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Gene CD5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
155 supporting clones for gene CD5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB139414 thymus .a 1 to 528 2 to 530   tiling clone, capped   529/529
(100 %)
2 diff
(99.7 %id)
NM_014207.3   .a 63 to 3217 1 to 3155 exact RefSeq, AAA   3155/3155
(100 %)
0 diff
(100 %id)
DB143341 thymus .a 64 to 598 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
AY541703 tonsil .a 65 to 201 1 to 137       137/137
(100 %)
0 diff
(100 %id)
CT003314 T-Lymphocytes .a 80 to 786 1 to 712       712/712
(100 %)
6 diff
(99.2 %id)
DA989035 synovial membrane tissue from rheumatioidarthritis .a 82 to 648 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB144607 thymus .a 83 to 615 2 to 535   capped   534/535
(99 %)
2 diff
(99.7 %id)
TI_57236707   .a 85 to 841 21 to 775       755/777
(97 %)
12 diff
(98.5 %id)
DB121905 thymus .a 85 to 585 2 to 502   capped   501/501
(100 %)
1 diff
(99.9 %id)
DB132266 thymus .a 85 to 652 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB144641 thymus .a 85 to 624 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DB159747 thymus .a 85 to 679 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
CR977345 T-Lymphocytes .a 86 to 999 1 to 914       914/914
(100 %)
3 diff
(99.7 %id)
DB154839 thymus .a 87 to 667 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA946951 Spleen .a 89 to 662 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BI909143 leukocyte .a 93 to 697 1 to 603       603/603
(100 %)
3 diff
(99.6 %id)
DB137421 thymus .a 93 to 441 2 to 350   capped   349/349
(100 %)
2 diff
(99.5 %id)
AK292698 thymus .a 94 to 2130 1 to 2037 P224L V289E H461R tiling clone,   2037/2037
(100 %)
4 diff
(99.9 %id)
AL557643 T cells (Jurkat cell line), T cells from T cell leukemia .a 94 to 766 1 to 673       673/673
(100 %)
5 diff
(99.3 %id)
DA943592 Spleen .a 94 to 654 11 to 571   capped   561/561
(100 %)
2 diff
(99.7 %id)
DB129465 thymus .a 94 to 585 18 to 509   capped   492/492
(100 %)
0 diff
(100 %id)
DB149012 thymus .a 94 to 661 2 to 570   capped   567/569
(99 %)
1 diff
(99.9 %id)
DB162725 thymus .a 94 to 671 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
X04391   .a 94 to 2414 1 to 2320 H461R A471V tiling clone,   2320/2320
(100 %)
5 diff
(99.8 %id)
DA372948 thalamus .a 95 to 723 2 to 630   capped   629/629
(100 %)
1 diff
(99.9 %id)
DA381919 thalamus .a 95 to 653 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA813022   .a 95 to 926 2 to 820   capped   819/821
(99 %)
20 diff
(97.6 %id)
DA814770   .a 95 to 647 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA936602 Spleen .a 95 to 700 2 to 608   capped   607/607
(100 %)
2 diff
(99.7 %id)
DA991365 synovial membrane tissue from rheumatioidarthritis .a 95 to 632 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DB101704 thymus .a 95 to 651 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB104473 thymus .a 95 to 647 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB106233 thymus .a 95 to 546 2 to 453   capped   452/452
(100 %)
0 diff
(100 %id)
DB111805 thymus .a 95 to 585 2 to 492   capped   491/491
(100 %)
1 diff
(99.8 %id)
DB116708 thymus .a 95 to 630 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
DB118294 thymus .a 95 to 656 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB120549 thymus .a 95 to 657 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB123755 thymus .a 95 to 630 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DB129216 thymus .a 95 to 643 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB129780 thymus .a 95 to 660 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB129954 thymus .a 95 to 665 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB131350 thymus .a 95 to 645 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB139213 thymus .a 95 to 572 2 to 479   capped   478/478
(100 %)
0 diff
(100 %id)
DB139325 thymus .a 95 to 627 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DB140438 thymus .a 95 to 572 2 to 479   capped   478/478
(100 %)
0 diff
(100 %id)
DB147698 thymus .a 95 to 678 2 to 585   capped   584/586
(99 %)
1 diff
(99.9 %id)
DB150387 thymus .a 95 to 637 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DB150672 thymus .a 95 to 637 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DB152634 thymus .a 95 to 691 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DB153314 thymus .a 95 to 615 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
DB153774 thymus .a 95 to 676 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DB156302 thymus .a 95 to 653 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB156402 thymus .a 95 to 673 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB162580 thymus .a 95 to 669 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB162729 thymus .a 95 to 673 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB164167 thymus .a 95 to 668 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DB164872 thymus .a 95 to 684 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DB165691 thymus .a 95 to 669 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB205037 trachea .a 95 to 585 2 to 492   capped   491/491
(100 %)
2 diff
(99.6 %id)
DA814441   .a 96 to 654 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA937083 Spleen .a 96 to 585 2 to 491   capped   490/490
(100 %)
1 diff
(99.8 %id)
DA938114 Spleen .a 96 to 686 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DB102254 thymus .a 96 to 641 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DB104071 thymus .a 96 to 647 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB110615 thymus .a 96 to 685 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DB126328 thymus .a 96 to 666 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB153198 thymus .a 96 to 630 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB155154 thymus .a 96 to 680 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DB164612 thymus .a 96 to 630 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DA816337   .a 98 to 655 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB113827 thymus .a 98 to 673 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB127784 thymus .a 98 to 642 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB136684 thymus .a 98 to 641 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BC027901 Pancreas, Spleen, adult pooled .a 100 to 3217 1 to 3126 H461R A471V tiling clone, available from MGC, AAA   3126/3126
(100 %)
11 diff
(99.7 %id)
BI837077 pooled pancreas and spleen .a 100 to 697 31 to 627       597/627
(95 %)
9 diff
(98.6 %id)
TI_57167927   .a 100 to 795 31 to 725       695/727
(95 %)
7 diff
(99.1 %id)
CR987714 T-Lymphocytes .a 101 to 906 1 to 807       807/808
(99 %)
3 diff
(99.7 %id)
CR986302 T-Lymphocytes .a 101 to 972 1 to 873       873/919
(94 %)
2 diff
(99.8 %id)
DA814957   .a 107 to 665 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
CR991034 T-Lymphocytes .a 107 to 965 1 to 861       861/863
(99 %)
6 diff
(99.4 %id)
DB110257 thymus .a 107 to 679 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB154062 thymus .a 107 to 690 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA842112 placenta .a 108 to 657 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA950646 Spleen .a 108 to 665 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA958914 Spleen .a 108 to 658 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA960772 Spleen .a 108 to 660 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA991448 synovial membrane tissue from rheumatioidarthritis .a 108 to 642 2 to 536   capped   535/536
(99 %)
1 diff
(99.9 %id)
DA815116   .a 110 to 667 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA813055   .a 112 to 970 2 to 858   capped   857/857
(100 %)
15 diff
(98.3 %id)
DB145265 thymus .a 112 to 674 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB152024 thymus .a 112 to 700 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA815780   .a 118 to 637 2 to 521   capped   520/520
(100 %)
0 diff
(100 %id)
DB103430 thymus .a 118 to 686 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB122316 thymus .a 118 to 696 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB151513 thymus .a 118 to 575 2 to 459   capped   458/458
(100 %)
0 diff
(100 %id)
DB221703 trachea .a 118 to 585 2 to 469   capped   468/468
(100 %)
0 diff
(100 %id)
DB130353 thymus .a 125 to 660 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
CR999614 T-Lymphocytes .a 134 to 1001 1 to 869       869/869
(100 %)
2 diff
(99.8 %id)
DA995046 synovial membrane tissue from rheumatioidarthritis .a 149 to 695 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
CR977736 T-Lymphocytes .a 154 to 747 1 to 596       596/597
(99 %)
8 diff
(98.7 %id)
CR991278 T-Lymphocytes .a 156 to 791 1 to 637       637/637
(100 %)
1 diff
(99.9 %id)
DA999907 breast, tumor tissue .a 263 to 807 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
BQ711839 Spleen .a 423 to 1189 1 to 777       777/963
(80 %)
35 diff
(96.4 %id)
BX409869 T cells (Jurkat cell line) .a 671 to 1264 1 to 593       593/637
(93 %)
6 diff
(99.1 %id)
AA309449   .a 756 to 1065 1 to 310       310/310
(100 %)
2 diff
(99.4 %id)
DB125434 thymus .a 1177 to 1754 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DB125442 thymus .a 1177 to 1749 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
BE839059 prostate_normal .a 1331 to 1823 528 to 35       494/533
(92 %)
2 diff
(99.7 %id)
AA310062   .a 1332 to 1721 1 to 393       393/395
(99 %)
7 diff
(98.3 %id)
BM550047 leukocyte .a 1458 to 2346 22 to 935       914/1080
(84 %)
42 diff
(96.2 %id)
TI_154188661   .a 1536 to 2171 123 to 759       637/885
(71 %)
35 diff
(96.1 %id)
CD625271   .a 1646 to 2249 1 to 605       605/605
(100 %)
2 diff
(99.7 %id)
BF529916 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1661 to 2283 1 to 621       621/622
(99 %)
4 diff
(99.4 %id)
AA410549 ovarian tumor, ovary .a 1706 to 2143 1 to 436       436/436
(100 %)
7 diff
(98.4 %id)
AA406027 ovarian tumor, ovary .a 1707 to 1935 1 to 228       228/231
(98 %)
2 diff
(99.2 %id)
AL579633 T cells (Jurkat cell line), T cells from T cell leukemia .a 1720 to 2432 718 to 6       713/718
(99 %)
0 diff
(100 %id)
BF343302 brain, glioblastoma with EGFR amplification .a 1838 to 2653 1 to 801       801/986
(81 %)
32 diff
(96.8 %id)
CD625272   .a 1873 to 2654 782 to 1       782/782
(100 %)
3 diff
(99.7 %id)
CD625274   .a 1930 to 2548 1 to 618       618/618
(100 %)
10 diff
(98.4 %id)
CD625276   .a 1930 to 2658 1 to 731       731/732
(99 %)
8 diff
(99.0 %id)
CD625273   .a 1939 to 2658 719 to 1       719/719
(100 %)
3 diff
(99.6 %id)
CD625275   .a 1943 to 2652 709 to 1   tiling clone,   709/709
(100 %)
1 diff
(99.9 %id)
T28991 blood, white blood cells .a 2021 to 2270 1 to 250       250/251
(99 %)
6 diff
(97.7 %id)
BU729697 eye, Retina Foveal and Macular .a 2036 to 2440 18 to 422     Submitted on the opposite strand 405/422
(95 %)
6 diff
(98.6 %id)
AW950978   .a 2057 to 2483 1 to 427       427/609
(70 %)
2 diff
(99.7 %id)
F26511 pectoral muscle (after mastectomy) .a 2098 to 2463 1 to 366       366/374
(97 %)
1 diff
(99.8 %id)
CD625262   .a 2120 to 2658 1 to 537       537/538
(99 %)
5 diff
(99.1 %id)
CD625268   .a 2120 to 2658 1 to 539       539/540
(99 %)
4 diff
(99.3 %id)
CD625270   .a 2120 to 2658 1 to 537       537/538
(99 %)
5 diff
(99.1 %id)
CD625261   .a 2122 to 2654 533 to 1       533/535
(99 %)
1 diff
(99.9 %id)
CD625263   .a 2122 to 2656 536 to 1       536/538
(99 %)
4 diff
(99.3 %id)
CD625267   .a 2122 to 2656 535 to 1       535/537
(99 %)
2 diff
(99.7 %id)
CD625269   .a 2122 to 2654 533 to 1       533/535
(99 %)
1 diff
(99.9 %id)
CD625266   .a 2123 to 2658 23 to 557       535/558
(95 %)
3 diff
(99.5 %id)
CD625264   .a 2135 to 2658 1 to 525       525/526
(99 %)
3 diff
(99.5 %id)
CD625265   .a 2137 to 2656 520 to 1       520/520
(100 %)
1 diff
(99.9 %id)
BM704160 eye, Retina Foveal and Macular .a 2301 to 2520 220 to 1     Submitted on the opposite strand 220/220
(100 %)
0 diff
(100 %id)
AA354313   .a 2390 to 2680 1 to 293       293/301
(97 %)
7 diff
(97.7 %id)
AW967171   .a 2391 to 3008 1 to 612   tiling clone,   612/616
(99 %)
23 diff
(96.3 %id)
BX107940 heart .a 2553 to 3215 1 to 663   tiling clone, AAA   663/663
(100 %)
0 diff
(100 %id)
W84595 heart .a 2553 to 2889 1 to 341   fully sequenced,   341/341
(100 %)
4 diff
(98.9 %id)
AA024392 heart .a 2558 to 2975 1 to 419   fully sequenced,   419/419
(100 %)
7 diff
(98.4 %id)
AA311437   .a 2602 to 3024 1 to 422       422/422
(100 %)
1 diff
(99.8 %id)
AI797836 B-cell, chronic lymphotic leukemia .a 2682 to 3220 547 to 1       547/547
(100 %)
8 diff
(98.6 %id)
BP398244 pancreatic islet .a 2695 to 3217 1 to 524     Submitted on the opposite strand 524/524
(100 %)
5 diff
(99.1 %id)
AA406028 ovarian tumor, ovary .a 2748 to 3215 466 to 1       466/466
(100 %)
2 diff
(99.6 %id)
AI670004 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 2785 to 3220 436 to 1       436/436
(100 %)
0 diff
(100 %id)
AW293565   .a 2828 to 3217 405 to 16   AAA   390/390
(100 %)
4 diff
(99.0 %id)
AA235742 ovarian tumor, ovary .a 2833 to 3218 388 to 1       388/388
(100 %)
3 diff
(99.3 %id)
W84615 heart .a 2859 to 3215 362 to 1   fully sequenced,   362/362
(100 %)
7 diff
(98.1 %id)
AA309891   .a 2867 to 3215 1 to 349       349/349
(100 %)
0 diff
(100 %id)
AI650591 pooled germ cell tumors .a 2872 to 3220 351 to 3       349/351
(99 %)
0 diff
(100 %id)
BM988321 mixed .a 2943 to 3219 301 to 25       277/301
(92 %)
0 diff
(100 %id)
AA025269 heart .a 2945 to 3215 269 to 1   fully sequenced,   269/269
(100 %)
1 diff
(99.7 %id)
AW594651 pooled germ cell tumors .a 2979 to 3220 244 to 3       242/244
(99 %)
0 diff
(100 %id)
DB132855 thymus .b 1 to 546 2 to 547 exact tiling clone, capped   546/546
(100 %)
0 diff
(100 %id)
DA158996 amygdala .c-u 1 to 574 2 to 575 exact tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
BQ881887 Spleen .d-u 1 to 781 1 to 792 W18G L20* tiling clone,   792/922
(85 %)
19 diff
(98.0 %id)
DB206199 trachea Gene CD5, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI