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Gene CBLN2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
61 supporting clones for gene CBLN2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX460500 brain, fetal brain .a 1 to 326 1 to 325   tiling clone,   325/325
(100 %)
2 diff
(99.4 %id)
BX409761 brain, fetal brain .a 240 to 1113 1 to 875   tiling clone,   875/875
(100 %)
26 diff
(97.1 %id)
BX409762 brain, fetal brain .a 241 to 1153 1 to 910       910/910
(100 %)
21 diff
(97.7 %id)
BM987080 mixed .a 291 to 740 469 to 19   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 451/469
(96 %)
0 diff
(100 %id)
NM_182511.3   .a 291 to 3184 1 to 2894 exact RefSeq, AAA   2894/2894
(100 %)
0 diff
(100 %id)
AI815729 brain, frontal lobe .a 424 to 817 1 to 395       395/395
(100 %)
10 diff
(97.5 %id)
AY359074   .a 452 to 3184 1 to 2734 exact tiling clone, AAA   2734/2734
(100 %)
2 diff
(100.0 %id)
DN997294 breast cancer, Mammary gland (cancer tissue) .a 659 to 1166 6 to 513       508/513
(99 %)
1 diff
(99.9 %id)
AK291364 brain .a 779 to 2069 1 to 1291       1291/1291
(100 %)
2 diff
(99.9 %id)
DA497011 brain .a 780 to 1130 2 to 352   capped   351/351
(100 %)
2 diff
(99.5 %id)
DA771684 brain .a 780 to 1027 2 to 249   capped   248/248
(100 %)
1 diff
(99.6 %id)
DA774314 brain .a 785 to 1221 2 to 438   capped   437/437
(100 %)
3 diff
(99.4 %id)
BC035789 Brain, hippocampus .a 789 to 3184 1 to 2396   available from MGC, AAA   2396/2396
(100 %)
7 diff
(99.8 %id)
DA197508 brain .a 789 to 1351 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BM547683 brain, hippocampus .a 797 to 1607 20 to 853       847/1160
(73 %)
85 diff
(92.7 %id)
BQ216824 epithelioid carcinoma, Pancreas .a 804 to 1369 5 to 574       570/1032
(55 %)
36 diff
(96.6 %id)
AW163243 brain, frontal lobe .a 805 to 1400 1 to 596       594/596
(99 %)
7 diff
(98.9 %id)
BC110843 Brain, adult, 6 pooled whole brains .a 805 to 3180 1 to 2374   tiling clone, AAA   2374/2374
(100 %)
0 diff
(100 %id)
BM925872 brain .a 807 to 1305 55 to 556       502/1332
(37 %)
21 diff
(98.5 %id)
BU102039   .a 1135 to 1487 353 to 1       353/357
(98 %)
0 diff
(100 %id)
DA318927 hippocampus .a 1140 to 1783 2 to 645   capped   644/644
(100 %)
0 diff
(100 %id)
BU102038   .a 1185 to 1546 1 to 363       363/363
(100 %)
3 diff
(99.2 %id)
DA259963 caudate nucleus .a 1416 to 1975 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DA360969 subthalamic nucleus .a 1418 to 1873 2 to 458   capped   457/457
(100 %)
1 diff
(99.8 %id)
TI_57230369   .a 1444 to 2274 61 to 889       829/922
(89 %)
35 diff
(96.3 %id)
BI871154 adenocarcinoma, cell line, Liver .a 1445 to 2274 1 to 828       828/921
(89 %)
35 diff
(96.2 %id)
R60458 whole brain .a 1468 to 1943 1 to 492       492/492
(100 %)
25 diff
(95.0 %id)
AA332557 Embryo, 8 weeks .a 1754 to 2174 1 to 422       422/423
(99 %)
3 diff
(99.3 %id)
AW965432   .a 1755 to 2211 1 to 460       460/554
(83 %)
3 diff
(99.5 %id)
AA340432 brain .a 1764 to 2059 1 to 296       296/297
(99 %)
2 diff
(99.4 %id)
TI_57244654   .a 1804 to 2640 30 to 866       837/867
(96 %)
13 diff
(98.6 %id)
BI917364 brain .a 1805 to 2640 1 to 836       836/837
(99 %)
13 diff
(98.5 %id)
CB118124 brain .a 1827 to 2036 1 to 210       210/210
(100 %)
0 diff
(100 %id)
R36770 whole brain .a 1948 to 2314 1 to 372       372/372
(100 %)
5 diff
(98.7 %id)
R20045 whole brain .a 1948 to 2416 1 to 482       482/482
(100 %)
17 diff
(96.5 %id)
FN161087 breast carcinoma .a 2126 to 2233 1 to 114       114/115
(99 %)
7 diff
(94.0 %id)
TI_151771183   .a 2318 to 2809 90 to 581       492/496
(99 %)
2 diff
(99.6 %id)
R60224 whole brain .a 2823 to 3182 382 to 16   AAA   367/588
(62 %)
12 diff
(98.0 %id)
DA799333 brain .b 46 to 519 70 to 543 G37A tiling clone, capped   542/542
(100 %)
2 diff
(99.7 %id)
AW162063 brain, frontal lobe .c-u 1 to 339 1 to 339 exact tiling clone,   339/339
(100 %)
0 diff
(100 %id)
DA142350 alzheimer cortex .d 1 to 536 2 to 537 exact tiling clone, capped   536/536
(100 %)
0 diff
(100 %id)
AK125422 brain .e 1 to 3335 2 to 3336 exact tiling clone, available from FLJ,   3336/3336
(100 %)
4 diff
(99.9 %id)
DA789535 brain .e 1 to 579 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
BM723762 eye, fetal eye .e 631 to 1337 1 to 708       708/708
(100 %)
3 diff
(99.6 %id)
DA808542 brain .e 2551 to 3135 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
BX455129 brain, fetal brain .e 2611 to 3323 719 to 7       713/865
(82 %)
0 diff
(100 %id)
FN111966 breast carcinoma .e 2645 to 2752 105 to 1     Submitted on the opposite strand 105/109
(96 %)
8 diff
(92.7 %id)
BU734103 eye, Retina Foveal and Macular .e 2707 to 3337 649 to 19   tiling clone, AAA   631/631
(100 %)
0 diff
(100 %id)
TI_151756516   .e 2770 to 3335 649 to 79   AAA   571/928
(61 %)
76 diff
(91.9 %id)
DB326537 brain .e 2788 to 3335 548 to 1       548/548
(100 %)
0 diff
(100 %id)
BF361761 nervous_normal .e 2797 to 3038 246 to 4       243/248
(97 %)
0 diff
(100 %id)
BX092079 whole brain .e 2819 to 3335 534 to 17       518/534
(97 %)
0 diff
(100 %id)
T17432   .e 2868 to 3225 359 to 1       359/359
(100 %)
1 diff
(99.8 %id)
BE644911 pooled .e 2876 to 3335 468 to 9       460/468
(98 %)
0 diff
(100 %id)
H05818 whole brain .e 2993 to 3337 363 to 12   AAA   352/355
(99 %)
11 diff
(97.0 %id)
DB538950 hippocampus .e 3067 to 3337 1 to 272     Submitted on the opposite strand 272/272
(100 %)
10 diff
(96.4 %id)
DA791280 brain .h 1 to 630 2 to 632 D17N tiling clone, capped   631/631
(100 %)
2 diff
(99.7 %id)
AA933983 pooled .i 1 to 262 262 to 1 exact tiling clone,   262/262
(100 %)
0 diff
(100 %id)
CA396230 eye, RPE/choroid Gene CBLN2, variant not shown         This clone was ignored    
DA780041 brain Gene CBLN2, variant not shown       capped This clone was ignored    
DB327282.
matches multiple genes
brain Gene CBLN2, variant not shown         This clone was ignored, also hits gene skeesku    
DB327282.
matches multiple genes
brain Gene skeesku, variant not shown         This clone was ignored, also hits gene skeesku    
DA808572.
matches multiple genes
brain Gene CBLN2, variant not shown       capped This clone was ignored, also hits gene skeesku    
DA808572.
matches multiple genes
brain Gene skeesku, variant not shown       capped This clone was ignored, also hits gene skeesku    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e, .f, .g, .h, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI