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Gene CCL21TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
165 supporting clones for gene CCL21 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP331359 rectum .a 1 to 578 1 to 579 R67P tiling clone,   579/583
(99 %)
5 diff
(99.2 %id)
TI_57165868   .a 8 to 743 24 to 758 C32A L33S K34S Y35T S36A ... tiling clone,   735/758
(96 %)
7 diff
(99.1 %id)
BI833188 pooled pancreas and spleen .a 18 to 743 1 to 725 C32A L33S K34S Y35T S36A ...     725/725
(100 %)
1 diff
(99.9 %id)
NM_002989.2   .a 18 to 895 1 to 878 exact RefSeq,   878/878
(100 %)
0 diff
(100 %id)
CD704958 normal nasopharynx .a 26 to 537 28 to 539 exact     512/539
(94 %)
6 diff
(98.9 %id)
BI837794 pooled pancreas and spleen .a 29 to 818 1 to 791 G102A C103A R104G K105R D106T ...     791/791
(100 %)
9 diff
(98.9 %id)
AK311901 Spleen .a 32 to 506 1 to 475 exact     475/475
(100 %)
0 diff
(100 %id)
BP271492 small intestine .a 32 to 615 1 to 584 exact     584/584
(100 %)
0 diff
(100 %id)
AU310825 neuroblastoma .a 32 to 503 1 to 472   fully sequenced,   472/472
(100 %)
0 diff
(100 %id)
BP316708 pericardium .a 32 to 614 1 to 583 exact     583/583
(100 %)
2 diff
(99.7 %id)
BP316886 pericardium .a 32 to 614 1 to 583 exact     583/583
(100 %)
0 diff
(100 %id)
BP317266 pericardium .a 32 to 614 1 to 583 P96X K114Q K132X     583/583
(100 %)
6 diff
(99.0 %id)
BP318170 pericardium .a 32 to 611 1 to 582 R124K T125D E126*     580/582
(99 %)
1 diff
(99.9 %id)
BP319661 pericardium .a 32 to 613 1 to 582 Q29H V45D I62M T112H G113W ...     582/582
(100 %)
5 diff
(99.2 %id)
BM819973 stomach .a 32 to 565 1 to 535 S119L K120Q G121R C122L K123Q ...     535/535
(100 %)
2 diff
(99.7 %id)
DA930659 small intestine .a 33 to 605 2 to 574 exact capped   573/573
(100 %)
1 diff
(99.9 %id)
DA958949 Spleen .a 33 to 584 2 to 553 exact capped   552/552
(100 %)
0 diff
(100 %id)
TI_57165358   .a 34 to 818 38 to 823 G102A C103A R104G K105R D106T ...     786/823
(95 %)
11 diff
(98.7 %id)
TI_57163069   .a 37 to 892 54 to 908 G102A C103A R104G K105R D106T ... AAA   855/908
(94 %)
17 diff
(98.2 %id)
TI_57164312   .a 37 to 834 23 to 819 F16L G17A I18S R20G T21P ...     797/821
(97 %)
21 diff
(97.5 %id)
TI_57164497   .a 37 to 893 62 to 918 exact     857/955
(89 %)
27 diff
(97.2 %id)
BI837407 pooled pancreas and spleen .a 38 to 798 9 to 772 exact     764/772
(98 %)
21 diff
(97.3 %id)
TI_57183545   .a 38 to 895 22 to 886 F16L G17A I18S R20G T21P ...     865/887
(97 %)
23 diff
(97.5 %id)
TI_57165285   .a 38 to 798 39 to 802 exact     764/802
(95 %)
21 diff
(97.4 %id)
TI_57168004   .a 38 to 888 23 to 875 G102A C103A R104G K105R D106T ...     853/876
(97 %)
15 diff
(98.3 %id)
BI834567 pooled pancreas and spleen .a 40 to 893 1 to 852 G102A C103A R104G K105R D106T ...     852/852
(100 %)
9 diff
(99.0 %id)
BI834735 pooled pancreas and spleen .a 40 to 830 1 to 793 S24Q D25*     793/793
(100 %)
9 diff
(98.9 %id)
TI_57167748   .a 40 to 893 48 to 899 G102A C103A R104G K105R D106T ...     852/899
(94 %)
15 diff
(98.4 %id)
TI_57168165   .a 40 to 830 38 to 830 S24Q D25*     793/830
(95 %)
14 diff
(98.4 %id)
BI838483 pooled pancreas and spleen .a 43 to 834 1 to 790 S24Q D25*     790/795
(99 %)
8 diff
(99.0 %id)
BI838118 pooled pancreas and spleen .a 43 to 644 1 to 601 G102A C103A R104G K105R D106T ...     601/601
(100 %)
1 diff
(99.9 %id)
TI_57163122   .a 43 to 834 65 to 854 S24Q D25*     790/859
(91 %)
14 diff
(98.4 %id)
TI_57163252   .a 43 to 644 33 to 633 G102A C103A R104G K105R D106T ...     601/633
(94 %)
7 diff
(98.9 %id)
AB002409   .a 44 to 893 1 to 850 exact     850/852
(99 %)
2 diff
(99.8 %id)
BI838430 pooled pancreas and spleen .a 44 to 892 1 to 848 G102A C103A R104G K105R D106T ... AAA   848/848
(100 %)
11 diff
(98.8 %id)
BI833988 pooled pancreas and spleen .a 44 to 834 1 to 790 F16L G17A I18S R20G T21P ...     790/792
(99 %)
16 diff
(98.0 %id)
BI834167 pooled pancreas and spleen .a 44 to 893 1 to 850 exact     850/887
(95 %)
21 diff
(97.7 %id)
BI837629 pooled pancreas and spleen .a 45 to 800 1 to 763 F16L G17A I18S R20G T21P ...     763/764
(99 %)
13 diff
(98.3 %id)
BI770636 pooled lung and spleen .a 46 to 895 1 to 857 F16L G17A I18S R20G T21P ...     857/858
(99 %)
18 diff
(98.0 %id)
BI834862 pooled pancreas and spleen .a 46 to 888 1 to 845 G102A C103A R104G K105R D106T ...     845/846
(99 %)
9 diff
(99.0 %id)
TI_57165590   .a 46 to 800 38 to 799 F16L G17A I18S R20G T21P ...     762/800
(95 %)
17 diff
(97.9 %id)
AA297977 lung .a 47 to 426 1 to 384       384/385
(99 %)
9 diff
(97.7 %id)
BQ712706 Spleen .a 47 to 893 12 to 858 exact tiling clone, AAA   847/858
(98 %)
8 diff
(99.1 %id)
AA298031 lung .a 49 to 343 1 to 295       295/296
(99 %)
1 diff
(99.7 %id)
CA407606 adipose .a 52 to 555 1 to 508 Q71X A100X K115E G116R S119L ...     508/508
(100 %)
9 diff
(98.3 %id)
CR615435 Placenta Cot 25-normalized .a 52 to 890 1 to 839 exact     839/839
(100 %)
0 diff
(100 %id)
AL553510 placenta, Placenta Cot 25-normalized .a 52 to 890 1 to 841 Q3X fully sequenced,   841/841
(100 %)
6 diff
(99.3 %id)
BP383923 pancreatic islet .a 54 to 550 497 to 1 exact     497/502
(99 %)
1 diff
(99.9 %id)
BP417209 small intestine .a 54 to 408 1 to 355     Submitted on the opposite strand 355/363
(97 %)
2 diff
(99.5 %id)
TI_57179937   .a 76 to 821 23 to 766 S4V L5T A6G L7S S8E ...     744/766
(97 %)
9 diff
(98.9 %id)
TI_57165179   .a 76 to 869 24 to 815 exact     792/815
(97 %)
8 diff
(99.1 %id)
BI770433 pooled lung and spleen .a 84 to 821 1 to 736 S4V L5T A6G L7S S8E ...     736/736
(100 %)
4 diff
(99.5 %id)
BI838571 pooled pancreas and spleen .a 84 to 869 1 to 784 exact     784/784
(100 %)
3 diff
(99.7 %id)
BI838628 pooled pancreas and spleen .a 84 to 849 1 to 772 R20S T21D Q22P G23R S24Q ...     772/916
(84 %)
26 diff
(97.2 %id)
TI_57165129   .a 84 to 849 40 to 811 R20S T21D Q22P G23R S24Q ... AAA   772/940
(82 %)
31 diff
(96.8 %id)
CD102262 Pooled-Skin .a 93 to 737 1 to 647 exact     647/738
(87 %)
9 diff
(98.8 %id)
BC027918 Pancreas, Spleen, adult pooled .a 95 to 893 1 to 799 exact tiling clone, available from MGC, AAA   799/799
(100 %)
0 diff
(100 %id)
BI838964 pooled pancreas and spleen .a 95 to 841 25 to 770 L12W V13F L14W A15P F16L ...     746/770
(96 %)
9 diff
(98.9 %id)
TI_57166265   .a 95 to 841 25 to 770 L12W V13F L14W A15P F16L ...     746/770
(96 %)
9 diff
(98.9 %id)
AY358887   .a 97 to 889 1 to 793 exact     793/798
(99 %)
1 diff
(99.9 %id)
AA149456 uterus .a 97 to 467 1 to 372   fully sequenced,   372/372
(100 %)
7 diff
(98.2 %id)
U88320   .a 97 to 893 10 to 808 exact AAA   799/808
(98 %)
8 diff
(99.1 %id)
AA302819 lymph node .a 98 to 380 1 to 284       284/284
(100 %)
1 diff
(99.7 %id)
BM704701 eye, RPE and Choroid .a 99 to 804 1 to 706 exact     706/706
(100 %)
0 diff
(100 %id)
TI_1948098005   .a 101 to 510 147 to 555 K111*     409/768
(53 %)
13 diff
(98.4 %id)
TI_1948098334   .a 101 to 510 533 to 125 exact     409/583
(70 %)
0 diff
(100 %id)
AF001979   .a 102 to 895 1 to 794 exact     794/800
(99 %)
3 diff
(99.7 %id)
CR450326   .a 102 to 503 1 to 402       402/402
(100 %)
0 diff
(100 %id)
CV029581 mixed .a 102 to 510 1 to 408 exact     408/573
(71 %)
3 diff
(99.5 %id)
TI_1948098172   .a 103 to 510 125 to 531       407/781
(52 %)
9 diff
(98.9 %id)
W17274 lung .a 108 to 607 1 to 485       485/535
(90 %)
18 diff
(96.7 %id)
TI_57165336   .a 115 to 865 29 to 785       757/916
(82 %)
20 diff
(97.9 %id)
BI837774 pooled pancreas and spleen .a 116 to 865 1 to 756       756/887
(85 %)
14 diff
(98.5 %id)
TI_1948097849   .a 116 to 510 522 to 129       394/1252
(31 %)
7 diff
(99.5 %id)
AW190717 adenocarcinoma, Pancreas .a 157 to 889 734 to 5       730/734
(99 %)
21 diff
(97.2 %id)
TI_151713297   .a 166 to 873 789 to 118       613/960
(63 %)
17 diff
(98.3 %id)
AI076827 liver and spleen .a 181 to 889 710 to 1       710/710
(100 %)
4 diff
(99.5 %id)
W67885 heart .a 182 to 652 1 to 482       482/482
(100 %)
17 diff
(96.5 %id)
BP420682 small intestine .a 185 to 711 1 to 532     Submitted on the opposite strand 532/532
(100 %)
8 diff
(98.5 %id)
AI719610 aorta .a 186 to 668 481 to 1       481/481
(100 %)
9 diff
(98.2 %id)
AI628636 Kidney .a 195 to 895 701 to 3       699/701
(99 %)
7 diff
(99.1 %id)
TI_149291010   .a 200 to 893 788 to 98   AAA   691/692
(99 %)
3 diff
(99.6 %id)
TI_149288662   .a 203 to 893 772 to 85   AAA   688/689
(99 %)
3 diff
(99.6 %id)
AI678017 adenocarcinoma, Pancreas .a 210 to 895 686 to 2       685/686
(99 %)
9 diff
(98.7 %id)
BE830437 lung_tumor .a 211 to 575 383 to 19       365/383
(95 %)
0 diff
(100 %id)
BE645285 pooled .a 216 to 895 683 to 3       681/683
(99 %)
12 diff
(98.3 %id)
BM970488 lung .a 224 to 893 686 to 19   AAA   668/668
(100 %)
2 diff
(99.8 %id)
BM973764 lung .a 244 to 893 667 to 19   AAA   649/649
(100 %)
1 diff
(99.9 %id)
AA911090 pooled germ cell tumors .a 246 to 894 648 to 1       648/648
(100 %)
8 diff
(98.8 %id)
AI709225 aorta .a 258 to 501 244 to 1       244/244
(100 %)
5 diff
(98.0 %id)
BF848043 lung_normal .a 259 to 591 12 to 343       332/343
(96 %)
10 diff
(97.1 %id)
AL553486 placenta, Placenta Cot 25-normalized .a 259 to 862 614 to 11   fully sequenced,   604/614
(98 %)
1 diff
(99.9 %id)
AW665406 pooled .a 264 to 492 238 to 10       229/238
(96 %)
7 diff
(97.1 %id)
AI735472 aorta .a 276 to 895 617 to 1       617/617
(100 %)
13 diff
(97.9 %id)
AW474011 lymph node, lymphoma, follicular mixed small and largecell .a 289 to 895 614 to 8       607/628
(96 %)
24 diff
(96.2 %id)
AI344347 colon, colon tumor, RER+ .a 292 to 892 604 to 1       604/789
(76 %)
34 diff
(95.7 %id)
AW167749 cervix .a 298 to 888 591 to 1       591/595
(99 %)
1 diff
(99.9 %id)
AA873248 Kidney .a 306 to 895 589 to 1       589/589
(100 %)
16 diff
(97.3 %id)
AI718192 aorta .a 345 to 893 549 to 1       549/549
(100 %)
0 diff
(100 %id)
AI223954 lymph node, lymphoma, follicular mixed small and largecell .a 351 to 889 537 to 1       537/537
(100 %)
4 diff
(99.3 %id)
AA845835 Spleen .a 378 to 895 520 to 3       518/520
(99 %)
8 diff
(98.5 %id)
AI092867 heart .a 378 to 894 518 to 1       518/518
(100 %)
19 diff
(96.4 %id)
BP393336 pancreatic islet .a 394 to 893 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
BP392731 pancreatic islet .a 395 to 893 1 to 499     Submitted on the opposite strand 499/499
(100 %)
0 diff
(100 %id)
AI225150 lymph node, lymphoma, follicular mixed small and largecell .a 405 to 895 495 to 7       489/495
(98 %)
4 diff
(99.2 %id)
AI278024 placenta .a 408 to 895 489 to 2       488/489
(99 %)
0 diff
(100 %id)
AI139297 uterus .a 414 to 895 483 to 2       482/483
(99 %)
0 diff
(100 %id)
BP383952 pancreatic islet .a 416 to 895 1 to 480     Submitted on the opposite strand 480/484
(99 %)
1 diff
(99.8 %id)
BP389557 pancreatic islet .a 416 to 889 1 to 474     Submitted on the opposite strand 474/474
(100 %)
0 diff
(100 %id)
BP393931 pancreatic islet .a 416 to 893 1 to 478     Submitted on the opposite strand 478/478
(100 %)
0 diff
(100 %id)
AI922341 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 427 to 895 469 to 1       469/470
(99 %)
4 diff
(99.2 %id)
AI143228 heart .a 435 to 893 459 to 1       459/459
(100 %)
0 diff
(100 %id)
AA151607 uterus .a 437 to 893 457 to 1   fully sequenced,   457/457
(100 %)
5 diff
(99.0 %id)
AI074571 liver and spleen .a 438 to 895 460 to 3       458/460
(99 %)
0 diff
(100 %id)
AU310826 neuroblastoma .a 442 to 895 454 to 1   fully sequenced,   454/454
(100 %)
0 diff
(100 %id)
W84422 heart .a 446 to 895 450 to 3       448/455
(98 %)
0 diff
(100 %id)
AA234004 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 447 to 641 1 to 193       193/193
(100 %)
4 diff
(98.0 %id)
W84375 heart .a 449 to 849 1 to 400       400/400
(100 %)
7 diff
(98.3 %id)
AJ711376 heart .a 455 to 895 1 to 441       441/447
(98 %)
2 diff
(99.6 %id)
BP387299 pancreatic islet .a 465 to 895 1 to 431     Submitted on the opposite strand 431/433
(99 %)
2 diff
(99.6 %id)
AA723875 pooled .a 471 to 893 419 to 1       419/467
(89 %)
12 diff
(97.5 %id)
AI718256 aorta .a 473 to 893 421 to 1       421/421
(100 %)
0 diff
(100 %id)
FN085642 breast carcinoma .a 486 to 587 1 to 101       101/101
(100 %)
1 diff
(99.1 %id)
AI707973 aorta .a 492 to 893 402 to 1       402/402
(100 %)
0 diff
(100 %id)
CB164244 Liver .a 496 to 893 414 to 17   AAA Submitted on the opposite strand 398/398
(100 %)
0 diff
(100 %id)
AA576033 breast, breast tumor .a 498 to 893 423 to 30   AAA   394/399
(98 %)
1 diff
(99.8 %id)
AI719847 aorta .a 500 to 895 397 to 2       396/397
(99 %)
0 diff
(100 %id)
AI571892 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 503 to 890 388 to 1       388/388
(100 %)
0 diff
(100 %id)
AA960870 pooled .a 536 to 895 361 to 3       359/361
(99 %)
0 diff
(100 %id)
AA385281 thyroid gland .a 540 to 857 1 to 318       318/318
(100 %)
2 diff
(99.4 %id)
BQ016848 lung, Lung Focal Fibrosis .a 540 to 893 372 to 19   AAA   354/363
(97 %)
0 diff
(100 %id)
AW959055   .a 541 to 889 1 to 350   AAA   350/350
(100 %)
1 diff
(99.8 %id)
AI253634 Prostate .a 546 to 893 348 to 1       348/348
(100 %)
0 diff
(100 %id)
AI707832 aorta .a 548 to 891 344 to 1       344/344
(100 %)
0 diff
(100 %id)
AI718935 aorta .a 557 to 893 337 to 1       337/337
(100 %)
7 diff
(98.0 %id)
BE044543 pooled .a 559 to 895 338 to 2       337/338
(99 %)
0 diff
(100 %id)
AI497850 pooled .a 560 to 895 340 to 3       338/340
(99 %)
0 diff
(100 %id)
AI224371 lymph node, lymphoma, follicular mixed small and largecell .a 572 to 893 334 to 13   AAA   322/322
(100 %)
0 diff
(100 %id)
AI581527 colon .a 574 to 893 323 to 1       323/323
(100 %)
4 diff
(98.8 %id)
AW628651 pooled .a 575 to 893 321 to 1       321/321
(100 %)
2 diff
(99.4 %id)
AW592219 pooled .a 584 to 893 314 to 1       314/314
(100 %)
7 diff
(97.8 %id)
BE696642 colon .a 591 to 757 168 to 3       166/170
(97 %)
0 diff
(100 %id)
AA331228   .a 595 to 886 1 to 292       292/292
(100 %)
0 diff
(100 %id)
AA331270   .a 595 to 893 1 to 300       300/300
(100 %)
1 diff
(99.7 %id)
AW512585 lymph node, lymphoma, follicular mixed small and largecell .a 596 to 893 309 to 12   AAA   298/300
(99 %)
11 diff
(96.4 %id)
BQ326444 colon_normal .a 612 to 887 284 to 2       283/285
(99 %)
0 diff
(100 %id)
BP385930 pancreatic islet .a 615 to 880 1 to 266     Submitted on the opposite strand 266/266
(100 %)
0 diff
(100 %id)
AW014218   .a 629 to 895 282 to 16       267/282
(94 %)
0 diff
(100 %id)
AA360212 lymph node .a 635 to 893 259 to 1       259/259
(100 %)
0 diff
(100 %id)
AW628811 pooled .a 645 to 887 243 to 1       243/243
(100 %)
1 diff
(99.6 %id)
AA360283 lymph node .a 654 to 893 1 to 240       240/240
(100 %)
0 diff
(100 %id)
AI185579 lung .a 686 to 894 209 to 1       209/209
(100 %)
0 diff
(100 %id)
AW518432 lymph node, lymphoma, follicular mixed small and largecell .a 686 to 893 228 to 21   AAA   208/208
(100 %)
6 diff
(97.2 %id)
AI766466 colon, colon tumor, RER+ .a 688 to 894 207 to 1       207/207
(100 %)
1 diff
(99.6 %id)
AW337457 lymph node, lymphoma, follicular mixed small and largecell .a 693 to 895 209 to 7       203/209
(97 %)
0 diff
(100 %id)
CF530057 placenta .a 693 to 893 219 to 19   AAA   201/201
(100 %)
0 diff
(100 %id)
BE501196 pooled germ cell tumors .a 694 to 893 200 to 1       200/200
(100 %)
0 diff
(100 %id)
F34958 pectoral muscle (after mastectomy) .a 695 to 893 1 to 199       199/273
(72 %)
1 diff
(99.7 %id)
W67812 heart .a 699 to 886 196 to 9       188/196
(95 %)
0 diff
(100 %id)
AA897078 Spleen .a 722 to 893 178 to 7       172/178
(96 %)
0 diff
(100 %id)
AI719947 aorta .a 726 to 893 168 to 1       168/168
(100 %)
0 diff
(100 %id)
T25128   .a 732 to 894 164 to 3       162/164
(98 %)
0 diff
(100 %id)
BG272930 normal head/neck tissue .a 745 to 895 152 to 3       150/179
(83 %)
0 diff
(100 %id)
AI253757 Prostate .a 758 to 893 136 to 1       136/136
(100 %)
0 diff
(100 %id)
AA234005 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 765 to 893 144 to 16   AAA   129/129
(100 %)
0 diff
(100 %id)
AA027314 heart .b 1 to 187 1 to 187   tiling clone,   187/187
(100 %)
2 diff
(99.0 %id)
AW959337   .b 3 to 601 1 to 599 exact tiling clone,   599/599
(100 %)
13 diff
(97.9 %id)
AA027315 heart .b 703 to 870 168 to 1   tiling clone,   168/170
(98 %)
0 diff
(100 %id)
AA947867 pooled Gene CCL21, variant not shown       AAA This clone was ignored    
TI_149290368   Gene CCL21, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BU681820 lung Gene CCL21, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI