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Gene CDATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
104 supporting clones for gene CDA back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_57233561   .a 1 to 744 26 to 761   tiling clone,   736/761
(96 %)
11 diff
(98.6 %id)
BI907010 leukocyte .a 10 to 744 1 to 733   tiling clone, available from MGC,   733/733
(100 %)
11 diff
(98.5 %id)
BM006349 ductal carcinoma, cell line, Pancreas .a 128 to 947 1 to 820 R15S tiling clone,   820/820
(100 %)
14 diff
(98.3 %id)
TI_59395008   .a 129 to 947 59 to 877 R15S     819/819
(100 %)
13 diff
(98.5 %id)
BQ686897 ductal carcinoma, cell line, Pancreas .a 131 to 997 1 to 880 R15S tiling clone,   880/942
(93 %)
18 diff
(98.1 %id)
BC048284 Blood, adult leukocytes .b 1 to 1068 1 to 1067 Y51C tiling clone, available from MGC, AAA   1067/1067
(100 %)
4 diff
(99.7 %id)
TI_1540413564   .c 1 to 456 462 to 10   tiling clone,   453/462
(98 %)
31 diff
(93.3 %id)
NM_001785.2   .c 14 to 970 1 to 957 exact RefSeq, AAA   957/957
(100 %)
0 diff
(100 %id)
TI_1540413658   .c 15 to 446 448 to 17   tiling clone,   432/480
(90 %)
7 diff
(98.6 %id)
BM043370 carcinoma, cell line, Prostate .c 22 to 788 1 to 765 exact     765/765
(100 %)
3 diff
(99.7 %id)
BI223896 cervical carcinoma cell line, cervix .c 24 to 816 1 to 792 K27Q A84S Q104A V105S M106H ...     792/795
(99 %)
23 diff
(97.2 %id)
CD675458 eye, lens .c 26 to 696 1 to 671 exact tiling clone,   671/671
(100 %)
0 diff
(100 %id)
BM045500 carcinoma, cell line, Prostate .c 30 to 920 1 to 894 V105S M106*     894/900
(99 %)
16 diff
(98.3 %id)
BM045340 carcinoma, cell line, Prostate .c 30 to 827 1 to 819 A2G Q3T K4N R5M P6D ...     819/826
(99 %)
31 diff
(96.3 %id)
BG899449 cartilage .c 31 to 337 86 to 392       307/324
(94 %)
6 diff
(98.2 %id)
BE789830 large cell carcinoma, lung .c 36 to 787 1 to 745 A2P Q3E K4A R5S P6A ...     745/886
(84 %)
24 diff
(97.3 %id)
BI868844 adenocarcinoma, cell line, Liver .c 47 to 721 1 to 672 K27Q A101G C102L R103Q Q104A ...     672/672
(100 %)
12 diff
(98.3 %id)
TI_57230251   .c 47 to 721 78 to 749 K27Q A101G C102L R103Q Q104A ...     672/672
(100 %)
12 diff
(98.3 %id)
BG253113 adenocarcinoma, cell line, Liver .c 51 to 649 1 to 596 K27Q     596/597
(99 %)
6 diff
(99.0 %id)
L27943 Liver .c 101 to 968 28 to 892 exact     865/892
(96 %)
10 diff
(98.9 %id)
BM763560 myeloma .c 119 to 296 1 to 177       177/177
(100 %)
1 diff
(99.5 %id)
TI_57228779   .c 127 to 928 59 to 865 K27Q     807/807
(100 %)
28 diff
(96.6 %id)
BC054036 Liver, adenocarcinoma .c 128 to 970 1 to 843 K27Q available from MGC, AAA   843/843
(100 %)
4 diff
(99.6 %id)
BI869147 adenocarcinoma, cell line, Liver .c 128 to 928 1 to 806 K27Q     806/806
(100 %)
28 diff
(96.6 %id)
BG748405 eye, normal pigmented retinal epithelium .c 135 to 944 1 to 809 K27Q     809/811
(99 %)
19 diff
(97.7 %id)
CB108020 Liver .c 148 to 514 1 to 366       366/366
(100 %)
6 diff
(98.4 %id)
BG563893 Liver .c 155 to 484 1 to 331       331/331
(100 %)
7 diff
(97.9 %id)
CB109454 Liver .c 157 to 683 1 to 527 D121Y     527/527
(100 %)
4 diff
(99.3 %id)
BE883858 leiomyosarcoma, uterus .c 158 to 908 1 to 737 exact     737/739
(99 %)
24 diff
(96.8 %id)
BU595610 mixed (pool of 40 RNAs) .c 160 to 897 1 to 749 K27Q     749/751
(99 %)
15 diff
(98.1 %id)
CB158552 Liver .c 170 to 700 7 to 537 K27Q     531/537
(98 %)
7 diff
(98.7 %id)
DN998352 bone marrow .c 171 to 824 1 to 651 Q3H K4N R5V P6L A7P ...     651/652
(99 %)
23 diff
(96.5 %id)
BX283147 astrocytoma grade IV, cell line, brain .c 177 to 663 1 to 487 exact     487/487
(100 %)
1 diff
(99.8 %id)
BM557701 astrocytoma grade IV, cell line, brain .c 178 to 967 1 to 789 exact     789/824
(95 %)
2 diff
(99.8 %id)
BQ709030 Spleen .c 186 to 959 1 to 771 K27Q AAA   771/784
(98 %)
10 diff
(98.8 %id)
C18838 placenta .c 187 to 620 15 to 442       428/442
(96 %)
20 diff
(95.5 %id)
AJ000474 blood .c 187 to 640 1 to 454 exact     454/454
(100 %)
1 diff
(99.8 %id)
BF149259 skin .c 187 to 427 1 to 241       241/241
(100 %)
0 diff
(100 %id)
CB108404 Liver .c 187 to 577 1 to 391       391/391
(100 %)
0 diff
(100 %id)
AJ705303 bone marrow .c 188 to 672 1 to 486 M117H T118D K119Q P120A D121G ...     486/486
(100 %)
3 diff
(99.4 %id)
TI_1948214132   .c 192 to 632 136 to 576       441/617
(71 %)
8 diff
(98.8 %id)
EL734832 mixed .c 193 to 632 1 to 440       440/591
(74 %)
3 diff
(99.5 %id)
S52873   .c 196 to 931 1 to 736       736/736
(100 %)
1 diff
(99.9 %id)
AA604547 lung, lung tumor .c 197 to 929 733 to 1       731/733
(99 %)
79 diff
(89.3 %id)
BE784638 large cell carcinoma, lung .c 198 to 963 1 to 757       757/874
(86 %)
18 diff
(98.0 %id)
CV418167 nervous_tumor .c 200 to 685 15 to 497       483/497
(97 %)
11 diff
(97.8 %id)
BF724965 eye, Iris .c 201 to 669 1 to 469       469/469
(100 %)
2 diff
(99.6 %id)
CV337579 marrow .c 203 to 568 1 to 366       366/366
(100 %)
0 diff
(100 %id)
CV418166 nervous_tumor .c 204 to 642 20 to 455       436/455
(95 %)
7 diff
(98.5 %id)
BM717211 eye, lens .c 205 to 502 1 to 298   fully sequenced,   298/298
(100 %)
1 diff
(99.7 %id)
BM705637 eye, lens .c 208 to 547 1 to 340   fully sequenced,   340/340
(100 %)
0 diff
(100 %id)
BQ334439 marrow .c 216 to 704 23 to 510       488/510
(95 %)
8 diff
(98.5 %id)
AA927757 pooled germ cell tumors .c 217 to 967 756 to 1       756/756
(100 %)
42 diff
(94.5 %id)
BF901736 marrow .c 219 to 385 24 to 188       165/188
(87 %)
6 diff
(96.9 %id)
BF902831 marrow .c 219 to 385 14 to 179       166/179
(92 %)
6 diff
(96.7 %id)
CV337537 marrow .c 243 to 651 1 to 409       409/409
(100 %)
6 diff
(98.6 %id)
CV337563 marrow .c 243 to 560 1 to 318       318/318
(100 %)
0 diff
(100 %id)
CV369991 marrow .c 259 to 595 26 to 359       334/359
(93 %)
8 diff
(97.8 %id)
CV369969 marrow .c 260 to 595 41 to 375       335/375
(89 %)
12 diff
(96.8 %id)
CV369973 marrow .c 269 to 595 11 to 336       326/336
(97 %)
6 diff
(98.3 %id)
CN309479 embryonic stem cells, cell lines H1, H7, andH9 .c 279 to 538 1 to 260       260/260
(100 %)
0 diff
(100 %id)
AV649252 corresponding non cancerous liver tissue .c 279 to 973 1 to 694     Submitted on the opposite strand 694/698
(99 %)
7 diff
(99.0 %id)
AV649334 corresponding non cancerous liver tissue .c 279 to 970 1 to 690   AAA Submitted on the opposite strand 690/690
(100 %)
23 diff
(96.7 %id)
BQ334236 marrow .c 295 to 719 1 to 424       424/424
(100 %)
6 diff
(98.6 %id)
BQ334263 marrow .c 302 to 540 247 to 9       239/262
(91 %)
2 diff
(99.3 %id)
BQ334482 marrow .c 302 to 682 12 to 391       380/391
(97 %)
11 diff
(97.2 %id)
TI_154052491   .c 338 to 967 735 to 105   AAA   631/889
(70 %)
7 diff
(99.3 %id)
BQ447414 Knee, Osteoarthritic Cartilage .c 345 to 967 641 to 19   AAA   623/627
(99 %)
3 diff
(99.6 %id)
CA415251 Knee, Osteoarthritic Cartilage .c 345 to 967 642 to 19   AAA   624/624
(100 %)
4 diff
(99.4 %id)
BQ323791 colon_ins .c 395 to 910 538 to 23       516/549
(93 %)
0 diff
(100 %id)
BF899006 marrow .c 405 to 578 177 to 6     Submitted on the opposite strand 172/211
(81 %)
6 diff
(97.2 %id)
BE880831 large cell carcinoma, undifferentiated, lung .c 405 to 971 1 to 565       565/600
(94 %)
7 diff
(98.9 %id)
BF892212 marrow .c 413 to 838 442 to 17     Submitted on the opposite strand 426/442
(96 %)
0 diff
(100 %id)
BU935445 mixed (pool of 40 RNAs) .c 451 to 968 3 to 520   tiling clone,   518/524
(98 %)
2 diff
(99.7 %id)
AI184677   .c 467 to 968 504 to 3       502/514
(97 %)
9 diff
(98.3 %id)
BM669253 eye, lens .c 472 to 966 513 to 19   fully sequenced, AAA   495/495
(100 %)
2 diff
(99.6 %id)
AA922903 pooled germ cell tumors .c 474 to 967 495 to 1       495/501
(98 %)
25 diff
(95.1 %id)
BU734921 eye, lens .c 486 to 957 488 to 17   fully sequenced, AAA   472/472
(100 %)
0 diff
(100 %id)
BG181346   .c 513 to 966 1 to 453   AAA   453/453
(100 %)
6 diff
(98.7 %id)
BG220199   .c 513 to 967 1 to 454   AAA   454/454
(100 %)
3 diff
(99.4 %id)
BG202392   .c 515 to 967 1 to 453   AAA   453/453
(100 %)
2 diff
(99.6 %id)
AI343863 2 pooled tumors (clear cell type), Kidney .c 515 to 973 462 to 3   tiling clone,   460/462
(99 %)
0 diff
(100 %id)
AI690499 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 515 to 967 463 to 13   AAA   451/452
(99 %)
2 diff
(99.6 %id)
BQ334250 marrow .c 518 to 897 24 to 407       384/433
(88 %)
15 diff
(96.6 %id)
AI460124 colon .c 518 to 959 443 to 2       442/523
(84 %)
0 diff
(100 %id)
AA948618 2 pooled tumors (clear cell type), Kidney .c 542 to 963 422 to 1       422/422
(100 %)
9 diff
(97.9 %id)
AW008581 brain, glioblastoma (pooled) .c 551 to 970 420 to 1       420/420
(100 %)
25 diff
(94.1 %id)
AW207137   .c 577 to 967 409 to 18   AAA   392/392
(100 %)
4 diff
(99.0 %id)
T28016 adrenal gland, Bone .c 581 to 960 1 to 381       381/381
(100 %)
1 diff
(99.8 %id)
AW950272   .c 582 to 960 1 to 379   AAA   379/379
(100 %)
0 diff
(100 %id)
BF899954 marrow .c 585 to 832 249 to 3     Submitted on the opposite strand 247/418
(59 %)
0 diff
(100 %id)
BF901818 marrow .c 585 to 837 273 to 23     Submitted on the opposite strand 251/273
(91 %)
7 diff
(97.5 %id)
AV660660 corresponding non cancerous liver tissue .c 616 to 960 1 to 345   AAA Submitted on the opposite strand 345/345
(100 %)
3 diff
(99.2 %id)
BF749412 breast_normal .c 662 to 856 27 to 225       199/225
(88 %)
6 diff
(97.4 %id)
BE005094 breast_normal .c 664 to 859 200 to 6     Submitted on the opposite strand 195/201
(97 %)
0 diff
(100 %id)
AW075716 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .c 688 to 967 278 to 1       278/278
(100 %)
7 diff
(97.5 %id)
DW462674 Liver .d-u 1 to 351 17 to 367   tiling clone,   351/367
(95 %)
6 diff
(98.4 %id)
BF155583 head_neck .d-u 80 to 467 1 to 386   tiling clone,   386/386
(100 %)
3 diff
(99.3 %id)
AY634312   .e 1 to 554 1 to 550 G2E C5R P13Q G14A W15G ... tiling clone,   550/550
(100 %)
10 diff
(98.2 %id)
CD248765 embryonic stem cells, WA01, passage 38 .f 1 to 758 23 to 787 exact tiling clone,   765/984
(77 %)
15 diff
(98.5 %id)
BF892180 marrow .f 145 to 496 1 to 359       359/360
(99 %)
38 diff
(89.5 %id)
BF899952 marrow .f 190 to 648 491 to 31   tiling clone, Submitted on the opposite strand 461/497
(92 %)
6 diff
(98.8 %id)
CV369988 marrow .f 190 to 642 459 to 9   tiling clone, Submitted on the opposite strand 451/483
(93 %)
5 diff
(99.0 %id)
BM762918 myeloma .g 1 to 514 1 to 513 exact tiling clone,   513/513
(100 %)
1 diff
(99.9 %id)
AV647934 corresponding non cancerous liver tissue Gene CDA, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV649418 corresponding non cancerous liver tissue Gene CDA, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI