.9 %id)
AI675151 anaplastic oligodendroglioma, brain .a 3918 to 4365 449 to 1       449/449
(100 %)
1 diff
(99.8 %id)
BP204626 coronary artery .a 3926 to 4507 1 to 581       581/581
(100 %)
20 diff
(96.6 %id)
DB358857 whole embryo, mainly body .a 3932 to 4461 534 to 1       534/566
(94 %)
19 diff
(96.7 %id)
AA069613   .a 3932 to 4365 438 to 1       438/439
(99 %)
15 diff
(96.6 %id)
BE464612 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 3958 to 4365 408 to 1       408/408
(100 %)
0 diff
(100 %id)
BM999382 Fibrosarcoma .a 3977 to 4666 705 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 687/687
(100 %)
3 diff
(99.6 %id)
AI754509 bone marrow stroma .a 4003 to 4461 476 to 18   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 459/460
(99 %)
0 diff
(100 %id)
DB525197 testis .a 4020 to 4461 1 to 442     Submitted on the opposite strand 442/442
(100 %)
1 diff
(99.8 %id)
BE208308 Kidney, renal cell adenocarcinoma .a 4020 to 4360 344 to 6       339/351
(96 %)
0 diff
(100 %id)
DB538436 hippocampus .a 4021 to 4461 1 to 441     Submitted on the opposite strand 441/441
(100 %)
5 diff
(98.9 %id)
BE176222 head_neck .a 4034 to 4309 277 to 4     Submitted on the opposite strand 274/285
(96 %)
0 diff
(100 %id)
AW241578 pooled germ cell tumors .a 4037 to 4461 452 to 28   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 425/425
(100 %)
1 diff
(99.8 %id)
C04763 heart .a 4087 to 4386 1 to 300       300/300
(100 %)
0 diff
(100 %id)
BM692023 eye, human retina .a 4104 to 4577 1 to 473       473/473
(100 %)
6 diff
(98.8 %id)
AU149944   .a 4114 to 4534 419 to 1   fully sequenced,   419/419
(100 %)
4 diff
(99.1 %id)
AA410423 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4154 to 4365 212 to 1       212/212
(100 %)
0 diff
(100 %id)
H29053 whole brain .a 4161 to 4469 308 to 1       308/308
(100 %)
7 diff
(97.8 %id)
D54330   .a 4199 to 4461 1 to 262       262/262
(100 %)
5 diff
(98.1 %id)
DB541059 hippocampus .a 4206 to 4672 1 to 465     Submitted on the opposite strand 465/465
(100 %)
2 diff
(99.6 %id)
DB536384 hippocampus .a 4209 to 4666 1 to 458     Submitted on the opposite strand 458/458
(100 %)
36 diff
(92.2 %id)
AW016710   .a 4215 to 4666 469 to 18   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 452/452
(100 %)
6 diff
(98.7 %id)
BF037049 adenocarcinoma, ovary .a 4251 to 4615 1 to 367   AAA   367/437
(83 %)
15 diff
(96.6 %id)
AA653561   .a 4261 to 4365 105 to 1       105/105
(100 %)
0 diff
(100 %id)
BE939055 testis_normal .a 4283 to 4439 160 to 9       152/174
(87 %)
0 diff
(100 %id)
AL138111 brain .a 4318 to 4463 18 to 163       146/163
(89 %)
6 diff
(96.4 %id)
BE771084 prostate_tumor .a 4390 to 4650 257 to 3       255/262
(97 %)
0 diff
(100 %id)
AW296721   .a 4395 to 4672 1 to 275     Submitted on the opposite strand 275/294
(93 %)
8 diff
(97.3 %id)
AI264084 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4408 to 4666 258 to 1       258/258
(100 %)
2 diff
(99.3 %id)
AA661623 normal prostate, Prostate .a 4409 to 4672 275 to 14   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 262/262
(100 %)
2 diff
(99.3 %id)
AI082817 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4409 to 4665 255 to 1       255/255
(100 %)
2 diff
(99.3 %id)
AI161223 brain, glioblastoma (pooled) .a 4409 to 4672 264 to 2       263/264
(99 %)
0 diff
(100 %id)
AI143926   .a 4409 to 4672 267 to 5       263/267
(98 %)
0 diff
(100 %id)
AI360818 brain, glioblastoma (pooled) .a 4409 to 4667 260 to 3       258/260
(99 %)
0 diff
(100 %id)
AI356856 brain, glioblastoma (pooled) .a 4409 to 4672 281 to 20   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 262/262
(100 %)
15 diff
(94.3 %id)
AI361474 brain, glioblastoma (pooled) .a 4409 to 4672 264 to 2       263/264
(99 %)
0 diff
(100 %id)
AI253056 Kidney .a 4409 to 4666 272 to 16   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 257/257
(100 %)
1 diff
(99.7 %id)
BE858839 brain, glioblastoma (pooled) .a 4409 to 4672 277 to 15   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 263/263
(100 %)
4 diff
(98.5 %id)
AA954999 pooled .a 4454 to 4672 221 to 4       218/224
(97 %)
0 diff
(100 %id)
AI267295 brain, frontal lobe (see description) .a 4457 to 4556 21 to 116       96/116
(82 %)
6 diff
(94.9 %id)
AI611780 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 4467 to 4573 107 to 1       107/107
(100 %)
0 diff
(100 %id)
CA337305 posterior rhombomeres 5-8 (4 pooled) .a 4488 to 4666 1 to 178   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 178/178
(100 %)
1 diff
(99.5 %id)
CB105441 Liver .a 4538 to 4675 1 to 138   tiling clone,   138/142
(97 %)
1 diff
(99.3 %id)
BG720203 testis .b 1 to 652 1 to 652       652/663
(98 %)
8 diff
(98.8 %id)
DC403359 testis .b 2 to 566 1 to 565   tiling clone,   565/565
(100 %)
0 diff
(100 %id)
AK302831 testis .b 12 to 2938 1 to 2927   tiling clone,   2927/2927
(100 %)
4 diff
(99.9 %id)
DC402889 testis .b 12 to 574 1 to 563       563/563
(100 %)
0 diff
(100 %id)
DC404210 testis .b 12 to 560 1 to 549       549/549
(100 %)
0 diff
(100 %id)
DC396463 testis .b 26 to 619 1 to 594       594/594
(100 %)
2 diff
(99.7 %id)
DC396819 testis .b 26 to 603 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
BI458990 testis .b 31 to 769 1 to 738       738/739
(99 %)
14 diff
(98.2 %id)
DC403182 testis .b 33 to 567 1 to 535       535/535
(100 %)
1 diff
(99.9 %id)
BP230492 brain .b 72 to 652 1 to 581       581/582
(99 %)
9 diff
(98.5 %id)
DB483676.
matches multiple genes
hippocampus .b 74 to 517 1 to 444     also hits gene foblaw 444/444
(100 %)
6 diff
(98.7 %id)
BG723559 testis .c 1 to 740 7 to 745 L142C R143G Y144T S145V V146* tiling clone,   746/746
(100 %)
15 diff
(98.0 %id)
AI765920 Kidney .d 1 to 728 735 to 7 I3H K12I S13Q N14I I15F ... tiling clone,   729/735
(99 %)
27 diff
(96.4 %id)
BG220385   .d 505 to 726 33 to 258   tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 226/258
(87 %)
6 diff
(97.7 %id)
DB092921 testis .e 1 to 555 2 to 556 L128P I163T tiling clone, capped   555/555
(100 %)
2 diff
(99.7 %id)
DA543322   .f 1 to 565 2 to 566 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
DA249373 brain .g 1 to 609 2 to 610 exact tiling clone, capped   609/609
(100 %)
0 diff
(100 %id)
AK129728 adrenal gland .h-u 1 to 1766 1 to 1764 exact tiling clone, available from FLJ,   1764/1764
(100 %)
4 diff
(99.8 %id)
DA012659 adrenal gland .i 1 to 562 2 to 563   tiling clone, capped   562/562
(100 %)
1 diff
(99.9 %id)
BX955043   .j-u 1 to 429 1 to 429 exact tiling clone,   429/429
(100 %)
0 diff
(100 %id)
AV705261 adrenal gland Gene CDH2, variant not shown         Suspected internal deletion, this clone was ignored    
AL600417   Gene CDH2, variant not shown         Suspected internal deletion, this clone was ignored    
AV694302 hepatocellular carcinoma Gene CDH2, variant not shown         Suspected internal deletion, this clone was ignored    
DB327379 brain Gene CDH2, variant not shown         This clone was ignored    
DA810755 brain Gene CDH2, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI