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Gene CCRL1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
42 supporting clones for gene CCRL1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_178445.1   .a-u 1 to 2402 1 to 2402 exact RefSeq,   2402/2402
(100 %)
0 diff
(100 %id)
BG996991 head_neck .a-u 71 to 472 1 to 402   tiling clone,   402/402
(100 %)
6 diff
(98.6 %id)
DC419249 stomach, tumor tissue .b 1 to 574 1 to 575   tiling clone,   575/575
(100 %)
1 diff
(99.9 %id)
NM_016557.2   .b 14 to 2237 1 to 2224 exact RefSeq,   2224/2224
(100 %)
0 diff
(100 %id)
AK313923   .b 34 to 1149 1 to 1116 exact     1116/1116
(100 %)
1 diff
(100.0 %id)
DA476929   .b 35 to 586 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB251286 uterus .b 35 to 575 2 to 543   capped   542/544
(99 %)
3 diff
(99.5 %id)
BP290838 lung .b 39 to 425 1 to 386       386/561
(68 %)
15 diff
(97.4 %id)
DA565124 heart .b 41 to 422 187 to 568   capped   382/567
(67 %)
6 diff
(99.0 %id)
DA381352 thalamus .b 44 to 662 2 to 621   capped   620/620
(100 %)
3 diff
(99.6 %id)
BP341533 stomach mucosa .b 53 to 633 1 to 581       581/581
(100 %)
0 diff
(100 %id)
AF110640   .b 57 to 1880 1 to 1824 exact tiling clone, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 1824/1824
(100 %)
1 diff
(100.0 %id)
BC069438 PCR rescued clones .b 57 to 1199 1 to 1143 exact available from MGC,   1143/1143
(100 %)
0 diff
(100 %id)
DA891016 rectum .b 60 to 636 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
BG205105   .b 84 to 615 1 to 534       534/782
(68 %)
37 diff
(95.3 %id)
CV574985 cornea, eye .b 86 to 699 1 to 614       614/614
(100 %)
2 diff
(99.7 %id)
AK225927 stomach mucosa .b 87 to 1621 1 to 1535 I350T     1535/1535
(100 %)
2 diff
(99.9 %id)
AL561603 B cells from Burkitt lymphoma .b 87 to 1163 1 to 1064 E14X E15X N16X E17X S25X ...     1064/1103
(96 %)
46 diff
(95.9 %id)
CD246173 mixed .b 89 to 591 1 to 509       509/880
(57 %)
14 diff
(98.5 %id)
CO960229.
matches multiple genes
mixed .b 94 to 830 1 to 733     also hits gene CCRL1P1 733/734
(99 %)
10 diff
(98.7 %id)
TI_1948229328   .b 96 to 1033 131 to 1056       926/1482
(62 %)
6 diff
(99.6 %id)
TI_1948229329   .b 96 to 1050 136 to 1098       963/1334
(72 %)
6 diff
(99.6 %id)
EL736284 mixed .b 97 to 758 1 to 662       662/662
(100 %)
2 diff
(99.7 %id)
BC095501 G-protein coupled receptors obtained byPCR-directed strategy .b 100 to 1145 1 to 1046       1046/1047
(99 %)
5 diff
(99.6 %id)
H67224 nose, olfactory epithelium .b 338 to 664 1 to 327       327/328
(99 %)
2 diff
(99.4 %id)
AA215577 germinal center B cell .b 753 to 964 1 to 214       214/217
(98 %)
4 diff
(98.2 %id)
DQ786229   .b 796 to 1236 476 to 35     Submitted on the opposite strand 442/485
(91 %)
0 diff
(100 %id)
BX391036   .b 797 to 1731 1 to 920       920/920
(100 %)
38 diff
(95.9 %id)
AI131555 heart .b 829 to 1227 414 to 16   AAA   399/399
(100 %)
8 diff
(98.0 %id)
TI_57147463   .b 863 to 1634 33 to 805       773/808
(95 %)
14 diff
(98.3 %id)
BI759971 pooled colon, kidney, stomach .b 865 to 1634 1 to 771       771/774
(99 %)
14 diff
(98.2 %id)
BX281237 pooled colon, kidney, stomach .b 866 to 1363 1 to 498       498/498
(100 %)
0 diff
(100 %id)
BE970160 Pancreas .b 942 to 1598 1 to 652       652/711
(91 %)
14 diff
(98.1 %id)
AI769466 2 pooled tumors (clear cell type), Kidney .b 961 to 1227 296 to 30   AAA   267/267
(100 %)
0 diff
(100 %id)
BX102023   .b 1365 to 1880 1 to 517   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 517/517
(100 %)
1 diff
(99.9 %id)
AA401504.
matches multiple genes
  .b 1365 to 1818 1 to 455     also hits gene warvyby 455/455
(100 %)
1 diff
(99.8 %id)
AI382794 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1671 to 1909 239 to 1       239/239
(100 %)
1 diff
(99.6 %id)
AI979038 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 1689 to 2221 533 to 1   tiling clone,   533/533
(100 %)
2 diff
(99.7 %id)
BQ015927 lung, Metastatic Chondrosarcoma .b 1706 to 2338 650 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 632/632
(100 %)
2 diff
(99.7 %id)
BE813859 breast_normal .b 1748 to 2155 407 to 5       403/407
(99 %)
0 diff
(100 %id)
AI816878 2 pooled tumors (clear cell type), Kidney .b 1787 to 2237 454 to 4       451/458
(98 %)
0 diff
(100 %id)
CO960208.
matches multiple genes
mixed P1.a-u 89 to 821 753 to 29   tiling clone, also hits gene CCRL1P1 725/795
(91 %)
0 diff
(100 %id)
AK304461 stomach, tumor tissue Gene CCRL1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI