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Gene CASC1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
107 supporting clones for gene CASC1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI462409 testis .a 1 to 789 5 to 793   tiling clone,   793/793
(100 %)
11 diff
(98.7 %id)
BC047415 testis .a 2 to 2541 1 to 2540 A679E tiling clone, available from MGC, AAA   2540/2540
(100 %)
1 diff
(100.0 %id)
NM_018272.3   .b 1 to 2501 2 to 2502 A639E RefSeq, AAA   2502/2502
(100 %)
1 diff
(100.0 %id)
DB453841 testis .b 3 to 496 1 to 494   tiling clone,   494/494
(100 %)
0 diff
(100 %id)
BI462993 testis .b 11 to 803 1 to 794   available from MGC,   794/800
(99 %)
9 diff
(98.9 %id)
DC399825 testis .b 11 to 556 1 to 547       547/547
(100 %)
1 diff
(99.9 %id)
DC395914 testis .b 12 to 620 1 to 609       609/609
(100 %)
2 diff
(99.7 %id)
BC031047 testis .b 16 to 2377 1 to 2361 N146I L147* tiling clone, available from MGC, AAA   2361/2361
(100 %)
3 diff
(99.9 %id)
AK093102 testis .b 30 to 2377 1 to 2347 R39S D463M A464L E465K G466V ... tiling clone, available from FLJ,   2347/2347
(100 %)
3 diff
(99.9 %id)
AX747924   .b 30 to 2377 1 to 2347 R39S D463M A464L E465K G466V ...     2347/2347
(100 %)
3 diff
(99.9 %id)
DB444596 testis .b 30 to 461 1 to 433       433/433
(100 %)
2 diff
(99.6 %id)
DB029756 testis .b 30 to 593 2 to 562   capped   565/561
(100 %)
6 diff
(99.0 %id)
DB024137 testis .b 31 to 571 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DB048171 testis .b 31 to 595 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DB042597 testis .b 65 to 627 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB336297 testis .b 1867 to 2377 513 to 1       513/513
(100 %)
3 diff
(99.5 %id)
BI459521 testis .c 1 to 798 5 to 811   tiling clone,   811/812
(99 %)
24 diff
(97.1 %id)
BI459776 testis .c 1 to 694 5 to 698       698/931
(74 %)
13 diff
(98.7 %id)
BC057795 testis .c 2 to 2361 1 to 2360 A633E tiling clone, available from MGC, AAA   2360/2360
(100 %)
2 diff
(100.0 %id)
NM_001082973.1   .c 2 to 2485 1 to 2484 A633E RefSeq, AAA   2484/2484
(100 %)
1 diff
(100.0 %id)
DC340589 thalamus .c 13 to 655 1 to 643       643/643
(100 %)
1 diff
(99.9 %id)
DB052853 testis .c 29 to 604 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
CD706815 normal nasopharynx .c 32 to 556 17 to 541       525/541
(97 %)
4 diff
(99.3 %id)
DB199286 trachea .c 33 to 617 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DB204574 trachea .c 33 to 597 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA582416 lung .c 35 to 586 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
DC398703 testis .c 36 to 607 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
DB208276 trachea .c 40 to 564 2 to 523   capped   522/535
(97 %)
5 diff
(99.1 %id)
AY423543   .c 84 to 2234 1 to 2151 A633E     2151/2151
(100 %)
1 diff
(100.0 %id)
BC117281 Colon, PCR rescued clones .c 167 to 2281 1 to 2115       2115/2115
(100 %)
1 diff
(100.0 %id)
BC117283 Colon, PCR rescued clones .c 167 to 2284 1 to 2118       2118/2118
(100 %)
1 diff
(100.0 %id)
TI_1320133089   .c 170 to 1054 246 to 1122     Submitted on the opposite strand 879/1250
(70 %)
10 diff
(99.2 %id)
TI_1320130847   .c 170 to 1301 53 to 1174       1124/1247
(90 %)
17 diff
(98.7 %id)
DB200180 trachea .c 232 to 805 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DB024493 testis .c 302 to 860 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
TI_1320134299   .c 493 to 1482 995 to 6       990/1082
(91 %)
20 diff
(98.2 %id)
DB030550 testis .c 507 to 1052 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
AK001783 ovarian cancer .c 577 to 2361 1 to 1784   tiling clone, available from FLJ,   1784/1784
(100 %)
2 diff
(99.9 %id)
AU133675 ovary, tumor tissue .c 578 to 1203 2 to 630   capped   629/629
(100 %)
11 diff
(98.3 %id)
BP371357 testis .c 890 to 1461 1 to 573       573/580
(98 %)
9 diff
(98.5 %id)
TI_1320134357   .c 922 to 1959 1043 to 5       1039/1052
(98 %)
27 diff
(97.5 %id)
TI_1320130855   .c 1169 to 2289 1174 to 58       1117/1231
(90 %)
20 diff
(98.4 %id)
TI_1320133075   .c 1305 to 2287 1120 to 136       985/1291
(76 %)
4 diff
(99.7 %id)
BX089472   .c 1419 to 2166 1 to 748       748/749
(99 %)
2 diff
(99.8 %id)
AA405364   .c 1419 to 1921 1 to 503       503/503
(100 %)
0 diff
(100 %id)
TI_149308519   .c 1703 to 2360 750 to 93   AAA   658/967
(68 %)
1 diff
(99.9 %id)
BM979714 lung, Primary Lung Epithelial Cells .c 1703 to 2360 676 to 19   AAA   658/674
(97 %)
1 diff
(99.9 %id)
DB519297 testis .c 1936 to 2361 1 to 425     Submitted on the opposite strand 425/425
(100 %)
3 diff
(99.3 %id)
DB516199 testis .c 1937 to 2361 1 to 425     Submitted on the opposite strand 425/425
(100 %)
1 diff
(99.8 %id)
DB509623 testis .c 1939 to 2361 1 to 423     Submitted on the opposite strand 423/423
(100 %)
1 diff
(99.8 %id)
BU678946 lung, Primary Lung Epithelial Cells .c 1942 to 2361 438 to 19   AAA   420/420
(100 %)
1 diff
(99.8 %id)
AI560169 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 1944 to 2361 418 to 1       418/418
(100 %)
1 diff
(99.8 %id)
DB509502 testis .c 1948 to 2361 1 to 414   AAA Submitted on the opposite strand 414/414
(100 %)
1 diff
(99.8 %id)
AU154909 ovary, tumor tissue .c 1953 to 2361 409 to 1       409/530
(77 %)
5 diff
(99.1 %id)
AA406219   .c 1967 to 2361 422 to 28   AAA   395/395
(100 %)
1 diff
(99.8 %id)
BE935574 marrow .c 1987 to 2208 224 to 2       223/239
(93 %)
0 diff
(100 %id)
AI564668 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 1998 to 2361 364 to 1       364/364
(100 %)
0 diff
(100 %id)
BE935549 marrow .c 2001 to 2225 37 to 261       225/271
(83 %)
6 diff
(97.8 %id)
BE935405 marrow .c 2015 to 2143 1 to 135       135/141
(95 %)
15 diff
(89.4 %id)
BM153410 leukopheresis .c 2437 to 2772 20 to 355   tiling clone, AAA   336/356
(94 %)
6 diff
(98.4 %id)
BE245749 leukopheresis .c 2449 to 2887 1 to 439       439/439
(100 %)
3 diff
(99.4 %id)
CF137352 lymph .c 2451 to 2864 40 to 453       414/453
(91 %)
0 diff
(100 %id)
TI_154166793   .c 2451 to 2883 112 to 544   tiling clone,   433/466
(92 %)
1 diff
(99.8 %id)
BQ212294 embryonal carcinoma, cell line, testis .c 2454 to 2974 1 to 527   tiling clone,   527/1034
(50 %)
24 diff
(97.7 %id)
AA283286   .c 2465 to 2651 1 to 185       185/223
(82 %)
11 diff
(95.1 %id)
AW868496 stomach_normal .c 2523 to 2752 9 to 234       226/234
(96 %)
6 diff
(97.5 %id)
NM_001082972.1   .d 1 to 2629 2 to 2630 exact RefSeq, AAA   2630/2630
(100 %)
0 diff
(100 %id)
DB444696 testis .d 54 to 487 1 to 432   tiling clone,   432/432
(100 %)
28 diff
(93.6 %id)
BG719968 testis .d 57 to 778 1 to 722       722/722
(100 %)
7 diff
(99.1 %id)
BC028415 testis .d 62 to 2505 6 to 2449 exact tiling clone, available from MGC, AAA   2444/2444
(100 %)
0 diff
(100 %id)
DB049054 testis .d 75 to 635 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
TI_159719281   .d 2102 to 2505 461 to 58   AAA   404/1029
(39 %)
0 diff
(100 %id)
CB852778 Human Lung Epithelial cells, lung .d 2102 to 2505 422 to 19   AAA   404/427
(94 %)
0 diff
(100 %id)
AK297998 lung .e 1 to 2142 5 to 2146 A574E tiling clone,   2146/2146
(100 %)
1 diff
(100.0 %id)
AK301763 testis .f 1 to 2003 6 to 1558 K83Y N85S E86A T87V F88T ... tiling clone, Suspected internal deletion 1558/1558
(100 %)
1 diff
(100.0 %id)
DC395145 testis .f 1 to 962 6 to 520     Suspected internal deletion 520/520
(100 %)
5 diff
(99.1 %id)
DC426721 testis .f 1745 to 2314 573 to 1   tiling clone, Suspected internal deletion 573/602
(95 %)
3 diff
(99.6 %id)
DB052435 testis .g 1 to 571 2 to 573   tiling clone, capped   572/572
(100 %)
2 diff
(99.7 %id)
AU134075 ovary, tumor tissue .g 493 to 1235 2 to 740   tiling clone, capped   739/739
(100 %)
7 diff
(99.1 %id)
AU155186 ovary, tumor tissue .g 1754 to 2289 541 to 1   tiling clone,   541/555
(97 %)
15 diff
(97.3 %id)
AK304602 uterus .h 1 to 2207 2 to 2208 I127T I386T tiling clone,   2208/2208
(100 %)
2 diff
(100.0 %id)
DB263770 uterus .h 1 to 599 2 to 601   capped   600/600
(100 %)
1 diff
(99.9 %id)
AV755113 pituitary tumor .h 69 to 659 1 to 584       584/593
(98 %)
4 diff
(99.4 %id)
AA293776   .i 1 to 414 1 to 414   tiling clone,   414/414
(100 %)
2 diff
(99.6 %id)
AA397943   .i 1 to 358 1 to 358   tiling clone,   358/358
(100 %)
2 diff
(99.5 %id)
AA421152   .i 1372 to 1861 492 to 3   tiling clone,   490/492
(99 %)
0 diff
(100 %id)
AA398350   .i 1441 to 1861 423 to 3       421/423
(99 %)
0 diff
(100 %id)
AK302235 testis .j 1 to 1626 1 to 1626 exact tiling clone,   1626/1626
(100 %)
0 diff
(100 %id)
DB033723 testis .k 1 to 599 2 to 601   tiling clone, capped   600/600
(100 %)
1 diff
(99.9 %id)
DB094527 testis .k 1 to 560 2 to 560   tiling clone, capped   559/559
(100 %)
2 diff
(99.7 %id)
AA398183   .k 564 to 966 1 to 403   tiling clone,   403/403
(100 %)
0 diff
(100 %id)
AA478119   .k 978 to 1091 125 to 12   tiling clone, AAA   114/114
(100 %)
0 diff
(100 %id)
BI560591 testis .l 1 to 745 1 to 748 E103G K104E L105I K106E F107H ... tiling clone,   748/864
(86 %)
15 diff
(98.3 %id)
TI_44349579   .l 5 to 745 163 to 906 E103G K104E L105I K106E F107H ...     744/1022
(72 %)
11 diff
(99.0 %id)
TI_44349900   .l 20 to 680 113 to 772       660/780
(84 %)
6 diff
(99.3 %id)
BI561991 testis .l 23 to 680 1 to 657       657/665
(98 %)
12 diff
(98.2 %id)
DA744078   .l 33 to 599 2 to 568   tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
DA753279   .m 1 to 568 2 to 569 T84A tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
CR743351 pooled .n 1 to 488 487 to 1   tiling clone, Submitted on the opposite strand 487/487
(100 %)
1 diff
(99.8 %id)
CD251191 brain, Pituitary .n 6 to 854 1 to 860   tiling clone,   860/862
(99 %)
17 diff
(98.1 %id)
DA570196 whole embryo, mainly head .n 382 to 1221 2 to 845   tiling clone, capped   844/849
(99 %)
17 diff
(98.0 %id)
TI_149279979   .n 1227 to 1915 745 to 61 F8C L18V S21Y A35E tiling clone, AAA   685/780
(87 %)
27 diff
(96.6 %id)
AU145251 whole embryo, mainly head .n 1508 to 2046 540 to 1   tiling clone,   540/554
(97 %)
8 diff
(98.6 %id)
AW006870 Kidney .n 1564 to 2047 487 to 3   tiling clone,   485/487
(99 %)
0 diff
(100 %id)
BG507120 lung .o-u 1 to 537 1 to 540   tiling clone,   540/540
(100 %)
5 diff
(99.1 %id)
AW440256 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .o-u 524 to 1023 495 to 1 exact tiling clone,   495/495
(100 %)
5 diff
(99.0 %id)
BG182988   .p 1 to 679 1 to 675 exact tiling clone,   675/771
(87 %)
38 diff
(95.1 %id)
DB033143 testis .q 1 to 582 2 to 583 exact tiling clone, capped   582/582
(100 %)
2 diff
(99.7 %id)
DB450736 testis .r 1 to 489 2 to 489 Y58* tiling clone,   489/489
(100 %)
2 diff
(99.6 %id)
BX089754 pooled .s-u 1 to 479 1 to 479 exact tiling clone, AAA   479/479
(100 %)
0 diff
(100 %id)
AA969007 pooled .s-u 34 to 476 453 to 11 G43F R44G S46L S47L Q48I ...     443/453
(97 %)
0 diff
(100 %id)
AA969166 pooled .s-u 53 to 482 430 to 1 exact     430/430
(100 %)
0 diff
(100 %id)
AA305322 colon .t-u 1 to 453 1 to 452 L20F S21L N22I I23* tiling clone,   452/452
(100 %)
2 diff
(99.6 %id)
AA837434 germinal center B cell .u-u 1 to 303 1 to 304 exact tiling clone,   304/304
(100 %)
1 diff
(99.7 %id)
DA582315 lung Gene CASC1, variant not shown       capped      
DB221048 trachea Gene CASC1, variant not shown       capped This clone was ignored    
DB349410 trachea Gene CASC1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o-u, .p, .q, .r, .s-u, .t-u, .u-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC