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Gene CBX7andCOX5BL7TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
242 supporting clones for gene CBX7andCOX5BL7 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB477330 hippocampus .a 1 to 506 1 to 506   tiling clone,   506/506
(100 %)
1 diff
(99.9 %id)
AI124880 brain, pooled frontal lobe .a 17 to 387 1 to 371   tiling clone, Submitted on the opposite strand 371/371
(100 %)
0 diff
(100 %id)
NM_175709.3   .a 17 to 3980 1 to 3964   RefSeq,   3964/3964
(100 %)
0 diff
(100 %id)
BC051773 Peripheral Nervous System, sympathetictrunk .a 66 to 3967 1 to 3902   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 3902/3902
(100 %)
11 diff
(99.8 %id)
BQ722296 sympathetic trunk .a 68 to 599 1 to 541       541/1273
(42 %)
19 diff
(98.6 %id)
TI_1948211056   .a 104 to 665 132 to 693   AAA   562/1396
(40 %)
20 diff
(98.6 %id)
TI_1948211337   .a 104 to 843 138 to 883       746/1343
(55 %)
44 diff
(96.8 %id)
TI_1948211903   .a 104 to 622 132 to 650       519/1376
(37 %)
15 diff
(99.0 %id)
EL734583 mixed .a 106 to 767 1 to 662       662/677
(97 %)
10 diff
(98.6 %id)
BU584966 Prostate .a 431 to 932 512 to 11       502/512
(98 %)
0 diff
(100 %id)
BU585027 brain .a 482 to 1044 1 to 568       568/571
(99 %)
17 diff
(97.1 %id)
AA323342 brain, cerebellum .a 644 to 931 1 to 286       286/286
(100 %)
2 diff
(99.4 %id)
BU584748 skin .a 645 to 965 323 to 3       321/323
(99 %)
0 diff
(100 %id)
BU584749 skin .a 645 to 960 315 to 1       315/315
(100 %)
8 diff
(97.5 %id)
BM806014 brain, hippocampus .a 647 to 1145 1 to 500   tiling clone,   500/1002
(49 %)
11 diff
(99.0 %id)
BU584747 skin .a 653 to 966 1 to 314       314/314
(100 %)
0 diff
(100 %id)
BU584877 uterus .b 1 to 328 1 to 331   tiling clone,   331/331
(100 %)
3 diff
(99.1 %id)
DB475343 hippocampus .b 99 to 570 1 to 472   tiling clone,   472/472
(100 %)
1 diff
(99.8 %id)
BQ721240 sympathetic trunk .c 1 to 739 1 to 751 G48X Q111X A127D D128A A129D ... tiling clone,   754/974
(77 %)
25 diff
(97.5 %id)
DQ064603   .d 1 to 477 1 to 477 I16F R63G L122P tiling clone,   477/477
(100 %)
3 diff
(99.4 %id)
BU584750 adrenal tumor .e 1 to 526 1 to 529 G13V P18A A20V R21P P22C ... tiling clone,   529/529
(100 %)
28 diff
(94.8 %id)
AI671906 Kidney .e 133 to 626 494 to 2   tiling clone,   493/494
(99 %)
10 diff
(98.0 %id)
DB171120 kidney, tumor tissue .e 463 to 1048 2 to 587   tiling clone, capped   586/586
(100 %)
0 diff
(100 %id)
DB347299 kidney, tumor tissue .e 1732 to 2250 529 to 1   tiling clone,   529/529
(100 %)
11 diff
(98.0 %id)
AW608068 leiomios .f 1 to 445 246 to 690 K26E F72L tiling clone,   446/696
(64 %)
14 diff
(98.0 %id)
CN284185 embryonic stem cells, cell lines H1, H7, andH9 .g-u 1 to 654 1 to 654   tiling clone,   654/654
(100 %)
2 diff
(99.7 %id)
BX955362   .g-u 116 to 491 1 to 376       376/376
(100 %)
0 diff
(100 %id)
CO245379 Chondrosarcoma Lung Metastasis cell lines, lung .g-u 246 to 968 1 to 714       714/799
(89 %)
6 diff
(99.3 %id)
BQ937914 leiomyosarcoma, uterus .g-u 284 to 1188 1 to 907       907/907
(100 %)
7 diff
(99.3 %id)
AA325866 brain, cerebellum .g-u 287 to 569 1 to 283       283/283
(100 %)
3 diff
(99.0 %id)
CA393100 eye, RPE/choroid .g-u 300 to 617 1 to 321       321/321
(100 %)
11 diff
(96.6 %id)
BU943505 carcinoma, cell line, Prostate .g-u 301 to 1247 1 to 944       944/945
(99 %)
33 diff
(96.6 %id)
AA323303 brain, cerebellum .g-u 317 to 617 1 to 301       301/301
(100 %)
2 diff
(99.4 %id)
BG748804 eye, normal pigmented retinal epithelium .g-u 436 to 1215 1 to 774       774/774
(100 %)
30 diff
(96.2 %id)
