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Gene CCDC9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
76 supporting clones for gene CCDC9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM737780 Ascites, stomach .a 1 to 401 1 to 401   tiling clone,   401/401
(100 %)
4 diff
(99.1 %id)
NM_015603.2   .a 16 to 2091 1 to 2076 exact RefSeq, AAA   2076/2076
(100 %)
0 diff
(100 %id)
BM737911 Ascites, stomach .a 16 to 476 1 to 461   tiling clone,   461/461
(100 %)
2 diff
(99.6 %id)
DB046187 testis .a 42 to 595 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
TI_57218471   .a 73 to 856 33 to 819       787/819
(96 %)
13 diff
(98.5 %id)
AL050284 uterus .a 77 to 2091 1 to 2009 exact tiling clone, available from DKFZ, AAA   2009/2009
(100 %)
5 diff
(99.8 %id)
BQ434271 melanotic melanoma, skin .a 87 to 900 16 to 835   tiling clone,   818/902
(90 %)
17 diff
(98.2 %id)
BI754362 brain .a 93 to 856 1 to 767       767/767
(100 %)
7 diff
(99.1 %id)
CR977312 T-Lymphocytes .a 100 to 763 1 to 667       667/667
(100 %)
5 diff
(99.3 %id)
AL517795 brain, neuroblastoma, neuroblastoma cells .a 101 to 1055 1 to 947       947/1006
(94 %)
23 diff
(97.8 %id)
BE727325 melanotic melanoma, skin .a 119 to 262 32 to 174       143/174
(82 %)
13 diff
(92.6 %id)
BC002787 Skin, melanotic melanoma. .a 120 to 2095 1 to 1974 exact tiling clone, available from MGC, AAA   1974/1974
(100 %)
8 diff
(99.6 %id)
BC009743 Skin, melanotic melanoma. .a 120 to 2095 1 to 1974   available from MGC, AAA   1974/1974
(100 %)
8 diff
(99.6 %id)
BX406409 fetal liver, Liver .a 149 to 1025 1 to 873       873/962
(90 %)
26 diff
(97.3 %id)
AW991624 breast_normal .a 204 to 434 233 to 7     Submitted on the opposite strand 227/236
(96 %)
12 diff
(95.0 %id)
CV026240 mixed .a 223 to 815 1 to 593       593/593
(100 %)
9 diff
(98.5 %id)
TI_1948136907   .a 225 to 906 130 to 818       689/1469
(46 %)
29 diff
(98.1 %id)
TI_1948136908   .a 225 to 1123 129 to 1027       899/1372
(65 %)
45 diff
(96.8 %id)
TI_1948137246   .a 225 to 927 129 to 832       704/1441
(48 %)
17 diff
(98.9 %id)
TI_1948137247   .a 225 to 1060 126 to 964       839/1333
(62 %)
44 diff
(96.7 %id)
TI_1948137591   .a 225 to 943 133 to 851       719/1442
(49 %)
33 diff
(97.8 %id)
TI_1948137592   .a 225 to 1127 127 to 1023       897/1336
(67 %)
49 diff
(96.4 %id)
TI_1948137941   .a 225 to 889 132 to 803       672/1430
(46 %)
33 diff
(97.7 %id)
TI_1948137942   .a 225 to 1040 131 to 952       822/1487
(55 %)
28 diff
(98.2 %id)
BG110455 Bone, osteosarcoma, cell line .a 409 to 1126 1 to 718       718/786
(91 %)
9 diff
(98.9 %id)
DB460658 testis .a 597 to 1079 1 to 483       483/483
(100 %)
0 diff
(100 %id)
BF341006 brain, glioblastoma with EGFR amplification .a 727 to 1413 1 to 690       690/732
(94 %)
13 diff
(98.3 %id)
CF139548 CNCAP(3)T-225 cell line, Prostate .a 732 to 1241 1 to 510       510/510
(100 %)
7 diff
(98.7 %id)
TI_154169804   .a 738 to 1307 85 to 657       573/1027
(55 %)
9 diff
(99.2 %id)
CK902266 Pancreas, Purified pancreatic islet .a 757 to 1119 1 to 363     Submitted on the opposite strand 363/363
(100 %)
2 diff
(99.5 %id)
TI_1948137593   .a 942 to 1817 1019 to 125       895/1148
(77 %)
38 diff
(96.7 %id)
BX282055 duodenal adenocarcinoma, cell line, small intestine .a 947 to 1438 1 to 492       492/492
(100 %)
1 diff
(99.8 %id)
BM476311 duodenal adenocarcinoma, cell line, small intestine .a 948 to 1854 1 to 911       911/1009
(90 %)
11 diff
(99.0 %id)
TI_1948136909   .a 959 to 1817 994 to 127       868/1150
(75 %)
25 diff
(97.9 %id)
BE159048 head_neck .a 995 to 1316 8 to 329       322/329
(97 %)
5 diff
(98.5 %id)
AW390032 stomach .a 997 to 1307 1 to 316       316/316
(100 %)
16 diff
(95.0 %id)
BE159025 head_neck .a 998 to 1316 1 to 318       318/318
(100 %)
9 diff
(97.2 %id)
BE159113 head_neck .a 1000 to 1316 1 to 316       316/316
(100 %)
6 diff
(98.2 %id)
BE068239 breast .a 1005 to 1310 36 to 347       312/356
(87 %)
16 diff
(95.6 %id)
TI_1948137943   .a 1018 to 1817 933 to 128       804/1161
(69 %)
16 diff
(98.7 %id)
AL517794 brain, neuroblastoma, neuroblastoma cells .a 1065 to 2068 1014 to 10       1005/1074
(93 %)
16 diff
(98.6 %id)
AA306074   .a 1074 to 1446 1 to 373       373/373
(100 %)
2 diff
(99.5 %id)
TI_1948137248   .a 1125 to 1817 819 to 126       694/1209
(57 %)
3 diff
(99.8 %id)
TI_1948137594   .a 1125 to 1817 824 to 129       696/1376
(50 %)
16 diff
(98.9 %id)
TI_1948137944   .a 1173 to 1817 782 to 130       653/1355
(48 %)
38 diff
(97.2 %id)
AA280258 germinal center B cell .a 1207 to 1598 8 to 398       391/398
(98 %)
6 diff
(98.5 %id)
TI_1948137249   .a 1301 to 1817 651 to 129       523/1337
(39 %)
13 diff
(99.1 %id)
BG114789 duodenal adenocarcinoma, cell line, small intestine .a 1305 to 1886 1 to 586       586/1080
(54 %)
5 diff
(99.6 %id)
BG680123 skin, squamous cell carcinoma .a 1351 to 1868 1 to 518       518/518
(100 %)
3 diff
(99.5 %id)
CU453818 epidermis .a 1446 to 1874 452 to 24     Submitted on the opposite strand 429/472
(90 %)
0 diff
(100 %id)
BQ368883 placenta_normal .a 1656 to 1757 120 to 20       101/121
(83 %)
0 diff
(100 %id)
DB526060 testis .a 1667 to 2091 1 to 425     Submitted on the opposite strand 425/425
(100 %)
4 diff
(99.1 %id)
AW468183 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .a 1671 to 2002 326 to 1   tiling clone,   326/326
(100 %)
3 diff
(99.1 %id)
CX785179 human embryonic stem cells .b 1 to 136 1 to 135   tiling clone,   135/135
(100 %)
1 diff
(99.3 %id)
BU855140 ovary, teratocarcinoma, cell line .b 39 to 840 1 to 808   tiling clone,   808/846
(95 %)
16 diff
(98.2 %id)
BQ707643 Spleen .b 247 to 698 1 to 452   tiling clone,   452/1099
(41 %)
10 diff
(99.1 %id)
BY800112 eye .b 833 to 1441 1 to 609   tiling clone,   609/609
(100 %)
1 diff
(99.9 %id)
BG996394 head_neck .b 871 to 1136 9 to 273       265/273
(97 %)
6 diff
(97.9 %id)
BF895439 marrow .b 957 to 1090 134 to 1     Submitted on the opposite strand 134/134
(100 %)
0 diff
(100 %id)
BF821239 kidney_tumor .b 965 to 1214 10 to 258       249/281
(88 %)
6 diff
(97.9 %id)
AA229687   .b 1325 to 1530 1 to 206       206/206
(100 %)
6 diff
(97.1 %id)
AA224923   .b 1326 to 1762 1 to 441   tiling clone,   441/441
(100 %)
13 diff
(97.1 %id)
AA229596   .b 1362 to 1832 469 to 1   tiling clone,   469/469
(100 %)
7 diff
(98.6 %id)
AA224833   .b 1416 to 1832 417 to 1   tiling clone,   417/417
(100 %)
7 diff
(98.4 %id)
BP423060 small intestine .c 1 to 584 1 to 584   tiling clone, Submitted on the opposite strand 584/584
(100 %)
5 diff
(99.2 %id)
TI_891526311   .c 570 to 1260 709 to 19   tiling clone,   691/760
(90 %)
11 diff
(98.6 %id)
DR731328 pooled .c 574 to 1253 683 to 2   tiling clone, Submitted on the opposite strand 683/683
(100 %)
25 diff
(96.4 %id)
CN306739 embryonic stem cells, cell lines H1, H7, andH9 .d 1 to 356 1 to 356 exact tiling clone,   356/356
(100 %)
1 diff
(99.8 %id)
AW378781 head_neck .e 1 to 457 1 to 455 exact tiling clone,   455/468
(97 %)
9 diff
(98.1 %id)
AA584799 pheochromocytoma .f-u 1 to 440 438 to 1   tiling clone,   438/438
(100 %)
3 diff
(99.4 %id)
BE719842 head_neck .g-u 1 to 253 1 to 259   tiling clone,   259/259
(100 %)
10 diff
(96.2 %id)
BF830910 head_neck .g-u 15 to 257 1 to 245   tiling clone,   245/254
(96 %)
6 diff
(97.7 %id)
AK302153 testis Gene CCDC9, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
CU457244 epidermis Gene CCDC9, variant not shown         Suspected internal deletion, this clone was ignored    
BQ777624 Pancreas, Purified pancreatic islet Gene CCDC9, variant not shown         This clone was ignored    
BQ777926 Pancreas, Purified pancreatic islet Gene CCDC9, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C