cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
AF458588 | brain | .a | 1 to 1899 | 287 to 2185 | K321R | tiling clone, AAA | 1899/2185 (86 %) | 1 diff (100.0 %id) | |
AK058105 | testis | .f | 1 to 874 | 200 to 1073 | exact | tiling clone, available from FLJ, | 874/1073 (81 %) | 0 diff (100 %id) | |
AK123220 | amygdala | .d | 1 to 1892 | 184 to 2075 | K42R | tiling clone, available from FLJ, | 1892/2075 (91 %) | 1 diff (100.0 %id) | |
AK308783 | amygdala | .g | 1 to 1248 | 338 to 1585 | K183R | tiling clone, | 1248/1585 (78 %) | 2 diff (99.9 %id) | |
AK309246 | thalamus | .c | 1 to 1177 | 295 to 1471 | K280R | tiling clone, | 1185/1471 (80 %) | 2 diff (99.9 %id) | |
AK311042 | uterus | .c | 99 to 1212 | 328 to 1447 | tiling clone, | 1126/1447 (77 %) | 11 diff (99.3 %id) | ||
BC107596 | PCR rescued clones | .b | 1 to 1636 | 151 to 1786 | Y161F K183R | tiling clone, | 1636/1786 (91 %) | 3 diff (99.9 %id) | |
BC107597 | PCR rescued clones | .a | 1 to 1892 | 151 to 2041 | K321R R375D L376W E377K M378W ... | 1891/2041 (92 %) | 2 diff (100.0 %id) | ||
BG459711 | .a | 1607 to 1891 | 301 to 17 | Submitted on the opposite strand | 285/302 (94 %) | 0 diff (100 %id) | |||
BG460117 | .a | 1607 to 1891 | 288 to 4 | Submitted on the opposite strand | 285/288 (98 %) | 0 diff (100 %id) | |||
BG460399 | .a | 1607 to 1850 | 283 to 39 | Submitted on the opposite strand | 245/253 (96 %) | 0 diff (100 %id) | |||
BG460846 | .a | 1607 to 1882 | 282 to 7 | Submitted on the opposite strand | 276/282 (97 %) | 0 diff (100 %id) | |||
BG461289 | .a | 1607 to 1892 | 307 to 22 | Submitted on the opposite strand | 286/307 (93 %) | 0 diff (100 %id) | |||
BG461576 | .a | 1607 to 1892 | 301 to 16 | Submitted on the opposite strand | 286/301 (95 %) | 0 diff (100 %id) | |||
BG461933 | .a | 1607 to 1900 | 309 to 14 | Submitted on the opposite strand | 296/309 (95 %) | 0 diff (100 %id) | |||
DA168499 | amygdala | .d | 1 to 394 | 184 to 577 | capped | 394/576 (68 %) | 1 diff (99.9 %id) | ||
DB302506 | amygdala | .d | 1347 to 1892 | 546 to 1 | 546/546 (100 %) | 0 diff (100 %id) | |||
DA387770 | thalamus | .g | 877 to 1445 | 2 to 570 | tiling clone, capped | 569/569 (100 %) | 2 diff (99.7 %id) | ||
DB311703 | thalamus | .g | 2121 to 2675 | 555 to 1 | tiling clone, | 555/555 (100 %) | 0 diff (100 %id) | ||
BX117492 | whole brain | .i-u | 1 to 508 | 522 to 15 | exact | tiling clone, AAA | 508/508 (100 %) | 0 diff (100 %id) | |
CV029749 | mixed | .a | 1 to 615 | 24 to 635 | 612/653 (93 %) | 7 diff (99.0 %id) | |||
FN122870 | breast carcinoma | .a | 370 to 451 | 81 to 1 | Submitted on the opposite strand | 81/81 (100 %) | 1 diff (98.8 %id) | ||
FN157869 | breast carcinoma | .a | 640 to 740 | 100 to 1 | Submitted on the opposite strand | 100/100 (100 %) | 3 diff (97.0 %id) | ||
DB525806 | testis | .f | 443 to 874 | 1 to 432 | Submitted on the opposite strand | 432/433 (99 %) | 2 diff (99.6 %id) | ||
AI359353 | brain, glioblastoma (pooled) | .a | 1447 to 1891 | 445 to 1 | 445/445 (100 %) | 0 diff (100 %id) | |||
AI424612 | brain, glioblastoma (pooled) | .a | 1680 to 1891 | 212 to 1 | 212/212 (100 %) | 0 diff (100 %id) | |||
AI690408 | serous papillary carcinoma, high grade, 2pooled tumors, uterus | .i-u | 24 to 257 | 234 to 1 | exact | 234/234 (100 %) | 0 diff (100 %id) | ||
AI634798 | Kidney | .a | 1621 to 2098 | 509 to 32 | 478/509 (93 %) | 0 diff (100 %id) | |||
AI650321 | Kidney | .a | 1602 to 2065 | 478 to 15 | AAA | 464/464 (100 %) | 0 diff (100 %id) | ||
AW055164 | brain, glioblastoma (pooled) | .a | 1445 to 1891 | 448 to 1 | 448/448 (100 %) | 24 diff (94.7 %id) | |||
AW188468 | colon, moderately differentiated adenocarcinoma | .a | 691 to 1221 | 531 to 1 | 531/531 (100 %) | 2 diff (99.7 %id) | |||
AW615222 | Kidney | .a | 1442 to 1892 | 451 to 1 | 451/451 (100 %) | 0 diff (100 %id) | |||
BF593824 | brain, glioblastoma (pooled) | .a | 1375 to 1891 | 517 to 1 | 517/517 (100 %) | 0 diff (100 %id) | |||
BE856330 | brain, glioblastoma (pooled) | .a | 1406 to 1891 | 486 to 1 | 486/486 (100 %) | 2 diff (99.6 %id) | |||
BF940091 | brain, glioblastoma (pooled) | .a | 1377 to 1891 | 515 to 1 | 515/515 (100 %) | 0 diff (100 %id) | |||
BF940211 | brain, glioblastoma (pooled) | .a | 1314 to 1891 | 578 to 1 | 578/578 (100 %) | 0 diff (100 %id) | |||
BF111993 | pooled | .a | 1406 to 1900 | 498 to 4 | 495/498 (99 %) | 0 diff (100 %id) | |||
BF594137 | brain, glioblastoma (pooled) | .a | 1399 to 1891 | 493 to 1 | 493/493 (100 %) | 1 diff (99.8 %id) | |||
BC015395 | Prostate, adenocarcinoma. | .f | 1 to 874 | 287 to 1160 | M149V | tiling clone, available from MGC, AAA | 874/1160 (75 %) | 2 diff (99.9 %id) | |
BG179320 | adenocarcinoma, cell line, Prostate | .a | 1 to 438 | 286 to 715 | available from MGC, | 430/956 (44 %) | 12 diff (98.8 %id) | ||
BG291599 | bladder, transitional cell papilloma, cell line | .a | 649 to 1219 | 1 to 571 | AAA | 571/571 (100 %) | 2 diff (99.7 %id) | ||
BC031994 | Skin, squamous cell carcinoma | .a | 758 to 1892 | 1 to 1136 | available from MGC, AAA | 1136/1136 (100 %) | 2 diff (99.9 %id) | ||
BG678084 | skin, squamous cell carcinoma | .a | 758 to 1616 | 1 to 863 | available from MGC, | 865/863 (100 %) | 35 diff (96.0 %id) | ||
BG743417 | skin | .a | 704 to 1467 | 1 to 778 | 780/844 (92 %) | 21 diff (97.6 %id) | |||
BC105928 | PCR rescued clones | .e | 1 to 1794 | 151 to 1942 | K183R K271S A272F L273G E274I ... | tiling clone, | 1792/1942 (92 %) | 4 diff (99.8 %id) | |
EB386556 | eye, optic nerve | .h-u | 1 to 838 | 1 to 838 | exact | tiling clone, | 838/838 (100 %) | 1 diff (99.9 %id) | |
NM_138803.3 | .a | 1 to 2509 | 338 to 2846 | exact | RefSeq, | 2509/2846 (88 %) | 0 diff (100 %id) | ||
NM_001171637.1 | .c | 99 to 1212 | 328 to 1447 | RefSeq, | 1126/1447 (77 %) | 9 diff (99.4 %id) | |||
TI_1948101547 | .a | 1 to 726 | 150 to 878 | fully sequenced, | 729/878 (83 %) | 17 diff (98.1 %id) | |||
TI_1948101548 | .a | 198 to 744 | 609 to 62 | fully sequenced, | 548/609 (89 %) | 1 diff (99.9 %id) | |||
TI_1948101714 | .a | 1 to 748 | 150 to 900 | fully sequenced, | 751/900 (83 %) | 16 diff (98.3 %id) | |||
TI_1948101715 | .a | 433 to 744 | 371 to 60 | fully sequenced, | 312/371 (84 %) | 1 diff (99.8 %id) | |||
TI_1948101882 | .a | 1 to 155 | 158 to 312 | fully sequenced, | 155/207 (74 %) | 0 diff (100 %id) | |||
TI_1948101883 | .a | 94 to 744 | 774 to 123 | fully sequenced, | 652/774 (84 %) | 2 diff (99.8 %id) | |||
TI_1948102050 | .a | 1 to 748 | 158 to 910 | fully sequenced, | 753/880 (85 %) | 17 diff (98.1 %id) | |||
TI_1948102051 | .a | 198 to 744 | 671 to 124 | fully sequenced, | 548/671 (81 %) | 1 diff (99.9 %id) | |||
BP369440 | testis | .a | 1 to 374 | 200 to 573 | 374/573 (65 %) | 0 diff (100 %id) | |||
T08245 | .e | 1 to 1794 | 151 to 1942 | tiling clone, | 1792/1942 (92 %) | 4 diff (99.8 %id) | |||
T78764 | whole brain | .h-u | 1 to 838 | 1 to 838 | tiling clone, | 838/838 (100 %) | 1 diff (99.9 %id) | ||
H11986 | whole brain | .h-u | 1 to 838 | 1 to 838 | tiling clone, | 838/838 (100 %) | 1 diff (99.9 %id) | ||
H11987 | whole brain | .a | 1 to 2509 | 338 to 2846 | RefSeq, | 2509/2846 (88 %) | 0 diff (100 %id) | ||
NM_001171637.1 | .c | 99 to 1212 | 328 to 1447 | RefSeq, | 1126/1447 (77 %) | 9 diff (99.4 %id) | |||
TI_1948101547 | .a | 1 to 726 | 150 to 878 | fully sequenced, | 729/878 (83 %) | 17 diff (98.1 %id) | |||
TI_1948101548 | .a | 198 to 744 | 609 to 62 | fully sequenced, | 548/609 (89 %) | 1 diff (99.9 %id) | |||
TI_1948101714 | .a | 1 to 748 | 150 to 900 | fully sequenced, | 751/900 (83 %) | 16 diff (98.3 %id) | |||
TI_1948101715 | .a | 433 to 744 | 371 to 60 | fully sequenced, | 312/371 (84 %) | 1 diff (99.8 %id) | |||
TI_1948101882 | .a | 1 to 155 | 158 to 312 | fully sequenced, | 155/207 (74 %) | 0 diff (100 %id) | |||
TI_1948101883 | .a | 94 to 744 | 774 to 123 | fully sequenced, | 652/774 (84 %) | 2 diff (99.8 %id) | |||
TI_1948102050 | .a | 1 to 748 | 158 to 910 | fully sequenced, | 753/880 (85 %) | 17 diff (98.1 %id) | |||
TI_1948102051 | .a | 198 to 744 | 671 to 124 | fully sequenced, | 548/671 (81 %) | 1 diff (99.9 %id) | |||
BP369440 | testis | .a | 1 to 374 | 200 to 573 | 374/573 (65 %) | 0 diff (100 %id) |
? | Gene Summary | Gene on genome | mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes C |