BU145740 dorsal root ganglia .g-u 475 to 1308 1 to 839   tiling clone,   839/927
(90 %)
10 diff
(99.0 %id)
AA325533 brain, cerebellum .g-u 501 to 821 1 to 322       322/322
(100 %)
5 diff
(98.5 %id)
AW962173   .g-u 502 to 661 1 to 160       160/301
(53 %)
2 diff
(99.4 %id)
AA017490 eye, retina .g-u 594 to 1075 1 to 490       490/490
(100 %)
13 diff
(97.4 %id)
CO248263 Chondrosarcoma Lung Metastasis cell lines, lung .g-u 612 to 1271 8 to 663       656/820
(80 %)
26 diff
(96.9 %id)
BF527036 anaplastic oligodendroglioma with 1p/19qloss, brain .g-u 631 to 1043 178 to 605       540/780
(69 %)
19 diff
(97.6 %id)
BG897093 cartilage .g-u 666 to 977 87 to 398       312/329
(94 %)
6 diff
(98.2 %id)
CB106332 stomach .g-u 719 to 1039 1 to 321       321/321
(100 %)
1 diff
(99.7 %id)
BQ695012 adipose .g-u 727 to 1345 1 to 618       618/618
(100 %)
6 diff
(99.1 %id)
CU448085 epidermis .g-u 738 to 1106 14 to 382       369/396
(93 %)
12 diff
(97.0 %id)
AA322079 brain, cerebellum .g-u 965 to 1217 1 to 253       253/253
(100 %)
1 diff
(99.7 %id)
CD514981 White Matter .g-u 993 to 1858 26 to 898 W13X S66E G67W V68S R69A ...     873/1041
(83 %)
17 diff
(98.4 %id)
BC128418 PCR rescued clones .g-u 993 to 2742 11 to 1760 exact     1750/1765
(99 %)
13 diff
(99.3 %id)
AA322928 brain, cerebellum .g-u 1098 to 1332 1 to 236       236/236
(100 %)
5 diff
(97.9 %id)
CR594018 fetal brain .g-u 1148 to 3229 1 to 2082 exact tiling clone,   2082/2082
(100 %)
0 diff
(100 %id)
BX410886 brain, fetal brain .g-u 1148 to 2039 1 to 887 S28P     887/890
(99 %)
8 diff
(99.2 %id)
BX410887 brain, fetal brain .g-u 1148 to 1995 1 to 845 S28P     845/845
(100 %)
17 diff
(98.0 %id)
BX442510 brain, fetal brain .g-u 1148 to 2083 1 to 933 S6F P20X S28P     933/994
(93 %)
14 diff
(98.6 %id)
BM796315 stomach .g-u 1270 to 1857 1 to 587 S66M     587/587
(100 %)
5 diff
(99.2 %id)
BI598346 brain, hypothalamus .g-u 1299 to 2177 1 to 883 exact     883/885
(99 %)
36 diff
(96.0 %id)
TI_45214838   .g-u 1302 to 2177 94 to 973 exact     880/975
(90 %)
36 diff
(96.4 %id)
DB484814 hypothalamus .g-u 1304 to 1741 1 to 433       433/433
(100 %)
11 diff
(97.5 %id)
DB489423 hypothalamus .g-u 1304 to 1778 1 to 478       478/478
(100 %)
21 diff
(95.7 %id)
DB500994 hypothalamus .g-u 1304 to 1792 1 to 489       489/489
(100 %)
4 diff
(99.2 %id)
BM050066 epithelioid carcinoma cell line, Pancreas .g-u 1316 to 2078 1 to 773 R69L P70A A71S S72K L73F ...     773/775
(99 %)
18 diff
(97.7 %id)
BG761945 melanotic melanoma, high MDR (cell line), skin .g-u 1322 to 2048 1 to 726 exact     726/730
(99 %)
5 diff
(99.4 %id)
CD722091 eye, lacrimal gland .g-u 1424 to 1996 1 to 573 exact     573/573
(100 %)
1 diff
(99.9 %id)
BM686464 eye, eye anterior segment .g-u 1555 to 2214 9 to 668       660/668
(98 %)
4 diff
(99.5 %id)
TI_153957343   .g-u 1555 to 2458 79 to 975       897/1022
(87 %)
16 diff
(98.5 %id)
CD244683 White Matter .g-u 1618 to 2376 25 to 792       768/969
(79 %)
25 diff
(97.5 %id)
BI765783 pooled colon, kidney, stomach .g-u 1622 to 2442 34 to 855       822/861
(95 %)
4 diff
(99.6 %id)
TI_57149246   .g-u 1622 to 2442 34 to 855       822/861
(95 %)
4 diff
(99.6 %id)
BF964079 nervous_normal .g-u 1635 to 2041 418 to 11       408/418
(97 %)
0 diff
(100 %id)
BE531175 adenocarcinoma, Pancreas .g-u 1637 to 2499 35 to 889       855/908
(94 %)
6 diff
(99.4 %id)
BF850822 lung_normal .g-u 1639 to 1946 309 to 1     Submitted on the opposite strand 309/309
(100 %)
5 diff
(98.4 %id)
BF954814 nervous_normal .g-u 1644 to 2041 409 to 12       398/409
(97 %)
0 diff
(100 %id)
AA324607 brain, cerebellum .g-u 1650 to 1876 1 to 227       227/228
(99 %)
2 diff
(99.2 %id)
BE531094 adenocarcinoma, Pancreas .g-u 1664 to 2237 1 to 574       574/574
(100 %)
3 diff
(99.5 %id)
BE615310 adenocarcinoma, Pancreas .g-u 1665 to 2493 1 to 821       821/921
(89 %)
32 diff
(96.6 %id)
BF749264 breast_normal .g-u 1695 to 2042 1 to 348       348/348
(100 %)
2 diff
(99.5 %id)
R56380 whole brain .g-u 1715 to 2196 1 to 491     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 491/524
(93 %)
17 diff
(96.8 %id)
N46624 multiple sclerosis lesions .g-u 1719 to 1831 1 to 112       112/112
(100 %)
1 diff
(99.2 %id)
CD516589 White Matter .g-u 1726 to 2488 1 to 775       775/970
(79 %)
20 diff
(98.0 %id)
BF849940 lung_normal .g-u 1748 to 2087 348 to 8     Submitted on the opposite strand 341/352
(96 %)
0 diff
(100 %id)
BF964036 nervous_normal .g-u 1763 to 2060 310 to 14       297/310
(95 %)
0 diff
(100 %id)
N34695 melanocyte .g-u 1779 to 2273 1 to 497       497/498
(99 %)
5 diff
(99.0 %id)
BF527071 anaplastic oligodendroglioma with 1p/19qloss, brain .g-u 1787 to 2504 15 to 724       710/724
(98 %)
6 diff
(99.2 %id)
BM925580 brain .g-u 1799 to 2667 14 to 887       874/1052
(83 %)
28 diff
(97.4 %id)
R59120 whole brain .g-u 1814 to 2205 1 to 392       392/392
(100 %)
0 diff
(100 %id)
BQ716949 sympathetic trunk .g-u 1815 to 2537 1 to 730       730/943
(77 %)
30 diff
(96.9 %id)
BX452241 brain, fetal brain .g-u 1841 to 2728 1 to 878       878/878
(100 %)
16 diff
(98.2 %id)
BM019965 astrocytoma grade IV, cell line, brain .g-u 1864 to 2542 1 to 678       678/681
(99 %)
15 diff
(97.8 %id)
TI_59390741   .g-u 1865 to 2542 105 to 781       677/680
(99 %)
15 diff
(97.8 %id)
BQ346963 nervous_tumor .g-u 1869 to 2013 1 to 145       145/145
(100 %)
9 diff
(93.8 %id)
BQ346988 nervous_tumor .g-u 1869 to 2013 1 to 145       145/145
(100 %)
9 diff
(93.8 %id)
BF826729 head_normal .g-u 1877 to 2209 343 to 10     Submitted on the opposite strand 334/343
(97 %)
0 diff
(100 %id)
BF349035 denis_drash .g-u 1912 to 2210 12 to 307       296/307
(96 %)
6 diff
(98.1 %id)
BQ315019 denis_drash .g-u 1912 to 2210 12 to 307       296/307
(96 %)
6 diff
(98.1 %id)
CD673396 eye, lens .g-u 1981 to 2565 1 to 585     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 585/585
(100 %)
5 diff
(99.2 %id)
CD673577 eye, lens .g-u 1981 to 2485 1 to 505     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 505/505
(100 %)
15 diff
(97.1 %id)
CR985901 T-Lymphocytes .g-u 2046 to 2493 5 to 454       450/455
(98 %)
5 diff
(99.0 %id)
BM700608 eye, lens .g-u 2055 to 2630 1 to 576       576/576
(100 %)
0 diff
(100 %id)
AV683253 hepatocellular carcinoma .g-u 2073 to 2466 1 to 390       390/391
(99 %)
10 diff
(97.5 %id)
BM821734 stomach .g-u 2084 to 2373 1 to 290       290/290
(100 %)
7 diff
(97.6 %id)
BM314056 insulinoma, Pancreas .g-u 2116 to 2567 1 to 452       452/452
(100 %)
9 diff
(98.1 %id)
BM875738 insulinoma, Pancreas .g-u 2116 to 2585 1 to 470       470/470
(100 %)
9 diff
(98.1 %id)
CK824008 insulinoma, Pancreas .g-u 2116 to 2631 1 to 516       516/516
(100 %)
11 diff
(97.9 %id)
BU071625 insulinoma, Pancreas .g-u 2116 to 2582 1 to 467     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 467/467
(100 %)
9 diff
(98.1 %id)
BU789930 insulinoma, Pancreas .g-u 2116 to 2592 1 to 477     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 477/477
(100 %)
9 diff
(98.2 %id)
AA322394 brain, cerebellum .g-u 2155 to 2404 1 to 250       250/250
(100 %)
8 diff
(96.8 %id)
W67500 heart .g-u 2175 to 2632 1 to 458       458/459
(99 %)
10 diff
(97.9 %id)
AA465642 germinal center B cell .g-u 2185 to 2582 1 to 398     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 398/399
(99 %)
4 diff
(99.0 %id)
CD673122 eye, Iris .g-u 2189 to 2691 1 to 503       503/503
(100 %)
0 diff
(100 %id)
Z42834 brain, total brain .g-u 2195 to 2538 1 to 344       344/344
(100 %)
1 diff
(99.8 %id)
F07962 brain, total brain .g-u 2195 to 2485 1 to 291       291/291
(100 %)
0 diff
(100 %id)
T33111 brain .g-u 2195 to 2572 1 to 378       378/378
(100 %)
0 diff
(100 %id)
BM693688 eye, lens .g-u 2222 to 2729 1 to 508       508/508
(100 %)
3 diff
(99.5 %id)
BM727061 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g-u 2229 to 2717 1 to 489   fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 489/489
(100 %)
3 diff
(99.4 %id)
T30661 eye .g-u 2236 to 2619 1 to 387       387/389
(99 %)
8 diff
(98.0 %id)
AW964381   .g-u 2237 to 2737 1 to 502       502/540
(92 %)
9 diff
(98.4 %id)
C04542 heart .g-u 2247 to 2557 30 to 342       313/342
(91 %)
6 diff
(98.3 %id)
BQ639167 eye, retina .g-u 2267 to 2728 1 to 462       462/462
(100 %)
0 diff
(100 %id)
CF456349 peripheral nervous system .g-u 2306 to 2738 31 to 464       434/464
(93 %)
0 diff
(100 %id)
BG341570 B-cells, primary B-cells from tonsils (cell line) .g-u 2313 to 2940 1 to 627       627/630
(99 %)
13 diff
(98.0 %id)
BG007409 placenta_normal .g-u 2338 to 2775 438 to 1       438/458
(95 %)
4 diff
(99.2 %id)
BM556079 duodenal adenocarcinoma, cell line, small intestine .g-u 2344 to 2741 13 to 409       397/1277
(31 %)
4 diff
(99.7 %id)
BM700175 eye, lens .g-u 2345 to 2706 1 to 362   fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 362/362
(100 %)
1 diff
(99.8 %id)
BM700864 eye, human retina .g-u 2350 to 2612 1 to 264       264/264
(100 %)
3 diff
(98.9 %id)
BF948152 nervous_normal .g-u 2353 to 2664 18 to 327       310/334
(92 %)
9 diff
(97.4 %id)
BM693900 eye, RPE and Choroid .g-u 2369 to 2728 1 to 360       360/360
(100 %)
1 diff
(99.8 %id)
BM704751 eye, RPE and Choroid .g-u 2369 to 2739 1 to 371       371/371
(100 %)
1 diff
(99.8 %id)
BX410885 brain, fetal brain .g-u 2398 to 3229 819 to 1       819/875
(93 %)
18 diff
(98.0 %id)
BM697129 eye, lens .g-u 2415 to 2739 1 to 325     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 325/325
(100 %)
0 diff
(100 %id)
BF944325 nervous_normal .g-u 2423 to 2618 14 to 209       196/209
(93 %)
6 diff
(97.2 %id)
TI_149301494   .g-u 2461 to 3284 874 to 55   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 820/962
(85 %)
12 diff
(98.8 %id)
TI_154110477   .g-u 2461 to 3284 897 to 84   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 814/935
(87 %)
5 diff
(99.5 %id)
BM142045 Islets of Langerhans, Pancreas .g-u 2468 to 2730 1 to 263     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 263/263
(100 %)
0 diff
(100 %id)
AW204638   .g-u 2479 to 2858 391 to 12   AAA Possibly primed on the genome, locally A rich (31/31 A in genome downstream of last aligned base) 380/380
(100 %)
1 diff
(99.8 %id)
TI_154120999   .g-u 2496 to 3284 853 to 73   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 781/955
(81 %)
18 diff
(98.2 %id)
BX455610 brain, fetal brain .g-u 2514 to 3278 763 to 1       763/900
(84 %)
22 diff
(97.6 %id)
CU456126 epidermis .g-u 2517 to 3253 753 to 17     Submitted on the opposite strand 737/753
(97 %)
0 diff
(100 %id)
TI_151716869   .g-u 2534 to 3284 867 to 108   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 760/918
(82 %)
11 diff
(98.9 %id)
TI_154097875   .g-u 2559 to 3293 838 to 111   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 728/761
(95 %)
15 diff
(98.1 %id)
BM716080 eye, Retina Foveal and Macular .g-u 2560 to 3248 1 to 689       689/689
(100 %)
0 diff
(100 %id)
BM697172 eye, lens .g-u 2561 to 2739 1 to 179     Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 179/179
(100 %)
0 diff
(100 %id)
BM729016 eye, fetal eye .g-u 2567 to 2721 1 to 155   fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 155/155
(100 %)
0 diff
(100 %id)
H43292 breast .g-u 2581 to 2961 1 to 383   fully sequenced,   383/383
(100 %)
11 diff
(97.2 %id)
EC490593 Prostate .g-u 2600 to 2683 1 to 84       84/92
(91 %)
2 diff
(97.9 %id)
N77162 multiple sclerosis lesions .g-u 2604 to 2770 1 to 166       166/166
(100 %)
6 diff
(96.4 %id)
BF446775 carcinoid, lung .g-u 2614 to 2855 242 to 1       242/242
(100 %)
1 diff
(99.6 %id)
BU685171 lung, Primary Lung Cystic Fibrosis EpithelialCells .g-u 2622 to 3284 681 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 663/663
(100 %)
1 diff
(99.9 %id)
CA312553 Human Lung Epithelial cells, lung .g-u 2622 to 3284 681 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 663/663
(100 %)
0 diff
(100 %id)
CA438494 lung, Metastatic Chondrosarcoma .g-u 2625 to 3297 677 to 6       672/679
(98 %)
0 diff
(100 %id)
BU608229 Human Lung Epithelial cells, lung .g-u 2627 to 3284 676 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 658/658
(100 %)
0 diff
(100 %id)
BM792693 Ascites, stomach .g-u 2631 to 2739 1 to 109       109/109
(100 %)
1 diff
(99.1 %id)
CA428331 Bone, Subchondral Bone .g-u 2631 to 3284 671 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 653/656
(99 %)
1 diff
(99.9 %id)
BU621511 cell lines, Chondrosarcoma .g-u 2633 to 3284 669 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 651/651
(100 %)
1 diff
(99.9 %id)
BU730316 eye, RPE and Choroid .g-u 2644 to 3297 659 to 6       654/659
(99 %)
0 diff
(100 %id)
BU584956 ovary .g-u 2648 to 3266 618 to 1       618/618
(100 %)
4 diff
(99.4 %id)
BM670181 eye, lens .g-u 2676 to 3284 627 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 609/609
(100 %)
2 diff
(99.7 %id)
BM681959 eye, fetal eye .g-u 2691 to 3284 611 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 593/593
(100 %)
1 diff
(99.9 %id)
BU071390 insulinoma, Pancreas .g-u 2707 to 3284 594 to 16   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 579/579
(100 %)
1 diff
(99.9 %id)
BU584993 nose .g-u 2708 to 3271 1 to 564       564/564
(100 %)
0 diff
(100 %id)
BU789658 insulinoma, Pancreas .g-u 2708 to 3284 594 to 16   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 579/579
(100 %)
1 diff
(99.9 %id)
BU741304 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g-u 2708 to 3284 595 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 577/577
(100 %)
0 diff
(100 %id)
BU621873 Bone, Subchondral Bone .g-u 2708 to 3284 600 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 582/582
(100 %)
4 diff
(99.4 %id)
CD673395 eye, lens .g-u 2725 to 3284 577 to 17   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 561/561
(100 %)
2 diff
(99.7 %id)
BQ016498 lung, Metastatic Chondrosarcoma .g-u 2727 to 3297 576 to 6   tiling clone,   571/576
(99 %)
0 diff
(100 %id)
BM875486 insulinoma, Pancreas .g-u 2732 to 3284 570 to 16   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 555/555
(100 %)
2 diff
(99.7 %id)
BQ446454 Knee, Osteoarthritic Cartilage .g-u 2732 to 3284 571 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 553/553
(100 %)
0 diff
(100 %id)
BE644965 pooled .g-u 2749 to 3283 535 to 1       535/535
(100 %)
1 diff
(99.9 %id)
BU075704 insulinoma, Pancreas .g-u 2763 to 3284 538 to 16   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 523/523
(100 %)
1 diff
(99.9 %id)
BU583992 Spinal cord .g-u 2764 to 3254 1 to 491       491/498
(98 %)
2 diff
(99.6 %id)
BU585127   .g-u 2765 to 3297 1 to 535       535/545
(98 %)
14 diff
(97.5 %id)
BU948147 insulinoma, Pancreas .g-u 2765 to 3283 520 to 1       520/520
(100 %)
1 diff
(99.9 %id)
CD673673 eye, lens .g-u 2770 to 3284 6 to 520   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 515/520
(99 %)
6 diff
(98.9 %id)
AA226536   .g-u 2772 to 3109 1 to 338       338/339
(99 %)
2 diff
(99.5 %id)
BM313782 insulinoma, Pancreas .g-u 2773 to 3284 528 to 16   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 513/513
(100 %)
1 diff
(99.9 %id)
CD673576 eye, lens .g-u 2779 to 3284 523 to 17   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 507/507
(100 %)
2 diff
(99.7 %id)
AA910364 Kidney .g-u 2781 to 3284 503 to 1       503/510
(98 %)
3 diff
(99.5 %id)
AV648364 corresponding non cancerous liver tissue .g-u 2788 to 3284 1 to 498   AAA Submitted on the opposite strand 498/498
(100 %)
1 diff
(99.8 %id)
BP395607 pancreatic islet .g-u 2791 to 3290 1 to 500     Submitted on the opposite strand 500/500
(100 %)
1 diff
(99.8 %id)
BM668111 eye, lens .g-u 2800 to 3284 504 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 486/486
(100 %)
2 diff
(99.6 %id)
BP396534 pancreatic islet .g-u 2803 to 3261 1 to 459     Submitted on the opposite strand 459/459
(100 %)
1 diff
(99.8 %id)
BI489987 pooled brain, lung, testis .g-u 2803 to 3284 1 to 482   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 482/482
(100 %)
0 diff
(100 %id)
CK824007 insulinoma, Pancreas .g-u 2803 to 3284 497 to 16   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 482/482
(100 %)
3 diff
(99.4 %id)
TI_43960765   .g-u 2803 to 3297 65 to 559   AAA   495/910
(54 %)
3 diff
(99.7 %id)
F21282 pectoral muscle (after mastectomy) .g-u 2808 to 3221 1 to 413       413/413
(100 %)
7 diff
(98.4 %id)
CD673672 eye, lens .g-u 2812 to 3284 491 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 473/473
(100 %)
2 diff
(99.6 %id)
AI809246 pooled .g-u 2816 to 3287 472 to 1       472/472
(100 %)
2 diff
(99.6 %id)
N47808 multiple sclerosis lesions .g-u 2821 to 3285 480 to 1       480/481
(99 %)
21 diff
(95.7 %id)
N53009 liver and spleen .g-u 2822 to 3286 467 to 1       467/477
(97 %)
8 diff
(98.4 %id)
AA836750 Kidney, kidney tumor .g-u 2823 to 3285 457 to 1       457/467
(97 %)
6 diff
(98.8 %id)
BU948754 Pancreas, Purified pancreatic islet .g-u 2823 to 3285 463 to 1       463/463
(100 %)
1 diff
(99.8 %id)
AI694152 carcinoid, lung .g-u 2824 to 3173 1 to 350     Submitted on the opposite strand 350/350
(100 %)
2 diff
(99.5 %id)
BF115228 fibrotheoma, ovary .g-u 2826 to 3290 465 to 1       465/465
(100 %)
3 diff
(99.4 %id)
BE348825 carcinoid, lung .g-u 2832 to 3255 1 to 424     Submitted on the opposite strand 424/424
(100 %)
11 diff
(97.5 %id)
AA829730 carcinoid, lung .g-u 2834 to 3288 1 to 454     Submitted on the opposite strand 454/455
(99 %)
4 diff
(99.2 %id)
AA971739 carcinoid, lung .g-u 2834 to 3253 1 to 420     Submitted on the opposite strand 420/420
(100 %)
3 diff
(99.3 %id)
AI458383 carcinoid, lung .g-u 2834 to 3184 1 to 351     Submitted on the opposite strand 351/351
(100 %)
1 diff
(99.8 %id)
BE467282 carcinoid, lung .g-u 2834 to 3155 1 to 322     Submitted on the opposite strand 322/322
(100 %)
2 diff
(99.4 %id)
N27413 melanocyte .g-u 2835 to 3284 451 to 1       451/452
(99 %)
8 diff
(98.3 %id)
DB540176 hippocampus .g-u 2838 to 3293 1 to 455     Submitted on the opposite strand 455/455
(100 %)
8 diff
(98.3 %id)
BM670832 eye, lens .g-u 2841 to 3297 462 to 6       457/462
(98 %)
0 diff
(100 %id)
DB558932 hypothalamus .g-u 2844 to 3293 1 to 450     Submitted on the opposite strand 450/451
(99 %)
5 diff
(98.9 %id)
DB553860 hypothalamus .g-u 2847 to 3293 1 to 446     Submitted on the opposite strand 446/447
(99 %)
15 diff
(96.7 %id)
EL952050 eyeball .g-u 2848 to 3284 1 to 438   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 438/438
(100 %)
3 diff
(99.4 %id)
DB549427 hippocampus .g-u 2851 to 3293 1 to 443     Submitted on the opposite strand 443/443
(100 %)
4 diff
(99.1 %id)
W67501 heart .g-u 2858 to 3285 437 to 1       437/444
(98 %)
11 diff
(97.6 %id)
AI801368 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g-u 2860 to 3285 427 to 1       427/427
(100 %)
1 diff
(99.8 %id)
N41056 multiple sclerosis lesions .g-u 2863 to 3284 450 to 30   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 421/421
(100 %)
1 diff
(99.8 %id)
BE830573 marrow .g-u 2868 to 2977 22 to 130       109/130
(83 %)
6 diff
(95.4 %id)
BE830581 marrow .g-u 2869 to 3098 14 to 242       229/268
(85 %)
5 diff
(98.2 %id)
BE830583 marrow .g-u 2869 to 3098 16 to 244       229/258
(88 %)
5 diff
(98.1 %id)
AI017351 Kidney .g-u 2870 to 3285 416 to 1       416/416
(100 %)
3 diff
(99.3 %id)
AI742325 pooled .g-u 2870 to 3284 427 to 13   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 415/415
(100 %)
1 diff
(99.8 %id)
CV371912 colon_normal .g-u 2871 to 3092 4 to 218       215/228
(94 %)
13 diff
(94.3 %id)
BP420333 small intestine .g-u 2871 to 3288 1 to 418     Submitted on the opposite strand 418/418
(100 %)
1 diff
(99.8 %id)
BM141766 Islets of Langerhans, Pancreas .g-u 2871 to 3284 435 to 22   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 414/414
(100 %)
5 diff
(98.8 %id)
AI420241 Prostate .g-u 2874 to 3287 414 to 1       414/414
(100 %)
0 diff
(100 %id)
BU733773 eye, Retina Foveal and Macular .g-u 2874 to 3284 429 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 411/411
(100 %)
0 diff
(100 %id)
AA455261 germinal center B cell .g-u 2875 to 3284 427 to 18   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 410/410
(100 %)
0 diff
(100 %id)
BF222341 Prostate .g-u 2877 to 3285 409 to 1       409/409
(100 %)
0 diff
(100 %id)
AI130039 uterus .g-u 2879 to 3289 411 to 1       411/412
(99 %)
6 diff
(98.6 %id)
AA016246 eye, retina .g-u 2881 to 3284 412 to 1       412/413
(99 %)
12 diff
(97.1 %id)
AA938708 germinal center B cell .g-u 2881 to 3293 423 to 11   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 413/413
(100 %)
0 diff
(100 %id)
AA760722 germinal center B cell .g-u 2885 to 3269 385 to 1       385/385
(100 %)
1 diff
(99.8 %id)
N59351 multiple sclerosis lesions .g-u 2895 to 3272 378 to 1       378/380
(99 %)
8 diff
(97.9 %id)
BU730056 eye, Retina Foveal and Macular .g-u 2898 to 3284 405 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 387/387
(100 %)
1 diff
(99.8 %id)
BU584627 brain .g-u 2903 to 3279 1 to 379       379/379
(100 %)
2 diff
(99.5 %id)
EL950565 eyeball .g-u 2903 to 3293 49 to 438   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 390/438
(89 %)
6 diff
(98.7 %id)
AA771807 parathyroid gland, parathyroid tumor .g-u 2905 to 3292 389 to 2       388/389
(99 %)
0 diff
(100 %id)
BF941301 dorsal root ganglia .g-u 2906 to 3284 391 to 12   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 380/380
(100 %)
3 diff
(99.3 %id)
BU584121 colon .g-u 2911 to 3284 1 to 374   fully sequenced,   374/374
(100 %)
2 diff
(99.5 %id)
AI460007 brain, meningioma .g-u 2919 to 3293 376 to 1       376/376
(100 %)
5 diff
(98.7 %id)
H43293 breast .g-u 2931 to 3284 374 to 1   fully sequenced,   374/374
(100 %)
10 diff
(97.4 %id)
BM668077 eye, lens .g-u 2932 to 3284 371 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 353/353
(100 %)
1 diff
(99.8 %id)
Z41034 brain, total brain .g-u 2949 to 3284 336 to 1       336/336
(100 %)
0 diff
(100 %id)
BU584122 colon .g-u 2956 to 3252 297 to 1   fully sequenced,   297/297
(100 %)
0 diff
(100 %id)
BF447426 sympathetic trunk .g-u 2956 to 3286 331 to 1       331/331
(100 %)
0 diff
(100 %id)
BF447457 sympathetic trunk .g-u 2960 to 3291 332 to 1       332/332
(100 %)
0 diff
(100 %id)
AW515347 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .g-u 2962 to 3287 326 to 1       326/326
(100 %)
0 diff
(100 %id)
T03874   .g-u 2969 to 3287 319 to 1       319/319
(100 %)
0 diff
(100 %id)
F02360 brain, total brain .g-u 2971 to 3284 314 to 1       314/314
(100 %)
0 diff
(100 %id)
F02302 brain, total brain .g-u 2972 to 3284 313 to 1       313/313
(100 %)
0 diff
(100 %id)
N34898 multiple sclerosis lesions .g-u 2985 to 3284 300 to 1       300/302
(99 %)
2 diff
(99.4 %id)
AA948556 pooled .g-u 2997 to 3232 236 to 1       236/236
(100 %)
0 diff
(100 %id)
R56280 whole brain .g-u 3007 to 3284 290 to 11   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 280/283
(98 %)
2 diff
(99.3 %id)
AI678586 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g-u 3011 to 3285 275 to 1       275/275
(100 %)
0 diff
(100 %id)
BU584670 brain tumor .g-u 3016 to 3286 271 to 1     Submitted on the opposite strand 271/271
(100 %)
0 diff
(100 %id)
AA527386 colon .g-u 3025 to 3285 261 to 1       418/465
(89 %)
10 diff
(97.9 %id)
AA807824 normal prostate, Prostate .g-u 3036 to 3284 250 to 2       249/250
(99 %)
0 diff
(100 %id)
BU584184 Spinal cord .g-u 3048 to 3263 1 to 216       216/216
(100 %)
1 diff
(99.6 %id)
BU584172 lung .g-u 3054 to 3273 1 to 220       220/220
(100 %)
0 diff
(100 %id)
BU584870 Prostate .g-u 3092 to 3293 1 to 202   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 202/202
(100 %)
0 diff
(100 %id)
CB240593 Human Lung Epithelial cells, lung .g-u 3125 to 3267 143 to 1       143/205
(69 %)
0 diff
(100 %id)
BU584018 heart .g-u 3169 to 3272 1 to 107       107/107
(100 %)
3 diff
(97.2 %id)
EC444320 Prostate .g-u 3171 to 3284 115 to 2       114/115
(99 %)
0 diff
(100 %id)
DB137384 thymus .h 1 to 552 2 to 553   tiling clone, capped   552/552
(100 %)
0 diff
(100 %id)
AK090680 cerebellum .h 222 to 2810 1 to 2589   tiling clone, available from FLJ,   2589/2589
(100 %)
2 diff
(100.0 %id)
DA057715 cerebellum .h 223 to 688 2 to 467   capped   466/466
(100 %)
0 diff
(100 %id)
DA940849 Spleen .h 384 to 911 2 to 535   capped   534/534
(100 %)
4 diff
(99.3 %id)
BM671265 eye, optic nerve .h 1045 to 1609 583 to 19   tiling clone, AAA   565/565
(100 %)
5 diff
(99.2 %id)
TI_151771677   .h 1053 to 1608 109 to 664   AAA   556/556
(100 %)
13 diff
(97.7 %id)
BX502539 Liver .h 1421 to 2014 1 to 594       594/594
(100 %)
5 diff
(99.2 %id)
DB296728 cerebellum .h 2363 to 2810 449 to 1       449/449
(100 %)
2 diff
(99.6 %id)
DB295974 bladder .h 2518 to 2808 294 to 3       292/294
(99 %)
0 diff
(100 %id)
BM714006 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i-u 1 to 561 1 to 560 exact tiling clone, AAA Possibly primed on the genome, locally A rich (31/31 A in genome downstream of last aligned base) 560/560
(100 %)
2 diff
(99.7 %id)
BU584981 thyroid Gene CBX7andCOX5BL7, variant not shown         This clone was ignored    
AK124238 kidney, tumor tissue Gene CBX7andCOX5BL7, variant not shown       available from FLJ, This clone was ignored    
AK124408 bladder Gene CBX7andCOX5BL7, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
DB297575 cerebellum Gene CBX7andCOX5BL7, variant not shown         This clone was ignored    
DA072166 cerebellum Gene CBX7andCOX5BL7, variant not shown       capped This clone was ignored    
CR985001 T-Lymphocytes Gene CBX7andCOX5BL7, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI