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Gene CASC2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
65 supporting clones for gene CASC2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AL525776 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 1 to 549 1 to 549 C49X A50X D51X P52X A64H ... tiling clone,   549/549
(100 %)
7 diff
(98.8 %id)
BI545848 brain, hippocampus .b 1 to 457 1 to 449 A2G A6L A7R G8A A9L ... available from MGC,   447/720
(62 %)
16 diff
(97.8 %id)
NR_026940.1   .b 3 to 3169 1 to 3167   RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 3167/3167
(100 %)
0 diff
(100 %id)
AJ535621 mix of three normalized libraries (fetallung, testis, B-cell) .b 190 to 837 1 to 648   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 648/650
(99 %)
2 diff
(99.7 %id)
NR_026939.1   .c 1 to 3267 1 to 3267 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 3267/3267
(100 %)
0 diff
(100 %id)
BC036393 Brain, hippocampus .c 4 to 3267 6 to 3268   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 3263/3263
(100 %)
9 diff
(99.8 %id)
AY226450   .c 185 to 940 1 to 756       756/756
(100 %)
0 diff
(100 %id)
TI_1242417696   .c 277 to 895 55 to 673       619/1265
(48 %)
2 diff
(99.9 %id)
TI_1242417700   .c 277 to 895 682 to 64       619/1259
(49 %)
0 diff
(100 %id)
BC112306 Brain, cerebellum, PCR rescued clones .c 277 to 895 1 to 619       619/619
(100 %)
0 diff
(100 %id)
BC112308 Brain, cerebellum, PCR rescued clones .c 277 to 895 1 to 619       619/619
(100 %)
1 diff
(99.9 %id)
NR_026941.1   .d 1 to 2390 1 to 2390 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 2390/2390
(100 %)
0 diff
(100 %id)
CN430652 embryonic stem cells, DMSO-treated H9 cellline .d 165 to 620 1 to 456       456/456
(100 %)
5 diff
(99.0 %id)
BF979360 testis .d 179 to 899 1 to 716       716/878
(81 %)
18 diff
(98.0 %id)
BC112326 Brain, adult medulla .d 181 to 2052 1 to 1872   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 1872/1872
(100 %)
2 diff
(99.9 %id)
AY226451   .d 185 to 1845 1 to 1661       1661/1661
(100 %)
0 diff
(100 %id)
AJ344228 testis .d 188 to 2385 1 to 2198   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 2198/2202
(99 %)
2 diff
(100.0 %id)
DA751234   .d 189 to 757 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
BI826434 brain, medulla .d 193 to 875 1 to 681       681/681
(100 %)
2 diff
(99.8 %id)
TI_57173476   .d 193 to 875 30 to 710       681/710
(95 %)
6 diff
(99.2 %id)
DB449082 testis .d 199 to 637 1 to 441       441/441
(100 %)
3 diff
(99.4 %id)
BX097540 pooled germ cell tumors .d 211 to 612 1 to 402   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 402/402
(100 %)
0 diff
(100 %id)
AW374010 breast .d 296 to 899 605 to 4       602/605
(99 %)
1 diff
(99.9 %id)
AI360575 pooled germ cell tumors .d 380 to 618 258 to 20   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 239/239
(100 %)
2 diff
(99.2 %id)
BE072542 breast .d 682 to 899 220 to 3     Submitted on the opposite strand 218/220
(99 %)
0 diff
(100 %id)
AI217223   .d 1201 to 1492 295 to 4       292/295
(98 %)
0 diff
(100 %id)
AW195856 pooled .d 1591 to 2118 528 to 1       528/528
(100 %)
2 diff
(99.7 %id)
AW661839 pooled .d 1702 to 2117 425 to 11   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 415/415
(100 %)
1 diff
(99.8 %id)
BQ447915 Knee, Osteoarthritic Cartilage .d 1801 to 2390 610 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 592/592
(100 %)
7 diff
(98.9 %id)
AW197910 pooled .d 1865 to 2118 255 to 1       255/255
(100 %)
1 diff
(99.7 %id)
AI803697 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e-u 1 to 476 476 to 1 A4P R38A A49H R50V E51R ... tiling clone,   476/476
(100 %)
6 diff
(98.8 %id)
AI272815 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e-u 36 to 476 441 to 1   tiling clone,   441/441
(100 %)
2 diff
(99.6 %id)
AI660923 colon, colonic mucosa from 5 ulcerative colitispatients .e-u 161 to 406 247 to 1       247/247
(100 %)
2 diff
(99.2 %id)
DN994622 brain, whole brain .f 1 to 457 13 to 469 exact tiling clone,   461/469
(98 %)
6 diff
(98.8 %id)
DR002051 fetal brain .f 3 to 717 9 to 722 exact     714/722
(98 %)
2 diff
(99.8 %id)
DB228465 trachea .f 7 to 579 2 to 572 exact capped   571/571
(100 %)
2 diff
(99.7 %id)
BI827242 brain, medulla .f 30 to 749 1 to 718       718/720
(99 %)
10 diff
(98.7 %id)
TI_57174928   .f 30 to 749 29 to 746       718/748
(95 %)
16 diff
(97.9 %id)
CR741220 liver and spleen .f 280 to 1038 1 to 756   tiling clone,   756/758
(99 %)
4 diff
(99.5 %id)
BX369767 Neuroblastoma Cot 25-normalized .f 280 to 1070 8 to 794       787/794
(99 %)
17 diff
(97.9 %id)
R92526 liver and spleen .f 316 to 656 1 to 345       345/345
(100 %)
9 diff
(97.4 %id)
AL525727 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .f 433 to 1547 1104 to 1   tiling clone,   1104/1108
(99 %)
0 diff
(100 %id)
DA186542 amygdala .f 688 to 1224 2 to 540   capped   539/539
(100 %)
3 diff
(99.5 %id)
H21673 breast .f 1098 to 1483 1 to 394       394/479
(82 %)
12 diff
(97.5 %id)
AI018337 pooled .f 1191 to 1523 333 to 1   tiling clone,   333/404
(82 %)
3 diff
(99.3 %id)
AI018338 pooled .f 1191 to 1523 333 to 1       333/365
(91 %)
3 diff
(99.2 %id)
AW188121 pooled .f 1191 to 1523 333 to 1       333/400
(83 %)
2 diff
(99.5 %id)
R92436 liver and spleen .f 1203 to 1555 360 to 1   tiling clone,   360/387
(93 %)
8 diff
(98.0 %id)
AI701711 pooled .f 1225 to 1523 299 to 1       299/299
(100 %)
1 diff
(99.7 %id)
H21674 breast .f 1657 to 2018 369 to 1   tiling clone,   369/395
(93 %)
3 diff
(99.3 %id)
BU607570 Human Lung Epithelial cells, lung .f 1673 to 2455 800 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 782/782
(100 %)
2 diff
(99.8 %id)
CN292363 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 1796 to 2506 1 to 713       713/717
(99 %)
7 diff
(99.1 %id)
CR738998   .f 1976 to 2452 1 to 476       476/476
(100 %)
1 diff
(99.8 %id)
BE047598 brain, tumor, 5 pooled (see description) .f 2421 to 2874 1 to 454   tiling clone,   454/454
(100 %)
0 diff
(100 %id)
BQ005374 Chondrosarcoma, Left Pelvis .f 2699 to 3157 1 to 464   tiling clone, Submitted on the opposite strand 464/464
(100 %)
7 diff
(98.5 %id)
FN157525 breast carcinoma .f 3345 to 3425 1 to 80   tiling clone,   80/92
(86 %)
2 diff
(97.9 %id)
DB303165 amygdala .f 3356 to 3907 553 to 2   tiling clone,   552/553
(99 %)
0 diff
(100 %id)
AI768564 Kidney .f 3361 to 3499 1 to 138     Submitted on the opposite strand 138/138
(100 %)
3 diff
(97.9 %id)
TI_159724108   .f 3444 to 3911 151 to 618     Submitted on the opposite strand 468/1061
(44 %)
6 diff
(99.5 %id)
CA944773 Human Lung Epithelial cells, lung .f 3444 to 3907 41 to 504   AAA Submitted on the opposite strand 464/504
(92 %)
15 diff
(97.1 %id)
AI219353 placenta .f 3521 to 3912 405 to 13   tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 393/393
(100 %)
4 diff
(99.0 %id)
CD104116 Pooled-Skin .f 3628 to 3911 1 to 284   tiling clone,   284/387
(73 %)
2 diff
(99.5 %id)
AJ535622 mix of three normalized libraries (fetallung, testis, B-cell) .g 1 to 3231 2 to 3232 exact tiling clone,   3232/3232
(100 %)
2 diff
(100.0 %id)
AK055184 tongue, tumor tissue .g 1 to 3231 2 to 3232 exact available from FLJ,   3232/3232
(100 %)
6 diff
(99.9 %id)
DA435069 tongue, tumor tissue .g 1 to 483 2 to 484 exact capped   483/483
(100 %)
2 diff
(99.6 %id)
BX954122   .g 573 to 949 1 to 378       378/378
(100 %)
3 diff
(99.3 %id)
DB313334 tongue, tumor tissue .g 2701 to 3231 531 to 1       531/531
(100 %)
1 diff
(99.9 %id)
AJ535620 mix of three normalized libraries (fetallung, testis, B-cell) .h 1 to 1866 2 to 1867 exact tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 1867/1867
(100 %)
0 diff
(100 %id)
BX953869   .h 5 to 520 1 to 516 exact     516/516
(100 %)
1 diff
(99.9 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes D