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Gene CDH12TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
54 supporting clones for gene CDH12 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK314800 testis .a 1 to 2842 2 to 2843 exact tiling clone,   2843/2843
(100 %)
4 diff
(99.9 %id)
DA725139   .a 1 to 563 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DB072396 testis .a 1 to 539 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DA190536 amygdala .a 67 to 648 2 to 584   tiling clone, capped   583/583
(100 %)
2 diff
(99.7 %id)
DB226073 trachea .a 104 to 688 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
L33477 cerebral cortex .b 1 to 4166 1 to 4167 V68M E349D A761T tiling clone,   4167/4167
(100 %)
11 diff
(99.8 %id)
NM_004061.3   .b 3 to 4347 1 to 4345 exact RefSeq,   4345/4345
(100 %)
1 diff
(100.0 %id)
DA210091 brain .b 142 to 662 2 to 522   capped   521/561
(92 %)
1 diff
(99.9 %id)
BX954669   .b 258 to 488 1 to 231       231/231
(100 %)
2 diff
(99.2 %id)
DA192862 amygdala .b 282 to 662 2 to 382   capped   381/556
(68 %)
1 diff
(99.9 %id)
DA317094 hippocampus .b 282 to 662 2 to 382   capped   381/550
(69 %)
1 diff
(99.9 %id)
DA230704 brain .b 285 to 662 2 to 379   capped   378/564
(67 %)
1 diff
(99.9 %id)
BC047608 Brain, Lung, Testis, adult, pooled whole .b 298 to 4345 1 to 4044 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 4044/4045
(99 %)
5 diff
(99.9 %id)
BM920726 pooled brain, lung, testis .b 299 to 904 1 to 606       606/1056
(57 %)
2 diff
(99.9 %id)
DA213937 brain .b 757 to 1262 37 to 542   capped   506/541
(93 %)
7 diff
(98.8 %id)
DA801421 brain .b 794 to 1351 2 to 559   capped   556/558
(99 %)
2 diff
(99.7 %id)
DA796166 brain .b 979 to 1474 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
L34057 brain .b 997 to 3517 1 to 2521 S416G D644H Y733I     2521/2521
(100 %)
7 diff
(99.8 %id)
DA791101 brain .b 1317 to 1622 81 to 388   capped   308/465
(66 %)
5 diff
(99.0 %id)
BG179120 adenocarcinoma, cell line, Prostate .b 1615 to 2255 63 to 691       629/734
(85 %)
22 diff
(97.1 %id)
DA311385 hippocampus .b 2011 to 2566 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA718170   .b 2089 to 2396 244 to 551   capped   308/550
(56 %)
9 diff
(98.4 %id)
AA199829   .b 2297 to 2668 12 to 389       378/389
(97 %)
11 diff
(97.2 %id)
BG214116   .b 2376 to 3034 1 to 658       658/967
(68 %)
43 diff
(95.6 %id)
BG200536   .b 2616 to 2806 44 to 235       192/235
(81 %)
8 diff
(96.6 %id)
BG195273   .b 2973 to 3528 1 to 560       560/823
(68 %)
24 diff
(97.1 %id)
DB323182   .b 2985 to 3516 532 to 1       532/532
(100 %)
2 diff
(99.7 %id)
AA678424   .b 3877 to 4241 363 to 1       363/363
(100 %)
1 diff
(99.8 %id)
AW512900 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .b 3910 to 4241 330 to 1       330/330
(100 %)
1 diff
(99.7 %id)
AA199884   .b 3952 to 4240 289 to 1       289/291
(99 %)
0 diff
(100 %id)
AK295123 brain .c 1 to 3078 1 to 3092 exact tiling clone,   3092/3092
(100 %)
12 diff
(99.7 %id)
DC324719 brain .c 1 to 603 1 to 603       603/603
(100 %)
3 diff
(99.6 %id)
DC323883 brain .c 69 to 646 1 to 578   tiling clone,   578/578
(100 %)
1 diff
(99.9 %id)
DC374515 brain .c 152 to 739 1 to 590       590/590
(100 %)
3 diff
(99.5 %id)
DC376293 brain .c 158 to 677 1 to 521       521/521
(100 %)
2 diff
(99.7 %id)
AK092176   .d 1 to 2163 2 to 2164 Q21* tiling clone, available from FLJ,   2164/2164
(100 %)
5 diff
(99.8 %id)
DA692571   .d 1 to 418 2 to 419   capped   418/418
(100 %)
1 diff
(99.8 %id)
AI740827 pooled .e 1 to 660 660 to 1 P7X D17X tiling clone,   660/660
(100 %)
0 diff
(100 %id)
BG201049   .f 119 to 781 675 to 13 I2F Q3K I4* tiling clone, Submitted on the opposite strand 794/899
(88 %)
27 diff
(97.0 %id)
BG190828   .g 1 to 617 4 to 620 A7V     620/638
(97 %)
13 diff
(98.0 %id)
BG193406   .g 1 to 617 2 to 618 S108G     618/635
(97 %)
11 diff
(98.3 %id)
BG197412   .g 1 to 617 4 to 621 Q3* tiling clone,   618/641
(96 %)
11 diff
(98.3 %id)
BG213056   .g 1 to 618 1 to 618 exact tiling clone,   618/637
(97 %)
2 diff
(99.7 %id)
BG199513   .g 14 to 617 15 to 620       606/636
(95 %)
31 diff
(95.2 %id)
CB960624 Human Placenta, placenta .h-u 1 to 750 28 to 781 exact tiling clone,   754/787
(95 %)
7 diff
(99.2 %id)
DN992021 brain, whole brain .i 1 to 666 8 to 673 exact tiling clone,   666/673
(98 %)
6 diff
(99.2 %id)
DC375375 brain .j 1 to 571 1 to 571   tiling clone,   571/571
(100 %)
5 diff
(99.2 %id)
DC377970 brain .j 3 to 534 1 to 532       532/532
(100 %)
3 diff
(99.5 %id)
DC374022 brain .j 32 to 558 1 to 528       528/528
(100 %)
2 diff
(99.7 %id)
DC322626 brain .j 99 to 657 1 to 560       560/560
(100 %)
2 diff
(99.7 %id)
DB217036 trachea .j 106 to 661 2 to 557 exact tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
DB090043 testis .k 1 to 565 2 to 566 exact tiling clone, capped   565/565
(100 %)
2 diff
(99.7 %id)
AV709255 adrenal gland Gene CDH12, variant not shown         Suspected internal deletion, this clone was ignored    
DA249551 brain Gene CDH12, variant not shown       capped This clone was ignored    
BX096573 pooled Gene CDH12, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j, .k Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI