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Gene CCAR1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
447 supporting clones for gene CCAR1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA511293 brain .a 1 to 555 2 to 556   tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
DA519050 brain .a 12 to 511 2 to 501   capped   500/500
(100 %)
0 diff
(100 %id)
DB069778 testis .a 13 to 551 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB126990 thymus .a 34 to 650 2 to 618   capped   617/617
(100 %)
1 diff
(99.9 %id)
DB461019 testis .a 62 to 704 1 to 643       643/643
(100 %)
7 diff
(99.0 %id)
AF465616   .a 70 to 3925 1 to 3856 S650G D853G N1104S     3856/3856
(100 %)
6 diff
(99.9 %id)
AK023438 placenta .a 70 to 2211 1 to 2142   available from FLJ,   2142/2142
(100 %)
1 diff
(100.0 %id)
AL705594 human skeletal muscle .a 70 to 527 1 to 458       458/458
(100 %)
0 diff
(100 %id)
NM_018237.2   .a 70 to 3927 1 to 3858 exact RefSeq,   3858/3858
(100 %)
0 diff
(100 %id)
DA064655 cerebellum .a 71 to 630 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA188739 amygdala .a 71 to 627 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA506889 brain .a 71 to 629 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA595414 lung .a 71 to 546 2 to 477   capped   476/476
(100 %)
0 diff
(100 %id)
DA959466 Spleen .a 71 to 623 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB291829 uterus .a 71 to 664 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA507036 brain .a 72 to 636 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB099357 testis .a 72 to 667 2 to 597   capped   596/598
(99 %)
2 diff
(99.7 %id)
DB225926 trachea .a 72 to 629 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA022264   .a 73 to 633 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB128775 thymus .a 74 to 623 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA645089   .a 80 to 675 2 to 598   capped   597/597
(100 %)
2 diff
(99.7 %id)
DA006669   .a 82 to 633 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA166266 amygdala .a 82 to 633 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA295335 hippocampus .a 82 to 660 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA441811 tongue, tumor tissue .a 82 to 664 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA508525 brain .a 82 to 647 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA510462 brain .a 82 to 663 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA818247   .a 82 to 648 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB207393 trachea .a 82 to 706 2 to 626   capped   625/635
(98 %)
2 diff
(99.7 %id)
DB209127 trachea .a 82 to 577 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
DA522336 brain .a 84 to 645 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BF678761 Prostate .a 84 to 706 1 to 624   available from MGC,   624/881
(70 %)
16 diff
(98.2 %id)
BM786237 Ascites, stomach .a 88 to 792 1 to 706       706/706
(100 %)
2 diff
(99.8 %id)
DB150055 thymus .a 88 to 647 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA613220   .a 89 to 659 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA941583 Spleen .a 89 to 584 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
DB255246 uterus .a 89 to 661 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA148688 amygdala .a 90 to 643 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA156385 amygdala .a 90 to 665 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA192287 amygdala .a 90 to 695 2 to 607   capped   606/606
(100 %)
1 diff
(99.9 %id)
DA478427   .a 90 to 665 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA500377 brain .a 90 to 658 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA555297   .a 90 to 640 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA619996   .a 90 to 659 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA769840 brain .a 90 to 648 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA976847 synovial membrane tissue from rheumatioidarthritis .a 90 to 633 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DN918868   .a 91 to 160 1 to 70       70/70
(100 %)
3 diff
(95.8 %id)
AK001701   .a 92 to 2582 1 to 2491   available from FLJ,   2491/2491
(100 %)
3 diff
(99.9 %id)
AY249140   .a 92 to 3935 1 to 3844 D853G N1104S     3844/3845
(99 %)
5 diff
(99.9 %id)
DA382819 thalamus .a 92 to 729 2 to 639   capped   638/638
(100 %)
1 diff
(99.9 %id)
DA483247 brain .a 92 to 928 2 to 846   capped   845/879
(96 %)
19 diff
(97.9 %id)
DA817948   .a 92 to 659 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB068495 testis .a 92 to 620 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA457489 tongue, tumor tissue .a 93 to 652 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
AK292649 thymus .a 95 to 2582 1 to 2488       2488/2488
(100 %)
3 diff
(99.9 %id)
AK307704 trachea .a 95 to 2606 1 to 2512       2512/2512
(100 %)
3 diff
(99.9 %id)
DA180302 amygdala .a 95 to 656 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA441867 tongue, tumor tissue .a 95 to 666 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA009103 adrenal gland .a 96 to 648 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA028313   .a 96 to 667 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA033040   .a 96 to 659 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA045339 bladder .a 96 to 666 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA051204   .a 96 to 663 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA055147 cerebellum .a 96 to 650 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA194675 amygdala .a 96 to 691 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DA280343 corpus callosum .a 96 to 643 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA322171 hippocampus .a 96 to 735 2 to 640   capped   639/639
(100 %)
2 diff
(99.7 %id)
DA322895 hippocampus .a 96 to 584 2 to 490   capped   489/489
(100 %)
0 diff
(100 %id)
DA355935 subthalamic nucleus .a 96 to 657 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA383778 thalamus .a 96 to 727 2 to 633   capped   632/632
(100 %)
2 diff
(99.7 %id)
DA419941 cord Blood .a 96 to 670 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA477365   .a 96 to 650 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA490244 brain .a 96 to 586 2 to 492   capped   491/491
(100 %)
0 diff
(100 %id)
DA509723 brain .a 96 to 672 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA515356 brain .a 96 to 641 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA528285 brain .a 96 to 648 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA530896 brain .a 96 to 695 2 to 601   capped   600/600
(100 %)
1 diff
(99.9 %id)
DA563106 heart .a 96 to 662 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA609485   .a 96 to 620 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
DA625090 Kidney .a 96 to 647 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA643569   .a 96 to 472 2 to 378   capped   377/377
(100 %)
0 diff
(100 %id)
DA645598   .a 96 to 660 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA647527   .a 96 to 904 2 to 815   capped   812/821
(98 %)
19 diff
(97.7 %id)
DA807870 brain .a 96 to 684 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA835190 placenta .a 96 to 648 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA865492 Prostate .a 96 to 620 2 to 527   capped   526/526
(100 %)
1 diff
(99.9 %id)
DA883139   .a 96 to 665 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA901284   .a 96 to 591 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
DA911527   .a 96 to 650 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA938567 Spleen .a 96 to 696 2 to 602   capped   601/601
(100 %)
1 diff
(99.9 %id)
DA956198 Spleen .a 96 to 651 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA961214 Spleen .a 96 to 653 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA989396 synovial membrane tissue from rheumatioidarthritis .a 96 to 650 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DB013874 esophageal, tumor tissue .a 96 to 665 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB013961 esophageal, tumor tissue .a 96 to 663 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB016798 esophageal, tumor tissue .a 96 to 659 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB063867 testis .a 96 to 634 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB127355 thymus .a 96 to 658 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB156874 thymus .a 96 to 672 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB195301 trachea .a 96 to 614 2 to 520   capped   519/519
(100 %)
0 diff
(100 %id)
DB207342 trachea .a 96 to 738 2 to 647   capped   646/646
(100 %)
5 diff
(99.3 %id)
DB210924 trachea .a 96 to 706 2 to 613   capped   612/622
(98 %)
3 diff
(99.6 %id)
DB219227 trachea .a 96 to 646 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB269906 uterus .a 96 to 647 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB288168 uterus .a 96 to 639 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA454729 tongue, tumor tissue .a 97 to 663 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA659464   .a 97 to 669 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB127868 thymus .a 97 to 666 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA952930 Spleen .a 99 to 646 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
CN482255 eye .a 100 to 781 1 to 682       682/682
(100 %)
1 diff
(99.9 %id)
DA406607 thalamus .a 102 to 664 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA644924   .a 102 to 698 2 to 598   capped   597/597
(100 %)
1 diff
(99.9 %id)
DA901126   .a 103 to 616 2 to 515   capped   514/514
(100 %)
0 diff
(100 %id)
BU165344 eye, retinoblastoma .a 107 to 991 1 to 885       885/885
(100 %)
1 diff
(99.9 %id)
BU153703 eye, retinoblastoma .a 107 to 970 1 to 866       866/895
(96 %)
15 diff
(98.4 %id)
CN481452 eye .a 109 to 706 1 to 598       598/605
(98 %)
2 diff
(99.7 %id)
BF980722 duodenal adenocarcinoma, cell line, small intestine .a 109 to 819 1 to 710       710/1081
(65 %)
13 diff
(98.8 %id)
BC130626 Brain, cerebellum, PCR rescued clones .a 111 to 3727 1 to 3617 exact     3617/3617
(100 %)
0 diff
(100 %id)
BC132725 Brain, cerebellum, PCR rescued clones .a 111 to 3730 1 to 3620 exact tiling clone,   3620/3620
(100 %)
0 diff
(100 %id)
AA134337 colon, tumor .a 112 to 512 1 to 403       402/411
(97 %)
5 diff
(98.8 %id)
BC108682 Skin, melanotic melanoma. .a 122 to 2582 1 to 2461   AAA   2461/2461
(100 %)
1 diff
(100.0 %id)
BC026036 Muscle, rhabdomyosarcoma .a 138 to 2582 1 to 2445   available from MGC, AAA   2445/2445
(100 %)
1 diff
(100.0 %id)
BF797223 lymph, lymphoma, cell line .a 159 to 967 1 to 812       810/907
(89 %)
36 diff
(96.1 %id)
BQ226314 embryonal carcinoma, cell line, testis .a 159 to 1021 1 to 870       870/892
(97 %)
15 diff
(98.4 %id)
DR763082 embryonic stem .a 162 to 982 22 to 842       821/842
(97 %)
7 diff
(99.2 %id)
BC089420 Lymph, normal germinal center B cells .a 178 to 2582 1 to 2405   AAA   2405/2405
(100 %)
3 diff
(99.9 %id)
DN994410 brain, whole brain .a 201 to 843 1 to 643       643/643
(100 %)
3 diff
(99.6 %id)
EC496624 Prostate .a 214 to 301 1 to 87       87/87
(100 %)
3 diff
(96.6 %id)
CN399502 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 277 to 573 1 to 297       297/297
(100 %)
0 diff
(100 %id)
CN399504 embryonic stem cells, cell lines H1, H7, andH9 .a 308 to 983 13 to 689       677/689
(98 %)
8 diff
(98.9 %id)
BM787547 stomach .a 377 to 1087 1 to 712       712/712
(100 %)
2 diff
(99.8 %id)
CX866372 embryonic stem .a 396 to 1169 1 to 774       774/774
(100 %)
1 diff
(99.9 %id)
BF982058 duodenal adenocarcinoma, cell line, small intestine .a 471 to 1231 1 to 758       758/1069
(70 %)
17 diff
(98.5 %id)
CU445289 epidermis .a 511 to 1146 27 to 662       636/662
(96 %)
7 diff
(99.0 %id)
CX865435 embryonic stem .a 511 to 1359 1 to 849       849/849
(100 %)
2 diff
(99.8 %id)
TI_154165094   .a 541 to 1038 80 to 577       498/501
(99 %)
5 diff
(99.1 %id)
TI_154165095   .a 541 to 1041 80 to 579       500/500
(100 %)
5 diff
(99.0 %id)
TI_154165138   .a 541 to 1033 79 to 571       493/494
(99 %)
2 diff
(99.6 %id)
TI_1752768544   .a 637 to 1361 1 to 725       725/726
(99 %)
11 diff
(98.5 %id)
TI_1607545053   .a 663 to 1304 6 to 646       641/646
(99 %)
12 diff
(98.2 %id)
TI_2194643295   .a 675 to 1657 17 to 1000       984/1090
(90 %)
26 diff
(97.7 %id)
AK000741   .a 686 to 2582 1 to 1897   available from FLJ,   1897/1897
(100 %)
1 diff
(100.0 %id)
BG030398 breast, mammary adenocarcinoma, cell line .a 742 to 1404 1 to 664       664/945
(70 %)
7 diff
(99.3 %id)
DA662062   .a 787 to 1339 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BM454674 embryonal carcinoma, cell line, testis .a 880 to 1625 1 to 751       751/1056
(71 %)
13 diff
(98.8 %id)
CN399509 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 915 to 1581 1 to 667       667/667
(100 %)
2 diff
(99.8 %id)
BG498985 adenocarcinoma, Prostate .a 967 to 1653 1 to 689       689/700
(98 %)
14 diff
(98.0 %id)
TI_2194642865   .a 987 to 1814 7 to 836       830/847
(97 %)
11 diff
(98.8 %id)
TI_1607544519   .a 990 to 1780 11 to 807       797/810
(98 %)
16 diff
(98.1 %id)
DN915178   .a 996 to 1736 730 to 1       735/730
(100 %)
19 diff
(97.4 %id)
BG403542 bladder, transitional cell papilloma, cell line .a 1008 to 1747 1 to 735       735/1080
(68 %)
14 diff
(98.8 %id)
AA309118 colon .a 1048 to 1558 1 to 511       511/511
(100 %)
0 diff
(100 %id)
BG283586 adenocarcinoma, cell line, Prostate .a 1079 to 1816 1 to 738       736/972
(75 %)
9 diff
(99.1 %id)
ES312126 frontal balding hair, skin .a 1139 to 1261 1 to 119       119/129
(92 %)
11 diff
(91.5 %id)
FN085457 breast carcinoma .a 1306 to 1408 105 to 2     Submitted on the opposite strand 104/105
(99 %)
0 diff
(100 %id)
CN399506 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1315 to 1914 9 to 608       600/608
(98 %)
6 diff
(99.1 %id)
BG261212 bladder, transitional cell papilloma, cell line .a 1337 to 2109 1 to 772       772/822
(93 %)
8 diff
(99.1 %id)
BE617450 adenocarcinoma, colon .a 1400 to 2112 1 to 702       702/901
(77 %)
22 diff
(97.6 %id)
BG117553 adenocarcinoma, cell line, Liver .a 1415 to 2110 1 to 701       701/958
(73 %)
12 diff
(98.8 %id)
AK001452   .a 1459 to 3925 1 to 2467   available from FLJ,   2467/2467
(100 %)
4 diff
(99.9 %id)
BC015475 Lung, carcinoma, large cellundifferentiated. .a 1461 to 2620 1 to 1160   available from MGC, AAA   1160/1160
(100 %)
1 diff
(100.0 %id)
BF829287 head_normal .a 1485 to 1649 28 to 195       168/199
(84 %)
18 diff
(91.0 %id)
TI_151734544   .a 1487 to 2025 610 to 72       539/1070
(50 %)
1 diff
(100.0 %id)
CN399503 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1492 to 2171 1 to 680       680/680
(100 %)
0 diff
(100 %id)
FN124054 breast carcinoma .a 1599 to 1684 1 to 84       84/84
(100 %)
8 diff
(90.5 %id)
FN059232 breast carcinoma .a 1639 to 1746 108 to 1     Submitted on the opposite strand 108/109
(99 %)
0 diff
(100 %id)
BF665644 brain, primitive neuroectoderm .a 1656 to 2295 1 to 636       636/750
(84 %)
7 diff
(99.1 %id)
BG576923 breast, mammary adenocarcinoma, cell line .a 1659 to 2453 1 to 798       798/799
(99 %)
7 diff
(99.2 %id)
BM913566 amelanotic melanoma, cell line, skin .a 1661 to 2593 22 to 963       942/1048
(89 %)
26 diff
(97.6 %id)
FN103706 breast carcinoma .a 1671 to 1773 100 to 1     Submitted on the opposite strand 100/100
(100 %)
3 diff
(97.0 %id)
TI_1607546133   .a 1691 to 2242 1 to 550       550/560
(98 %)
19 diff
(96.7 %id)
BE617899 adenocarcinoma, colon .a 1736 to 2570 840 to 1       840/852
(98 %)
13 diff
(98.5 %id)
TI_1752768688   .a 1815 to 2848 13 to 1058       1046/1206
(86 %)
31 diff
(97.5 %id)
BG771066 adenocarcinoma, Prostate .a 1857 to 2468 1 to 613       613/613
(100 %)
3 diff
(99.6 %id)
BQ773062 Chondrosarcoma Cell line .a 1858 to 2582 738 to 17   AAA   722/722
(100 %)
3 diff
(99.6 %id)
TI_154134062   .a 1896 to 2605 827 to 88       629/1049
(59 %)
48 diff
(95.5 %id)
FN067587 breast carcinoma .a 1914 to 2003 89 to 1     Submitted on the opposite strand 89/89
(100 %)
1 diff
(98.9 %id)
DA643798   .a 1986 to 2530 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
BF700281 brain, primitive neuroectoderm .a 2003 to 2714 1 to 706       706/834
(84 %)
71 diff
(91.5 %id)
CN399505 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2011 to 2592 1 to 582       582/582
(100 %)
0 diff
(100 %id)
TI_2194643299   .a 2025 to 3072 12 to 1060       1049/1168
(89 %)
29 diff
(97.6 %id)
TI_2194642856   .a 2073 to 2920 1 to 846       846/886
(95 %)
17 diff
(98.1 %id)
TI_1752768550   .a 2074 to 2816 1 to 742       742/763
(97 %)
23 diff
(97.0 %id)
TI_1607544521   .a 2082 to 2876 13 to 809       797/813
(98 %)
14 diff
(98.3 %id)
DB329468 Prostate .a 2086 to 2571 486 to 1       486/486
(100 %)
1 diff
(99.8 %id)
FN132127 breast carcinoma .a 2123 to 2219 1 to 98       98/103
(95 %)
2 diff
(98.1 %id)
CB134825 Liver .a 2138 to 2724 1 to 587       587/587
(100 %)
0 diff
(100 %id)
BQ423466 embryonal carcinoma, cell line, testis .a 2151 to 2922 1 to 778       778/917
(84 %)
9 diff
(99.1 %id)
FN071739 breast carcinoma .a 2168 to 2278 111 to 1     Submitted on the opposite strand 111/112
(99 %)
0 diff
(100 %id)
AA134338 colon, tumor .a 2168 to 2598 435 to 1       435/444
(97 %)
3 diff
(99.4 %id)
DA525267 brain .a 2171 to 2726 2 to 559   capped   558/562
(99 %)
3 diff
(99.5 %id)
BX094727 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 2181 to 2627 461 to 15   AAA   447/447
(100 %)
0 diff
(100 %id)
BX645446   .a 2196 to 2908 1 to 711       711/711
(100 %)
4 diff
(99.5 %id)
BF155707 head_neck .a 2197 to 2679 486 to 7       480/486
(98 %)
2 diff
(99.6 %id)
AA935005 metastatic prostate bone lesion .a 2220 to 2588 1 to 369       369/371
(99 %)
5 diff
(98.7 %id)
AI311237 bronchioalveolar carcinoma, lung .a 2222 to 2582 10 to 370   AAA Submitted on the opposite strand 361/370
(97 %)
6 diff
(98.4 %id)
AI336661 invasive adenocarcinoma, lung .a 2222 to 2582 10 to 370   AAA Submitted on the opposite strand 361/370
(97 %)
6 diff
(98.4 %id)
AI344929 invasive adenocarcinoma, lung .a 2222 to 2573 39 to 390   AAA Submitted on the opposite strand 352/390
(90 %)
6 diff
(98.5 %id)
AI343171 invasive adenocarcinoma, lung .a 2222 to 2580 10 to 368   AAA Submitted on the opposite strand 359/370
(97 %)
7 diff
(98.2 %id)
AI335437 invasive adenocarcinoma, lung .a 2222 to 2572 36 to 387     Submitted on the opposite strand 352/422
(83 %)
8 diff
(98.2 %id)
AW268074 invasive adenocarcinoma, lung .a 2222 to 2573 10 to 364     Submitted on the opposite strand 355/364
(97 %)
8 diff
(97.9 %id)
AW274348 invasive adenocarcinoma, lung .a 2222 to 2610 10 to 397     Submitted on the opposite strand 388/407
(95 %)
14 diff
(96.6 %id)
BG942265 blood .a 2231 to 2584 1 to 354       354/354
(100 %)
3 diff
(99.2 %id)
AW262626 brain, three pooled meningiomas .a 2243 to 2713 471 to 1       471/471
(100 %)
0 diff
(100 %id)
AW593153 pooled .a 2244 to 2599 370 to 15       356/370
(96 %)
14 diff
(96.3 %id)
FN142224 breast carcinoma .a 2245 to 2348 104 to 1     Submitted on the opposite strand 104/109
(95 %)
0 diff
(100 %id)
TI_2194643303   .a 2248 to 3320 1 to 1082       1082/1082
(100 %)
34 diff
(96.9 %id)
AA662650 normal prostate, Prostate .a 2274 to 2586 313 to 1       313/313
(100 %)
0 diff
(100 %id)
AA730055 germinal center B cell .a 2274 to 2604 333 to 3       331/333
(99 %)
0 diff
(100 %id)
CB134070 Liver .a 2294 to 2893 1 to 599       599/599
(100 %)
1 diff
(99.9 %id)
FN132994 breast carcinoma .a 2303 to 2382 1 to 80       80/81
(98 %)
1 diff
(98.8 %id)
BP418533 small intestine .a 2309 to 2684 1 to 374     Submitted on the opposite strand 374/374
(100 %)
2 diff
(99.5 %id)
AA782687 bone marrow stroma .a 2330 to 2581 252 to 1       252/252
(100 %)
0 diff
(100 %id)
CN399501 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2333 to 2525 1 to 193       193/193
(100 %)
0 diff
(100 %id)
FN067254 breast carcinoma .a 2340 to 2429 92 to 1     Submitted on the opposite strand 92/92
(100 %)
4 diff
(95.7 %id)
FN070148 breast carcinoma .a 2340 to 2429 90 to 1     Submitted on the opposite strand 90/90
(100 %)
0 diff
(100 %id)
TI_149270959   .a 2356 to 2777 131 to 552     Submitted on the opposite strand 422/1095
(38 %)
10 diff
(99.1 %id)
AW894855 nervous_normal .a 2360 to 2680 321 to 1       321/321
(100 %)
8 diff
(97.6 %id)
AI933533 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 2371 to 2627 257 to 1       257/264
(97 %)
1 diff
(99.7 %id)
FN143974 breast carcinoma .a 2392 to 2488 98 to 6     Submitted on the opposite strand 93/98
(94 %)
0 diff
(100 %id)
CN399507 embryonic stem cells, cell lines H1, H7, andH9 .a 2393 to 3016 1 to 625       625/625
(100 %)
3 diff
(99.6 %id)
AW193002 adenocarcinoma, Pancreas .a 2400 to 2699 336 to 38   AAA   299/299
(100 %)
7 diff
(97.7 %id)
FN057907 breast carcinoma .a 2425 to 2527 103 to 1     Submitted on the opposite strand 103/103
(100 %)
0 diff
(100 %id)
GD145811   .a 2426 to 2589 1 to 166       166/202
(82 %)
9 diff
(95.6 %id)
CF122040 CNCAP(3)T-225 cell line, Prostate .a 2456 to 3075 1 to 619       619/619
(100 %)
6 diff
(99.1 %id)
TI_154181460   .a 2460 to 3370 64 to 974       911/990
(92 %)
50 diff
(95.0 %id)
FN163288 breast carcinoma .a 2481 to 2582 5 to 107       103/107
(96 %)
6 diff
(94.4 %id)
TI_1752768692   .a 2501 to 3464 13 to 970       958/1118
(85 %)
19 diff
(98.4 %id)
TI_2194643292   .a 2506 to 3692 16 to 1196       1181/1202
(98 %)
61 diff
(95.0 %id)
BG119558 adenocarcinoma, cell line, Liver .a 2526 to 3324 1 to 792       792/795
(99 %)
23 diff
(97.2 %id)
CN357844 embryonic stem cells, DMSO-treated H9 cellline .a 2527 to 3279 8 to 761       754/761
(99 %)
8 diff
(99.0 %id)
BI861320 breast, mammary adenocarcinoma, cell line .a 2550 to 3365 1 to 820       820/820
(100 %)
13 diff
(98.5 %id)
TI_57189237   .a 2550 to 3365 55 to 874       820/820
(100 %)
13 diff
(98.5 %id)
TI_2194642867   .a 2563 to 3518 17 to 976       960/977
(98 %)
28 diff
(97.2 %id)
BM905703 leiomyosarcoma, uterus .a 2623 to 3582 1 to 969       971/1054
(92 %)
39 diff
(96.3 %id)
TI_2194645316   .a 2626 to 3730 1147 to 52     Submitted on the opposite strand 1096/1243
(88 %)
20 diff
(98.4 %id)
BI090321 cervix .a 2629 to 3273 1 to 645       645/645
(100 %)
6 diff
(99.1 %id)
BU570826 testis .a 2632 to 3381 1 to 758       758/958
(79 %)
24 diff
(97.5 %id)
T24490   .a 2637 to 2753 1 to 117       117/117
(100 %)
0 diff
(100 %id)
BG288572 bladder, transitional cell papilloma, cell line .a 2649 to 3373 1 to 729       729/1138
(64 %)
21 diff
(98.2 %id)
AA373813 lung .a 2708 to 2893 1 to 186       186/186
(100 %)
0 diff
(100 %id)
TI_1607547317   .a 2728 to 3730 1068 to 70       999/1137
(87 %)
8 diff
(99.3 %id)
AA085664   .a 2733 to 3160 1 to 428     Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 428/428
(100 %)
0 diff
(100 %id)
FN055438 breast carcinoma .a 2738 to 2827 1 to 90       90/92
(97 %)
1 diff
(99.0 %id)
CV575825 cornea, eye .a 2738 to 3367 1 to 630       630/630
(100 %)
0 diff
(100 %id)
CN357845 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2741 to 3487 751 to 5     Submitted on the opposite strand 747/751
(99 %)
1 diff
(99.9 %id)
CB134427 Liver .a 2766 to 3246 1 to 481       481/481
(100 %)
0 diff
(100 %id)
CR982620 T-Lymphocytes .a 2781 to 3613 1 to 831       832/832
(100 %)
7 diff
(99.2 %id)
BG180112 adenocarcinoma, cell line, Prostate .a 2785 to 3531 1 to 746       746/1108
(67 %)
23 diff
(98.0 %id)
BQ931617 eye, normal pigmented retinal epithelium .a 2833 to 3645 1 to 820       820/935
(87 %)
17 diff
(98.2 %id)
TI_2194646318   .a 2854 to 3730 940 to 63     Submitted on the opposite strand 878/940
(93 %)
3 diff
(99.7 %id)
FN095948 breast carcinoma .a 2856 to 2954 1 to 103       103/103
(100 %)
6 diff
(94.2 %id)
BE180553 head_neck .a 2866 to 3530 1 to 662       662/663
(99 %)
8 diff
(98.8 %id)
TI_2194642847   .a 2888 to 3730 1 to 853       851/896
(94 %)
23 diff
(97.5 %id)
TI_1607544523   .a 2888 to 3730 1 to 845       845/965
(87 %)
16 diff
(98.4 %id)
TI_1752768548   .a 2889 to 3612 1 to 724       724/724
(100 %)
8 diff
(98.9 %id)
CB131967 Liver .a 2889 to 3437 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
EC487772 Prostate .a 2956 to 3071 116 to 1       116/116
(100 %)
0 diff
(100 %id)
BF760166 colon .a 2980 to 3274 18 to 312       295/317
(93 %)
10 diff
(96.9 %id)
AA442527   .a 2986 to 3463 1 to 478       478/478
(100 %)
0 diff
(100 %id)
AA984772 schizophrenic brain S-11 frontal lobe .a 2986 to 3391 1 to 406     Submitted on the opposite strand 406/406
(100 %)
0 diff
(100 %id)
CB136079 Liver .a 3025 to 3660 1 to 635       635/635
(100 %)
1 diff
(99.9 %id)
FN121983 breast carcinoma .a 3031 to 3142 1 to 112       112/112
(100 %)
2 diff
(98.3 %id)
BF353570 head_neck .a 3042 to 3279 12 to 249       238/249
(95 %)
8 diff
(96.8 %id)
CN357842 embryonic stem cells, DMSO-treated H9 cellline .a 3155 to 3787 1 to 634       634/634
(100 %)
2 diff
(99.7 %id)
AA373153 lung .a 3207 to 3378 1 to 172       172/172
(100 %)
0 diff
(100 %id)
CX866304 embryonic stem .a 3370 to 3930 586 to 26   tiling clone, AAA   561/565
(99 %)
1 diff
(99.9 %id)
AW304931 brain, three pooled meningiomas .a 3400 to 3855 456 to 1       456/456
(100 %)
0 diff
(100 %id)
AA085613   .a 3444 to 3851 421 to 12   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 410/410
(100 %)
2 diff
(99.6 %id)
AW197240 pooled germ cell tumors .a 3456 to 3852 397 to 1       397/397
(100 %)
0 diff
(100 %id)
CK430477 eye, lacrimal gland .a 3471 to 3925 1 to 455   AAA   455/455
(100 %)
0 diff
(100 %id)
FN106872 breast carcinoma .a 3495 to 3595 1 to 100       100/100
(100 %)
1 diff
(99.0 %id)
BM747799 stomach .a 3501 to 3851 1 to 351   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 351/351
(100 %)
0 diff
(100 %id)
AJ713017 bone marrow .a 3517 to 3670 1 to 154       154/154
(100 %)
0 diff
(100 %id)
EB388530 eye, optic nerve .a 3527 to 3925 1 to 399   AAA   399/399
(100 %)
0 diff
(100 %id)
FN175939 breast carcinoma .a 3578 to 3666 89 to 1     Submitted on the opposite strand 89/89
(100 %)
0 diff
(100 %id)
BG205733   .a 3585 to 3806 12 to 229       218/229
(95 %)
9 diff
(96.1 %id)
FN162841 breast carcinoma .a 3598 to 3694 1 to 97       97/100
(97 %)
1 diff
(99.0 %id)
D20893   .a 3606 to 3772 1 to 167     Submitted on the opposite strand 167/169
(98 %)
1 diff
(99.5 %id)
BM782353 stomach .a 3700 to 3925 1 to 226   AAA   226/226
(100 %)
0 diff
(100 %id)
BM782394 stomach .a 3700 to 3925 1 to 226   AAA   226/226
(100 %)
0 diff
(100 %id)
BM782712 stomach .a 3700 to 3925 1 to 226   AAA   226/226
(100 %)
0 diff
(100 %id)
GD143277   .a 3723 to 3925 1 to 203   AAA   203/203
(100 %)
1 diff
(99.6 %id)
FN062530 breast carcinoma .a 3775 to 3887 1 to 113       113/113
(100 %)
1 diff
(99.2 %id)
DC355614   .b 1 to 519 2 to 520   tiling clone,   520/520
(100 %)
0 diff
(100 %id)
DC341526 thalamus .b 59 to 655 1 to 597       597/597
(100 %)
1 diff
(99.9 %id)
DC351001 brain .b 76 to 649 1 to 574       574/579
(99 %)
4 diff
(99.4 %id)
DC328787 corpus callosum .b 77 to 637 1 to 561       561/564
(99 %)
3 diff
(99.5 %id)
DC308872 cerebellum .b 79 to 662 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
DC410342 thymus .b 79 to 680 1 to 603       603/603
(100 %)
2 diff
(99.7 %id)
DC320148 brain .b 80 to 641 1 to 562       562/562
(100 %)
2 diff
(99.7 %id)
DC404136 testis .b 80 to 665 1 to 586       586/586
(100 %)
1 diff
(99.9 %id)
AK299307   .b 83 to 3306 1 to 3224   tiling clone,   3224/3224
(100 %)
2 diff
(100.0 %id)
DC313182 amygdala .b 83 to 551 1 to 469       469/469
(100 %)
0 diff
(100 %id)
DC316978 amygdala .b 83 to 640 1 to 558       558/558
(100 %)
1 diff
(99.9 %id)
DC317185 amygdala .b 83 to 500 1 to 418       418/418
(100 %)
1 diff
(99.8 %id)
DC336955 substantia nigra .b 83 to 669 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
DC340728 thalamus .b 83 to 701 1 to 619       619/619
(100 %)
2 diff
(99.7 %id)
DC347871 tongue, tumor tissue .b 83 to 644 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC427908   .b 83 to 654 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
DC351522 brain .b 83 to 630 1 to 548       548/548
(100 %)
0 diff
(100 %id)
DC353601 brain .b 83 to 680 1 to 598       598/598
(100 %)
2 diff
(99.7 %id)
DC361048   .b 83 to 660 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DC366847   .b 83 to 614 1 to 532       532/534
(99 %)
3 diff
(99.5 %id)
DC370492   .b 83 to 624 1 to 543       543/543
(100 %)
3 diff
(99.5 %id)
DC372379   .b 83 to 641 1 to 559       559/559
(100 %)
2 diff
(99.7 %id)
DC378711   .b 83 to 636 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
DC378968 pericardium .b 83 to 660 1 to 578   tiling clone,   578/578
(100 %)
0 diff
(100 %id)
DC389049 Spleen .b 83 to 647 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
DC407500 thymus .b 83 to 641 1 to 560       560/560
(100 %)
2 diff
(99.7 %id)
DC422773 uterus .b 83 to 619 1 to 538       538/538
(100 %)
2 diff
(99.7 %id)
DA787364 brain .b 84 to 591 2 to 510   capped   509/509
(100 %)
2 diff
(99.7 %id)
BU431192 lymph .b 278 to 693 1 to 416       416/416
(100 %)
6 diff
(98.6 %id)
TI_154153021   .b 285 to 859 81 to 655       575/575
(100 %)
7 diff
(98.8 %id)
BJ990234 hepatoblastoma .b 2713 to 3292 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BU181074 embryonal carcinoma, cell line, testis .b 3283 to 4149 1 to 872   tiling clone,   872/873
(99 %)
8 diff
(99.1 %id)
BG541831 lung .b 3549 to 4407 1 to 849       849/877
(96 %)
42 diff
(95.3 %id)
BG028007 Bone, osteosarcoma, cell line .b 3555 to 4281 1 to 725       725/943
(76 %)
25 diff
(97.4 %id)
CB959030 Pooled-Glandular .b 3680 to 4402 1 to 736       736/736
(100 %)
14 diff
(98.1 %id)
CB162622 Liver .b 3734 to 4109 3 to 378       376/574
(65 %)
6 diff
(99.0 %id)
DB636717 testis .b 3754 to 4395 1 to 642     Submitted on the opposite strand 642/642
(100 %)
1 diff
(99.9 %id)
AW008184 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 3921 to 4395 475 to 1       475/475
(100 %)
0 diff
(100 %id)
DB515301 testis .b 3969 to 4395 1 to 427     Submitted on the opposite strand 427/427
(100 %)
1 diff
(99.8 %id)
BU617955 Bone, Subchondral Bone .b 4040 to 4693 672 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 654/654
(100 %)
0 diff
(100 %id)
BJ990235 hepatoblastoma .b 4161 to 4639 480 to 1       480/480
(100 %)
1 diff
(99.8 %id)
AI890840 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 4173 to 4693 521 to 1       521/521
(100 %)
0 diff
(100 %id)
BP417816 small intestine .b 4350 to 4695 1 to 346   tiling clone, Submitted on the opposite strand 346/348
(99 %)
1 diff
(99.8 %id)
CN359770 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 4420 to 4695 1 to 276       276/279
(98 %)
1 diff
(99.7 %id)
AK298004 lung .c 1 to 2462 2 to 2463   tiling clone,   2463/2463
(100 %)
3 diff
(99.9 %id)
DC358305 lung .c 1 to 597 2 to 598       598/598
(100 %)
2 diff
(99.7 %id)
DC365192   .c 22 to 502 1 to 481       481/481
(100 %)
3 diff
(99.4 %id)
TI_2194645721   .c 2369 to 3404 1095 to 68   tiling clone,   1028/1245
(82 %)
12 diff
(99.1 %id)
BX647943 human endometrium carcinoma cell line .d 1 to 2424 6 to 2429 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 2429/2429
(100 %)
2 diff
(100.0 %id)
AK122871 brain .e 1 to 2475 1 to 2475 R294* tiling clone, available from FLJ,   2475/2475
(100 %)
3 diff
(99.9 %id)
DA524047 brain .e 2 to 558 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
AK307671 testis .f 1 to 2403 5 to 2407 exact tiling clone,   2407/2407
(100 %)
2 diff
(100.0 %id)
DB055864 testis .f 1 to 527 5 to 531   capped   530/537
(98 %)
3 diff
(99.5 %id)
DA408422 thalamus .g 1 to 571 2 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
BU943177 mixed (pool of 40 RNAs) .g 30 to 788 1 to 760       760/761
(99 %)
5 diff
(99.4 %id)
DB449930 testis .g 46 to 504 1 to 468       439/472
(93 %)
55 diff
(88.4 %id)
DA455222 tongue, tumor tissue .g 49 to 633 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA809774 brain .g 49 to 710 2 to 663   capped   662/662
(100 %)
1 diff
(99.9 %id)
DB062632 testis .g 50 to 596 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
TI_154154072   .g 54 to 690 81 to 717       637/649
(98 %)
4 diff
(99.4 %id)
DA005120   .g 60 to 625 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA659108   .g 60 to 617 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA784063 brain .g 62 to 657 2 to 600   capped   599/599
(100 %)
6 diff
(99.0 %id)
DR001445 fetal brain .g 62 to 778 3 to 719       717/719
(99 %)
7 diff
(99.1 %id)
BC058846 Prostate .g 65 to 2495 1 to 2431 exact available from MGC, AAA   2431/2432
(99 %)
4 diff
(99.9 %id)
DA743537   .g 67 to 578 2 to 514   capped   513/513
(100 %)
3 diff
(99.5 %id)
DB137084 thymus .g 67 to 615 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA642253 Liver .g 68 to 646 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA318958 hippocampus .g 70 to 722 2 to 654   capped   653/653
(100 %)
1 diff
(99.9 %id)
DA461888 tongue, tumor tissue .g 70 to 568 2 to 500   capped   499/499
(100 %)
0 diff
(100 %id)
DA820038   .g 70 to 651 2 to 583   capped   582/584
(99 %)
1 diff
(99.9 %id)
DA951837 Spleen .g 70 to 623 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DB097809 testis .g 70 to 651 2 to 583   capped   582/584
(99 %)
2 diff
(99.7 %id)
DB129797 thymus .g 70 to 623 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
BG773242 testis .g 71 to 811 2 to 742       741/766
(96 %)
10 diff
(98.7 %id)
DB221219 trachea .g 71 to 623 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA073166 cerebellum .g 74 to 632 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA303304 hippocampus .g 74 to 658 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
BG433938 Kidney .g 74 to 758 1 to 684       684/685
(99 %)
9 diff
(98.7 %id)
DA626716 Kidney .g 74 to 635 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA707383   .g 74 to 642 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB013103 esophageal, tumor tissue .g 74 to 656 2 to 584   capped   583/583
(100 %)
4 diff
(99.4 %id)
TI_2194647044   .g 89 to 961 135 to 1004     Submitted on the opposite strand 870/1009
(86 %)
20 diff
(98.1 %id)
BC144118 Brain, cerebellum, PCR rescued clones .g 89 to 3503 1 to 3415 exact tiling clone,   3415/3415
(100 %)
0 diff
(100 %id)
TI_1752771876   .g 90 to 725 131 to 766     Submitted on the opposite strand 636/766
(83 %)
9 diff
(98.9 %id)
AA356202   .g 107 to 403 1 to 298       298/302
(98 %)
4 diff
(98.7 %id)
TI_2194643308   .g 1215 to 2068 10 to 859       850/884
(96 %)
30 diff
(96.7 %id)
TI_2194643314   .g 1352 to 2222 9 to 882       874/887
(98 %)
12 diff
(98.7 %id)
TI_2194642850   .g 1376 to 2365 1 to 990       990/1013
(97 %)
26 diff
(97.5 %id)
AW370221 breast .g 1518 to 2017 504 to 1       504/504
(100 %)
18 diff
(96.5 %id)
TI_2194642852   .g 1691 to 2387 31 to 731       701/731
(95 %)
16 diff
(97.9 %id)
BM509221 insulinoma, Pancreas .g 1792 to 2370 591 to 14   AAA   578/578
(100 %)
7 diff
(98.8 %id)
CF593323 Human Placenta, placenta .h 1 to 754 29 to 783   tiling clone,   755/783
(96 %)
10 diff
(98.8 %id)
DA615913   .h 21 to 602 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA262575 caudate nucleus .h 25 to 605 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA490360 brain .h 25 to 555 2 to 534   capped   533/533
(100 %)
2 diff
(99.7 %id)
DA706607   .h 25 to 585 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
DA886633   .h 25 to 565 2 to 542   capped   541/548
(98 %)
2 diff
(99.7 %id)
DA010380 adrenal gland .h 34 to 585 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA692622   .h 36 to 591 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
TI_2194645342   .h 40 to 1065 47 to 1067 S253Q A254Q A255L S256L I257L ... tiling clone,   1021/1239
(82 %)
14 diff
(98.9 %id)
DB027574 testis .h 152 to 736 2 to 586   capped   585/585
(100 %)
2 diff
(99.7 %id)
DC387008   .i 1 to 570 1 to 570   tiling clone,   570/570
(100 %)
1 diff
(99.9 %id)
DA679996   .i 507 to 1074 2 to 569   tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
DW429633 Liver .j 1 to 383 17 to 399   tiling clone,   383/399
(95 %)
6 diff
(98.5 %id)
CN399508 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .j 133 to 711 9 to 587   tiling clone,   579/587
(98 %)
6 diff
(99.0 %id)
BE009604 breast_normal .j 508 to 800 1 to 295       295/305
(96 %)
7 diff
(97.8 %id)
BE092270 breast .j 638 to 1006 376 to 6     Submitted on the opposite strand 371/376
(98 %)
0 diff
(100 %id)
AL602897 human skeletal muscle .j 643 to 1145 1 to 503   tiling clone,   503/503
(100 %)
0 diff
(100 %id)
BG535912 lung .j 749 to 1180 1 to 433       433/433
(100 %)
7 diff
(98.4 %id)
CA946950 Pancreas, Purified pancreatic islet .j 848 to 1235 1 to 388   fully sequenced,   388/388
(100 %)
2 diff
(99.5 %id)
BE832121 marrow .j 1072 to 1295 1 to 222       222/248
(89 %)
15 diff
(94.0 %id)
BE832120 marrow .j 1075 to 1292 20 to 232   tiling clone,   213/232
(91 %)
6 diff
(97.5 %id)
CA946681 Pancreas, Purified pancreatic islet .j 1205 to 1584 380 to 1   tiling clone, fully sequenced,   380/380
(100 %)
0 diff
(100 %id)
AW975289   .j 1264 to 1877 615 to 2     Submitted on the opposite strand 614/618
(99 %)
5 diff
(99.2 %id)
BU169175 ductal carcinoma, cell line, Pancreas .j 1312 to 1990 697 to 18 L28W D171R E172* tiling clone, AAA Submitted on the opposite strand 680/935
(72 %)
8 diff
(99.2 %id)
N71529 cochlea, ear .j 1365 to 1538 1 to 174   fully sequenced,   174/174
(100 %)
0 diff
(100 %id)
BG433383 Kidney .j 1385 to 1944 1 to 561   tiling clone,   561/561
(100 %)
1 diff
(99.9 %id)
N22162 cochlea, ear .j 1508 to 1893 388 to 1   fully sequenced,   388/388
(100 %)
1 diff
(99.8 %id)
AI800436 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .k 1 to 480 480 to 1   tiling clone,   480/480
(100 %)
10 diff
(98.0 %id)
AI800456 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .k 19 to 480 461 to 1       461/461
(100 %)
12 diff
(97.4 %id)
AA640713   .k 181 to 494 1 to 316   tiling clone,   316/330
(95 %)
14 diff
(95.8 %id)
TI_149305035   .k 300 to 1111 894 to 93   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 802/964
(83 %)
21 diff
(97.9 %id)
BM978518 lung, Primary Lung Epithelial Cells .k 417 to 1117 697 to 2 exact tiling clone,   696/697
(99 %)
7 diff
(99.0 %id)
FN077718 breast carcinoma .k 596 to 660 1 to 65       65/66
(98 %)
4 diff
(94.0 %id)
DB222643 trachea .l 1 to 551 2 to 553 C40L N41Q Y43L V44C M45N ... tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
DB250953 uterus .m 1 to 568 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
DA063472 cerebellum .m 396 to 962 2 to 568   tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
BQ130228 insulinoma, Pancreas .m 1057 to 1615 8 to 566   tiling clone,   559/566
(98 %)
6 diff
(99.0 %id)
BE972559 testis .m 1096 to 1507 1 to 416       416/419
(99 %)
7 diff
(98.4 %id)
DB351096 uterus .m 1476 to 2002 528 to 1   tiling clone,   528/528
(100 %)
1 diff
(99.9 %id)
DN915179   .n 1 to 459 7 to 465 exact tiling clone,   465/465
(100 %)
4 diff
(99.2 %id)
DA990058 synovial membrane tissue from rheumatioidarthritis .o 1 to 551 2 to 552   tiling clone, capped   551/551
(100 %)
0 diff
(100 %id)
DB139211 thymus .o 21 to 585 2 to 566 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
CD359117 testis .o 80 to 576 9 to 508       500/1219
(41 %)
33 diff
(97.3 %id)
AV733438 pheochromocytoma .p 1 to 625 1 to 621   tiling clone,   621/629
(98 %)
17 diff
(97.3 %id)
BU781975 insulinoma, Pancreas .p 548 to 1155 1 to 608 exact tiling clone,   608/608
(100 %)
5 diff
(99.2 %id)
BQ574633 Chondrosarcoma Grade II, Left Pelvis .p 583 to 1325 760 to 19 exact AAA   742/742
(100 %)
4 diff
(99.5 %id)
CX784470 human embryonic stem cells .p 584 to 1365 1 to 782 exact tiling clone,   782/782
(100 %)
0 diff
(100 %id)
BG168956 hypernephroma, cell line, Kidney .p 602 to 1316 1 to 711 exact     711/799
(88 %)
19 diff
(97.7 %id)
BQ426020 melanotic melanoma, skin .p 608 to 1328 1 to 723 T32N D33R E34* AAA   723/723
(100 %)
3 diff
(99.6 %id)
TI_149271023   .p 629 to 1318 803 to 116 S6A L7S L8C Q9K K10N ... AAA   688/960
(71 %)
17 diff
(98.3 %id)
TI_149289446   .p 651 to 1328 777 to 100 exact AAA   678/678
(100 %)
0 diff
(100 %id)
BU681608 lung .p 672 to 1328 675 to 19 exact AAA   657/657
(100 %)
0 diff
(100 %id)
BM996129 lung, Metastatic Chondrosarcoma .p 675 to 1318 662 to 19   AAA   644/644
(100 %)
1 diff
(99.9 %id)
TI_2194642859   .p 698 to 1123 1 to 426       426/642
(66 %)
5 diff
(99.3 %id)
TI_1752768546   .p 698 to 1123 1 to 426       426/603
(70 %)
6 diff
(99.1 %id)
TI_1607544517   .p 708 to 1123 10 to 424       415/890
(46 %)
7 diff
(99.3 %id)
BQ129975 insulinoma, Pancreas .p 722 to 1293 572 to 1       572/572
(100 %)
0 diff
(100 %id)
CK905784 insulinoma, Pancreas .p 723 to 1320 604 to 7       598/604
(99 %)
0 diff
(100 %id)
DA193998 amygdala .q 1 to 562 5 to 566 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
DA957146 Spleen .r 1 to 564 2 to 565 exact tiling clone, capped   564/564
(100 %)
0 diff
(100 %id)
BQ429403 testis .s-u 1 to 569 1 to 569 exact tiling clone,   569/783
(72 %)
2 diff
(99.8 %id)
DA887013   .t 1 to 557 10 to 567 exact tiling clone, capped   566/566
(100 %)
2 diff
(99.7 %id)
AL602005   .u-u 1 to 545 1 to 545 exact tiling clone,   545/545
(100 %)
11 diff
(98.0 %id)
DA483810 brain .u-u 46 to 556 2 to 511 I23S Q24K R25D Q26N tiling clone, capped   510/510
(100 %)
9 diff
(98.3 %id)
AL118861 amygdala .va-u 1 to 162 1 to 161 exact tiling clone,   161/161
(100 %)
2 diff
(98.8 %id)
AV733630 pheochromocytoma Gene CCAR1, variant not shown         Suspected internal deletion, this clone was ignored    
AV661300 corresponding non cancerous liver tissue Gene CCAR1, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand    
AV758959 bone marrow Gene CCAR1, variant not shown         Suspected internal deletion, this clone was ignored    
AK128100 testis Gene CCAR1, variant not shown       available from FLJ, This clone was ignored    
AK307550   Gene CCAR1, variant not shown         Suspected internal deletion, this clone was ignored    
TI_2194645695   Gene CCAR1, variant not shown         Submitted on the opposite strand    
TI_2194646319   Gene CCAR1, variant not shown         Submitted on the opposite strand    
TI_1752771768   Gene CCAR1, variant not shown         Submitted on the opposite strand    
AF086334   Gene CCAR1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AI741448 pooled Gene CCAR1, variant not shown         This clone was ignored    
BF438758 pooled Gene CCAR1, variant not shown         This clone was ignored    
BF108773 pooled Gene CCAR1, variant not shown         This clone was ignored    
TI_149308201   Gene CCAR1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
TI_154095723   Gene CCAR1, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s-u, .t, .u-u, .va-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI