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Gene NOD2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
36 supporting clones for gene NOD2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF178930   .a 1 to 4485 1 to 4485 exact tiling clone,   4485/4485
(100 %)
0 diff
(100 %id)
AY187243   .a 1 to 985 1 to 985       985/985
(100 %)
1 diff
(99.9 %id)
NM_022162.1   .a 1 to 4485 1 to 4485 exact RefSeq,   4485/4485
(100 %)
0 diff
(100 %id)
AW845499 colon .a 452 to 637 188 to 5       184/189
(97 %)
0 diff
(100 %id)
BX380580 Placenta Cot 25-normalized .a 1220 to 2240 1 to 1002       1002/1115
(89 %)
21 diff
(98.2 %id)
AL702982 human skeletal muscle .a 1777 to 2528 1 to 752       752/752
(100 %)
3 diff
(99.7 %id)
AY187233   .a 2388 to 2977 1 to 590       590/590
(100 %)
0 diff
(100 %id)
CU448840 epidermis .a 3026 to 3691 681 to 16     Submitted on the opposite strand 666/681
(97 %)
2 diff
(99.8 %id)
BF902149 marrow .a 3321 to 3725 429 to 25     Submitted on the opposite strand 405/429
(94 %)
0 diff
(100 %id)
BX380579 Placenta Cot 25-normalized .a 3677 to 4462 792 to 8       785/792
(99 %)
0 diff
(100 %id)
AA775466 heart .a 3792 to 4236 443 to 1       443/443
(100 %)
2 diff
(99.6 %id)
AI090427 B-cell, chronic lymphotic leukemia .a 3970 to 4328 1 to 359     Submitted on the opposite strand 359/359
(100 %)
1 diff
(99.8 %id)
AA910520 leiomyosarcoma, soft tissue .a 3990 to 4485 495 to 1       495/495
(100 %)
1 diff
(99.8 %id)
AI889000 2 pooled tumors (clear cell type), Kidney .a 4030 to 4484 455 to 1       455/455
(100 %)
6 diff
(98.7 %id)
AI681116 carcinoid, lung .a 4072 to 4479 408 to 1       408/408
(100 %)
0 diff
(100 %id)
BE327441 carcinoid, lung .a 4072 to 4477 406 to 1       406/406
(100 %)
0 diff
(100 %id)
BF475303 carcinoid, lung .a 4105 to 4483 379 to 1       379/379
(100 %)
0 diff
(100 %id)
AW517524 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 4137 to 4486 350 to 1   tiling clone,   350/350
(100 %)
1 diff
(99.8 %id)
AY187244   .b 1 to 1707 1 to 1707 exact tiling clone,   1707/1707
(100 %)
1 diff
(100.0 %id)
DQ868973   .c 1 to 750 1 to 750 exact tiling clone,   750/750
(100 %)
0 diff
(100 %id)
AY187245   .c 24 to 507 1 to 484       484/484
(100 %)
0 diff
(100 %id)
DA224866 brain .c 27 to 435 2 to 410   capped   409/409
(100 %)
0 diff
(100 %id)
AY187234   .d 1 to 618 1 to 618 exact tiling clone,   618/618
(100 %)
0 diff
(100 %id)
DA961582 Spleen .e 1 to 573 2 to 577 L37S F38I N39Q N40Q K41Q ... tiling clone, capped   576/576
(100 %)
3 diff
(99.5 %id)
AY187241   .f 1 to 506 1 to 506 exact tiling clone,   506/506
(100 %)
0 diff
(100 %id)
AY187239   .g 1 to 506 1 to 506 exact tiling clone,   506/506
(100 %)
0 diff
(100 %id)
AY187235   .h 1 to 450 1 to 450 exact tiling clone,   450/450
(100 %)
0 diff
(100 %id)
AY187238   .i 1 to 366 1 to 365 V58G G59V D60T E61R A63P ... tiling clone,   365/365
(100 %)
1 diff
(99.8 %id)
AY187240   .j 1 to 422 1 to 422 exact tiling clone,   422/422
(100 %)
0 diff
(100 %id)
AY187236   .k 1 to 602 1 to 602 exact tiling clone,   602/602
(100 %)
0 diff
(100 %id)
AY187242   .l 1 to 621 4 to 624 exact tiling clone,   624/624
(100 %)
0 diff
(100 %id)
AY187237   .m 1 to 338 1 to 338 exact tiling clone,   338/338
(100 %)
0 diff
(100 %id)
AY423901   .n-u 1 to 293 32 to 324 exact tiling clone,   293/324
(90 %)
6 diff
(98.2 %id)
BG946538 bladder_tumor Gene NOD2, variant not shown         Suspected internal deletion, this clone was ignored    
AY187246   Gene NOD2, variant not shown         This clone was ignored    
DA592843 lung Gene NOD2, variant not shown       capped This clone was ignored    
AK298099 lung Gene NOD2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI