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Gene CLEC4MTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
81 supporting clones for gene CLEC4M back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_014257.4   .a 1 to 1929 6 to 1934 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1934/1934
(100 %)
0 diff
(100 %id)
BC038851 Brain, adult medulla .a 42 to 1929 1 to 1888 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1888/1888
(100 %)
0 diff
(100 %id)
BX339292 Placenta Cot 25-normalized .a 45 to 968 1 to 919       919/956
(96 %)
44 diff
(95.4 %id)
AL544658 placenta, Placenta Cot 25-normalized .a 107 to 945 1 to 839       839/839
(100 %)
0 diff
(100 %id)
AY042234   .a 114 to 1313 1 to 1200 exact     1200/1200
(100 %)
0 diff
(100 %id)
BC110614 PCR rescued clones .a 310 to 1536 170 to 1396       1227/1397
(87 %)
7 diff
(99.5 %id)
AL570816 placenta, Placenta Cot 25-normalized .a 1013 to 1892 886 to 7       880/890
(98 %)
6 diff
(99.4 %id)
AF245219   .b 1 to 1511 1 to 1510 C368X tiling clone,   1510/1510
(100 %)
0 diff
(100 %id)
BX370071 Placenta Cot 25-normalized .b 850 to 1511 116 to 778       663/778
(85 %)
19 diff
(97.6 %id)
AA002266 liver and spleen .b 1084 to 1494 424 to 1   tiling clone,   424/428
(99 %)
15 diff
(96.5 %id)
NM_001144910.1   .c 1 to 1860 6 to 1865 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1865/1865
(100 %)
0 diff
(100 %id)
AK292278 testis .c 1 to 1364 2 to 1365 exact tiling clone,   1365/1365
(100 %)
2 diff
(99.9 %id)
AF290887   .c 61 to 1860 1 to 1800 exact tiling clone,   1800/1800
(100 %)
0 diff
(100 %id)
NM_001144905.1   .d 1 to 1857 6 to 1862 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1862/1862
(100 %)
0 diff
(100 %id)
AK314704 Liver .d 63 to 1241 1 to 1179 exact tiling clone,   1179/1179
(100 %)
2 diff
(99.9 %id)
DA641265 Liver .d 64 to 334 2 to 272   capped   271/271
(100 %)
0 diff
(100 %id)
NM_001144909.1   .e 1 to 1791 6 to 1796 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1796/1796
(100 %)
0 diff
(100 %id)
AY343913   .e 113 to 1208 1 to 1096 D245N tiling clone,   1096/1096
(100 %)
1 diff
(100.0 %id)
NM_001144904.1   .f 1 to 1776 6 to 1781 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1781/1781
(100 %)
0 diff
(100 %id)
AK304499 uterus .f 63 to 1420 1 to 1358 G35E tiling clone,   1358/1358
(100 %)
4 diff
(99.8 %id)
NM_001144907.1   .g 1 to 1728 6 to 1733 R166E E189Q RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1733/1733
(100 %)
5 diff
(99.8 %id)
AY042238   .g 114 to 1112 1 to 999 R166E E189Q tiling clone,   999/999
(100 %)
5 diff
(99.5 %id)
NM_001144911.1   .h 1 to 1732 6 to 1737 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1737/1737
(100 %)
0 diff
(100 %id)
DC419787 uterus .h 63 to 577 1 to 515   tiling clone,   515/515
(100 %)
2 diff
(99.7 %id)
AB015629 Liver .h 90 to 1732 1 to 1643 exact tiling clone,   1643/1643
(100 %)
0 diff
(100 %id)
CD625419   .i 1 to 214 16 to 230   tiling clone,   215/239
(89 %)
8 diff
(96.7 %id)
BE562903 endometrium, adenocarcinoma cell line, uterus .i 82 to 910 1 to 824   tiling clone,   824/828
(99 %)
17 diff
(98.0 %id)
NR_026707.1   .j 1 to 2377 6 to 2382 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 2382/2382
(100 %)
0 diff
(100 %id)
AY042235   .j 114 to 1761 1 to 1648 exact     1648/1648
(100 %)
0 diff
(100 %id)
R98113 liver and spleen .j 1280 to 1781 1 to 502       502/503
(99 %)
15 diff
(97.1 %id)
CB162093 Liver .j 1284 to 1891 1 to 608       608/608
(100 %)
0 diff
(100 %id)
DT218186 brain .j 1412 to 1928 1 to 518       518/518
(100 %)
3 diff
(99.5 %id)
AA448145   .j 1641 to 2006 1 to 366   fully sequenced,   366/366
(100 %)
1 diff
(99.8 %id)
AA431250.
matches multiple genes
  .j 1713 to 2211 1 to 499     also hits gene SLC23A3andNHEJ1 499/499
(100 %)
0 diff
(100 %id)
H90360 liver and spleen .j 1728 to 2109 1 to 381   fully sequenced,   381/381
(100 %)
10 diff
(97.4 %id)
BQ006101 Chondrosarcoma, Left Pelvis .j 1734 to 2371 656 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 638/638
(100 %)
0 diff
(100 %id)
AA448002   .j 1976 to 2381 406 to 1   fully sequenced,   406/406
(100 %)
3 diff
(99.3 %id)
R96810 liver and spleen .j 2005 to 2378 385 to 4       382/389
(98 %)
0 diff
(100 %id)
H91270 liver and spleen .j 2086 to 2374 289 to 1   fully sequenced,   289/289
(100 %)
1 diff
(99.7 %id)
NR_026708.1   .k 1 to 2264 6 to 2269 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 2269/2269
(100 %)
0 diff
(100 %id)
DB048428 testis .k 1 to 551 6 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
TI_57173161   .k 1 to 797 20 to 815       797/815
(97 %)
15 diff
(98.2 %id)
DB030283 testis .k 1 to 594 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
BI827055 brain, medulla .k 11 to 797 1 to 786       786/786
(100 %)
9 diff
(98.9 %id)
BI828875 brain, medulla .k 42 to 809 1 to 769       769/769
(100 %)
1 diff
(99.9 %id)
TI_57172688   .k 42 to 809 34 to 802       769/802
(95 %)
7 diff
(99.2 %id)
DA010010 adrenal gland .k 59 to 624 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA640734 Liver .k 60 to 541 2 to 483   capped   482/482
(100 %)
1 diff
(99.8 %id)
DA838301 placenta .k 60 to 624 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA638933 Liver .k 90 to 610 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
DA642565 Liver .k 91 to 610 2 to 521   capped   520/520
(100 %)
0 diff
(100 %id)
DA844226 placenta .k 91 to 668 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
TI_1948126138   .k 113 to 897 131 to 911       781/1348
(57 %)
35 diff
(97.5 %id)
TI_1948126284   .k 113 to 896 131 to 920       790/1434
(55 %)
37 diff
(97.5 %id)
TI_1948126443   .k 113 to 896 129 to 914       786/1377
(57 %)
28 diff
(98.0 %id)
AY042236   .k 114 to 1648 1 to 1535 exact     1535/1535
(100 %)
0 diff
(100 %id)
CV030956 mixed .k 114 to 717 1 to 604       604/604
(100 %)
0 diff
(100 %id)
DA639717 Liver .k 155 to 628 2 to 477   capped   476/480
(99 %)
6 diff
(98.8 %id)
DA835259 placenta .l 1 to 557 2 to 558   tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
DA639306 Liver .l 33 to 568 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
BX448853 fetal liver, Liver .l 172 to 774 1 to 603   tiling clone,   603/603
(100 %)
0 diff
(100 %id)
H90968 liver and spleen .l 1144 to 1546 1 to 411   tiling clone,   411/419
(98 %)
15 diff
(96.5 %id)
BX448852 fetal liver, Liver .l 1199 to 1973 774 to 1   tiling clone,   774/774
(100 %)
9 diff
(98.9 %id)
H90312 liver and spleen .l 1685 to 1983 306 to 1   tiling clone,   306/410
(74 %)
7 diff
(98.3 %id)
NM_001144906.1   .m 1 to 1521 6 to 1526 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1526/1526
(100 %)
0 diff
(100 %id)
AY042240   .m 114 to 905 1 to 792 R120Q tiling clone,   792/792
(100 %)
1 diff
(99.9 %id)
NR_026709.1   .n 1 to 2201 6 to 2206 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 2206/2206
(100 %)
0 diff
(100 %id)
CD625420   .n 45 to 243 223 to 25       199/238
(83 %)
0 diff
(100 %id)
AY042239   .n 114 to 1585 1 to 1472 exact     1472/1472
(100 %)
0 diff
(100 %id)
BF091127 testis_normal .n 1489 to 1720 17 to 248       232/254
(91 %)
6 diff
(97.7 %id)
R24914 placenta .n 1622 to 2043 1 to 438       438/438
(100 %)
21 diff
(95.3 %id)
H00237 placenta .n 1623 to 2006 1 to 396   fully sequenced,   396/396
(100 %)
10 diff
(97.5 %id)
H01729 placenta .n 1623 to 1931 1 to 315   fully sequenced,   315/315
(100 %)
10 diff
(96.9 %id)
BX102225 colon .n 1754 to 2158 7 to 411       405/411
(98 %)
6 diff
(98.6 %id)
BQ008265 Chondrosarcoma, Left Pelvis .n 1782 to 2201 438 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 420/420
(100 %)
1 diff
(99.8 %id)
AA779963 liver and spleen .n 1889 to 2201 326 to 14   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 313/313
(100 %)
0 diff
(100 %id)
H00987 placenta .n 1901 to 2201 305 to 1   fully sequenced,   305/305
(100 %)
6 diff
(98.1 %id)
H00185 placenta .n 1976 to 2194 226 to 1   fully sequenced,   226/226
(100 %)
2 diff
(99.2 %id)
AK298084 lung .o 1 to 830 1 to 830 E235G tiling clone,   830/830
(100 %)
2 diff
(99.8 %id)
DC359031 lung .o 1 to 574 1 to 574       574/574
(100 %)
1 diff
(99.9 %id)
NM_001144908.1   .p 1 to 1540 6 to 1545 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1545/1545
(100 %)
0 diff
(100 %id)
AY042237   .p 114 to 924 1 to 811 R164Q tiling clone,   811/811
(100 %)
1 diff
(99.9 %id)
AK023750 placenta .q 1 to 2990 2 to 2991 A43T tiling clone, available from FLJ,   2991/2991
(100 %)
15 diff
(99.5 %id)
AU140165 placenta .q 1 to 792 2 to 792 A43T capped   791/791
(100 %)
10 diff
(98.8 %id)
AU158335 placenta .q 2455 to 2990 534 to 1       534/545
(97 %)
13 diff
(97.7 %id)
DB048046 testis .r 1 to 555 2 to 556 E97R tiling clone, capped   555/555
(100 %)
4 diff
(99.3 %id)
AV645629 corresponding non cancerous liver tissue Gene CLEC4M, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV645755 corresponding non cancerous liver tissue Gene CLEC4M, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
R80140 placenta Gene CLEC4M, variant not shown         Suspected internal deletion, this clone was ignored    
R80141 placenta Gene CLEC4M, variant not shown         Suspected internal deletion, this clone was ignored    
DB376080 placenta Gene CLEC4M, variant not shown         Suspected internal deletion, this clone was ignored    
DA830764 placenta Gene CLEC4M, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI