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Gene CCL19TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
94 supporting clones for gene CCL19 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AX772806   .a 1 to 586 2 to 587 exact tiling clone, AAA   587/587
(100 %)
2 diff
(99.7 %id)
CD686752 normal nasopharynx .b 1 to 525 23 to 547 S97T tiling clone,   525/547
(95 %)
7 diff
(98.8 %id)
CD693621 normal nasopharynx .b 22 to 639 22 to 640 K52R     619/640
(96 %)
8 diff
(98.8 %id)
CD686299 normal nasopharynx .b 46 to 535 30 to 519 exact     490/519
(94 %)
5 diff
(99.1 %id)
CD686355 normal nasopharynx .b 46 to 627 24 to 605 exact     582/605
(96 %)
5 diff
(99.2 %id)
CD689032 normal nasopharynx .b 46 to 653 15 to 622 exact     608/622
(97 %)
5 diff
(99.2 %id)
CD689622 normal nasopharynx .b 46 to 609 31 to 594 exact     564/594
(94 %)
5 diff
(99.2 %id)
CD696503 normal nasopharynx .b 46 to 637 29 to 620 exact     592/620
(95 %)
5 diff
(99.2 %id)
CD698265 normal nasopharynx .b 46 to 594 34 to 593 L7P D28R C29L C30L L31T ...     560/593
(94 %)
21 diff
(96.5 %id)
CD702223 normal nasopharynx .b 46 to 528 17 to 501 F62Y R85E L86T Q87A R88E ...     485/501
(96 %)
9 diff
(98.3 %id)
CD704468 normal nasopharynx .b 46 to 513 24 to 492 V33A V79A E80R R81T I82H ...     469/492
(95 %)
8 diff
(98.4 %id)
CD706709 normal nasopharynx .b 46 to 562 15 to 531 exact     517/531
(97 %)
5 diff
(99.1 %id)
CD706787 normal nasopharynx .b 46 to 679 9 to 642 exact     634/642
(98 %)
5 diff
(99.3 %id)
CD707708 normal nasopharynx .b 46 to 420 13 to 387       375/387
(96 %)
5 diff
(98.8 %id)
CD708108 normal nasopharynx .b 46 to 528 15 to 497 R81C     483/497
(97 %)
6 diff
(98.8 %id)
CD709052 normal nasopharynx .b 46 to 528 23 to 505 exact     483/505
(95 %)
7 diff
(98.7 %id)
CD709993 normal nasopharynx .b 46 to 350 33 to 337       305/337
(90 %)
6 diff
(98.3 %id)
FN111017 breast carcinoma .b 50 to 120 1 to 70       70/70
(100 %)
5 diff
(92.9 %id)
AB000887   .b 53 to 739 1 to 687 exact     687/687
(100 %)
0 diff
(100 %id)
NM_006274.2   .b 53 to 736 1 to 684 exact RefSeq,   684/684
(100 %)
0 diff
(100 %id)
AK311945 Spleen .b 54 to 487 1 to 434 exact     434/434
(100 %)
0 diff
(100 %id)
CD708066 normal nasopharynx .b 54 to 396 35 to 377       343/377
(90 %)
6 diff
(98.5 %id)
BP317531 pericardium .b 54 to 634 1 to 583 D25S     583/583
(100 %)
4 diff
(99.4 %id)
CD708707 normal nasopharynx .b 55 to 291 25 to 262       238/262
(90 %)
8 diff
(97.0 %id)
FN063430 breast carcinoma .b 55 to 118 6 to 69       64/69
(92 %)
6 diff
(91.4 %id)
DA943893 Spleen .b 55 to 620 2 to 567 exact capped   566/566
(100 %)
0 diff
(100 %id)
DB153510 thymus .b 55 to 583 2 to 530 exact capped   529/529
(100 %)
0 diff
(100 %id)
CD701606 normal nasopharynx .b 56 to 560 17 to 521 A17G     505/521
(96 %)
7 diff
(98.7 %id)
FN067589 breast carcinoma .b 56 to 114 59 to 1     Submitted on the opposite strand 59/65
(90 %)
0 diff
(100 %id)
CD696801 normal nasopharynx .b 58 to 490 23 to 455 exact     433/455
(95 %)
6 diff
(98.7 %id)
CD697572 normal nasopharynx .b 58 to 422 35 to 399       365/399
(91 %)
7 diff
(98.3 %id)
CD622294   .b 66 to 652 8 to 594 exact     587/611
(96 %)
7 diff
(98.9 %id)
CD622295   .b 66 to 652 603 to 17 P39L Y41T I42S V43*     587/610
(96 %)
1 diff
(99.9 %id)
BI837646 pooled pancreas and spleen .b 66 to 708 1 to 646 exact     646/797
(81 %)
6 diff
(99.3 %id)
TI_57165607   .b 66 to 708 40 to 685 exact     646/836
(77 %)
12 diff
(98.6 %id)
BC027968 Pancreas, Spleen, adult pooled .b 67 to 734 1 to 668 exact tiling clone, available from MGC, AAA   668/668
(100 %)
0 diff
(100 %id)
D31180   .b 68 to 374 1 to 308       308/330
(93 %)
2 diff
(99.4 %id)
D31431   .b 68 to 327 1 to 260       260/261
(99 %)
1 diff
(99.7 %id)
BI521023 pooled pancreas and spleen .b 68 to 734 1 to 668 exact     668/978
(68 %)
3 diff
(99.7 %id)
BQ005590 Chondrosarcoma, Left Pelvis .b 68 to 734 685 to 19 exact AAA   667/678
(98 %)
0 diff
(100 %id)
T97490 liver and spleen .b 69 to 393 21 to 347       327/347
(94 %)
9 diff
(97.5 %id)
AV727235 hypothalamus .b 71 to 545 1 to 475 exact     475/475
(100 %)
0 diff
(100 %id)
BX105269 lung .b 72 to 734 1 to 663 exact AAA   663/663
(100 %)
0 diff
(100 %id)
W05519 lung .b 72 to 528 1 to 447 W78G V79* fully sequenced,   450/450
(100 %)
9 diff
(98.0 %id)
U88321   .b 72 to 552 1 to 479 exact     479/502
(95 %)
7 diff
(98.7 %id)
AA302959 Spleen .b 75 to 374 1 to 301       301/309
(97 %)
3 diff
(99.1 %id)
CD696746 normal nasopharynx .b 85 to 417 1 to 333       333/333
(100 %)
0 diff
(100 %id)
CR623730 thymus .b 89 to 736 1 to 648 exact     648/648
(100 %)
0 diff
(100 %id)
FN096662 breast carcinoma .b 89 to 155 66 to 1     Submitted on the opposite strand 66/66
(100 %)
2 diff
(97.0 %id)
TI_57201351   .b 91 to 740 64 to 711 exact     648/952
(68 %)
13 diff
(98.7 %id)
BI823250 pooled brain, lung, testis .b 100 to 740 1 to 640 exact     640/881
(72 %)
7 diff
(99.3 %id)
BX414712 thymus .b 105 to 736 14 to 645 exact fully sequenced,   632/645
(97 %)
6 diff
(99.1 %id)
AI709311 aorta .b 173 to 730 558 to 1 exact     558/558
(100 %)
3 diff
(99.5 %id)
BG151304 normal head/neck tissue .b 190 to 501 59 to 370 A91X     312/370
(84 %)
6 diff
(98.4 %id)
CR456868   .b 191 to 487 1 to 297 exact     297/297
(100 %)
0 diff
(100 %id)
CV029558 mixed .b 191 to 489 1 to 299 exact     299/480
(62 %)
2 diff
(99.6 %id)
AI096411 heart .b 191 to 734 544 to 1 exact     544/544
(100 %)
0 diff
(100 %id)
AI523431 aorta .b 191 to 482 292 to 1       292/292
(100 %)
16 diff
(94.6 %id)
AI523424 aorta .b 191 to 730 540 to 1 exact     540/540
(100 %)
2 diff
(99.7 %id)
AI523473 aorta .b 191 to 730 540 to 1 L7I     540/540
(100 %)
7 diff
(98.8 %id)
AI660682 colon, colonic mucosa from 5 ulcerative colitispatients .b 191 to 734 555 to 11 exact AAA   545/545
(100 %)
1 diff
(99.9 %id)
AI719843 aorta .b 191 to 727 537 to 1 P16Q P39L     537/537
(100 %)
3 diff
(99.5 %id)
AI880647 aorta .b 191 to 732 542 to 1 exact     542/542
(100 %)
1 diff
(99.9 %id)
AI735583 aorta .b 191 to 746 557 to 2 exact     556/557
(99 %)
0 diff
(100 %id)
U77180   .b 191 to 734 1 to 545 exact     545/545
(100 %)
1 diff
(99.9 %id)
AI950778 lung, two pooled squamous cell carcinomas .b 206 to 734 541 to 13   AAA   529/529
(100 %)
4 diff
(99.3 %id)
BF001364 Prostate .b 229 to 735 507 to 1       507/507
(100 %)
0 diff
(100 %id)
AI707984 aorta .b 235 to 730 496 to 1       496/496
(100 %)
5 diff
(99.0 %id)
AI186175 lung .b 238 to 736 500 to 1       500/543
(92 %)
7 diff
(98.8 %id)
AI224509 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 249 to 742 493 to 1       493/497
(99 %)
1 diff
(99.8 %id)
AI708388 aorta .b 257 to 730 472 to 1       472/472
(100 %)
2 diff
(99.6 %id)
AI581755 aorta .b 281 to 730 450 to 1       450/450
(100 %)
4 diff
(99.2 %id)
BM720436 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 292 to 367 1 to 76   fully sequenced,   76/76
(100 %)
0 diff
(100 %id)
AI718724 aorta .b 307 to 730 424 to 1       424/424
(100 %)
0 diff
(100 %id)
AA632091 breast .b 311 to 734 424 to 1       424/424
(100 %)
1 diff
(99.8 %id)
AI300458 carcinoid, lung .b 311 to 734 456 to 33   AAA   424/424
(100 %)
6 diff
(98.6 %id)
AI253509 Prostate .b 332 to 736 406 to 2       405/406
(99 %)
0 diff
(100 %id)
BU740359 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 337 to 744 424 to 17   fully sequenced, AAA   408/408
(100 %)
1 diff
(99.8 %id)
AI735563 aorta .b 338 to 740 406 to 4       403/406
(99 %)
0 diff
(100 %id)
BM688801 eye, optic nerve .b 338 to 729 9 to 400       392/400
(98 %)
6 diff
(98.5 %id)
AI719120 aorta .b 347 to 728 382 to 1       382/382
(100 %)
0 diff
(100 %id)
AA680186 liver and spleen .b 353 to 744 392 to 1       392/392
(100 %)
2 diff
(99.5 %id)
FN108110 breast carcinoma .b 394 to 480 87 to 1     Submitted on the opposite strand 87/87
(100 %)
2 diff
(97.8 %id)
AI802183 carcinoid, lung .b 401 to 736 337 to 2       336/337
(99 %)
0 diff
(100 %id)
BF477915 carcinoid, lung .b 402 to 736 340 to 6       335/340
(98 %)
0 diff
(100 %id)
BX414711 thymus .b 425 to 704 280 to 1   fully sequenced,   280/280
(100 %)
0 diff
(100 %id)
AA302958 Spleen .b 429 to 744 317 to 1       317/317
(100 %)
1 diff
(99.7 %id)
AI707962 aorta .b 435 to 730 296 to 1       296/296
(100 %)
0 diff
(100 %id)
BM768365 stomach .b 440 to 734 1 to 295   AAA   295/295
(100 %)
0 diff
(100 %id)
W07401 lung .b 447 to 627 1 to 181   fully sequenced,   181/181
(100 %)
0 diff
(100 %id)
BM768409 stomach .b 457 to 646 17 to 207       191/207
(92 %)
6 diff
(97.2 %id)
FN108584 breast carcinoma .b 462 to 571 1 to 110       110/111
(99 %)
3 diff
(97.3 %id)
AA585171   .b 470 to 717 235 to 1       235/235
(100 %)
13 diff
(94.5 %id)
N71167 lung .b 498 to 735 238 to 1   fully sequenced,   238/238
(100 %)
2 diff
(99.2 %id)
AI626025 aorta .b 525 to 740 218 to 3       216/218
(99 %)
0 diff
(100 %id)
N80273 lung .b 597 to 735 140 to 1   fully sequenced,   140/140
(100 %)
0 diff
(100 %id)
AI434231 lymph node, lymphoma, follicular mixed small and largecell .c 1 to 481 481 to 1 R23X tiling clone,   481/481
(100 %)
2 diff
(99.6 %id)
DA382257 thalamus .d-u 1 to 555 2 to 556 exact tiling clone, capped   555/555
(100 %)
1 diff
(99.9 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI