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Gene CAPZBTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
435 representative clones for gene CAPZB back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA718591   .a 1 to 559 2 to 560   tiling clone, capped   559/561
(99 %)
3 diff
(99.5 %id)
AK301442 synovial membrane tissue from rheumatoidarthritis .a 515 to 2022 1 to 1509 S55G tiling clone,   1509/1509
(100 %)
3 diff
(99.9 %id)
DC295786 synovial membrane tissue from rheumatioidarthritis .a 515 to 1088 1 to 575       575/575
(100 %)
2 diff
(99.7 %id)
DC392016 Spleen .a 542 to 1096 1 to 556       556/556
(100 %)
1 diff
(99.9 %id)
BU163751 epidermoid carcinoma, cell line, salivary gland .a 559 to 1125 1 to 568       568/940
(60 %)
4 diff
(99.6 %id)
BF925778 nervous_tumor .a 608 to 1040 1 to 434       434/462
(93 %)
5 diff
(99.0 %id)
CR992199 T-Lymphocytes .a 728 to 1291 14 to 577   tiling clone,   564/577
(97 %)
6 diff
(99.0 %id)
BU567373 testis .a 906 to 1615 1 to 716       716/721
(99 %)
18 diff
(97.6 %id)
DC394669 testis .a 937 to 1392 1 to 456       456/456
(100 %)
0 diff
(100 %id)
EB387955 eye, optic nerve .b 22 to 799 10 to 795   tiling clone,   795/795
(100 %)
9 diff
(98.9 %id)
TI_44342901   .b 27 to 804 172 to 952       781/952
(82 %)
16 diff
(98.4 %id)
BI666878 brain, hypothalamus .b 28 to 804 45 to 824       819/824
(99 %)
16 diff
(98.1 %id)
CB267021 adipose .b 231 to 823 1 to 593   tiling clone,   593/593
(100 %)
0 diff
(100 %id)
BG258216 embryonal carcinoma, cell line, testis .c 1 to 763 1 to 757   tiling clone,   757/1122
(67 %)
16 diff
(98.6 %id)
BM450337 eye, retinoblastoma .c 41 to 826 1 to 787       787/1082
(72 %)
13 diff
(98.8 %id)
NM_004930.3   .c 44 to 1753 1 to 1710 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 1710/1710
(100 %)
0 diff
(100 %id)
BP339566 Spleen .c 65 to 646 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA632927 Kidney .c 66 to 643 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA022213   .c 76 to 631 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BJ994432 hepatoblastoma .c 76 to 635 1 to 560       560/560
(100 %)
0 diff
(100 %id)
DA837554 placenta .c 77 to 641 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BP349135 brain .c 77 to 658 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BI669917 brain, hypothalamus .c 78 to 832 1 to 754       754/793
(95 %)
11 diff
(98.7 %id)
BP260306 heart .c 79 to 661 1 to 583       583/583
(100 %)
0 diff
(100 %id)
TI_44345222   .c 83 to 832 93 to 841       749/880
(85 %)
13 diff
(98.6 %id)
BP288849 lung .c 83 to 667 1 to 585       585/585
(100 %)
0 diff
(100 %id)
DA679653   .c 84 to 641 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA841855 placenta .c 84 to 625 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA900469 skeletal muscle .c 84 to 639 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA985357 synovial membrane tissue from rheumatioidarthritis .c 84 to 635 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
TI_57164103   .c 85 to 839 26 to 782       757/1044
(72 %)
20 diff
(98.1 %id)
DA825285 pericardium .c 88 to 629 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
CN287937 embryonic stem cells, DMSO-treated H9 cellline .c 92 to 879 1 to 791       791/791
(100 %)
5 diff
(99.4 %id)
DR158506 human embryonic stem cells differentiated toan early endodermal cell type .c 93 to 889 1 to 797       797/797
(100 %)
0 diff
(100 %id)
BU509654 leiomyosarcoma, uterus .c 94 to 883 1 to 795       793/890
(89 %)
8 diff
(99.2 %id)
CX784201 human embryonic stem cells .c 94 to 676 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DR763138 embryonic stem .c 94 to 882 1 to 789       789/789
(100 %)
0 diff
(100 %id)
CR990753 T-Lymphocytes .c 94 to 565 1 to 472       472/475
(99 %)
1 diff
(99.8 %id)
BI761316 pooled colon, kidney, stomach .c 95 to 801 1 to 707       707/707
(100 %)
0 diff
(100 %id)
BI524035 pooled lung and spleen .c 95 to 1019 1 to 934 E221A N222K K223*     931/935
(99 %)
18 diff
(98.1 %id)
BM451686 eye, retinoblastoma .c 95 to 1025 1 to 943 T179N D219V I224S R225K S226V ...     943/1020
(92 %)
29 diff
(97.2 %id)
BU179541 large cell carcinoma, lung .c 95 to 967 1 to 876       874/879
(99 %)
15 diff
(98.3 %id)
CX869803 embryonic stem .c 95 to 715 1 to 621       621/621
(100 %)
0 diff
(100 %id)
CV811933 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 95 to 888 1 to 796       796/796
(100 %)
4 diff
(99.5 %id)
CN287935 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 96 to 765 1 to 670       670/679
(98 %)
1 diff
(99.9 %id)
BF339851 brain, glioblastoma with EGFR amplification .c 96 to 838 1 to 745       745/798
(93 %)
12 diff
(98.5 %id)
BI916209 brain .c 96 to 801 1 to 706       706/706
(100 %)
0 diff
(100 %id)
BM927152 brain .c 96 to 904 1 to 816       814/1071
(76 %)
11 diff
(99.0 %id)
DR155621 human embryonic stem cells differentiated toan early endodermal cell type .c 96 to 829 1 to 734       734/734
(100 %)
0 diff
(100 %id)
BQ675406 epidermoid carcinoma, cell line, salivary gland .c 98 to 808 1 to 711       711/898
(79 %)
6 diff
(99.4 %id)
BU957297 adenocarcinoma, cell line, breast .c 98 to 983 1 to 892       890/898
(99 %)
26 diff
(97.2 %id)
BQ880407 epidermoid carcinoma, cell line, salivary gland .c 99 to 903 1 to 809       809/903
(89 %)
12 diff
(98.7 %id)
BQ959244 leiomyosarcoma, uterus .c 100 to 907 1 to 807       807/912
(88 %)
7 diff
(99.3 %id)
CX781478 human embryonic stem cells .c 100 to 929 1 to 830       830/830
(100 %)
1 diff
(99.9 %id)
CX785596 human embryonic stem cells .c 101 to 876 1 to 776       776/776
(100 %)
0 diff
(100 %id)
BQ962506 leiomyosarcoma, uterus .c 105 to 977 1 to 874       874/878
(99 %)
6 diff
(99.4 %id)
BP250838 hippocampus .c 106 to 687 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP259727 heart .c 106 to 686 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP347925 brain .c 107 to 689 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA072969 cerebellum .c 108 to 686 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA228780 brain .c 108 to 661 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB180613 kidney, tumor tissue .c 108 to 655 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
CR989894 T-Lymphocytes .c 109 to 1007 1 to 899 K267X Q270X     899/899
(100 %)
0 diff
(100 %id)
CR992292 T-Lymphocytes .c 109 to 1004 1 to 896 Q247X D251N K254X A257X K259X ...     896/896
(100 %)
1 diff
(99.9 %id)
BM467795 leiomyosarcoma, uterus .c 110 to 1167 1 to 1060 N241H L243A R244E E264G A265G ...     1060/1060
(100 %)
24 diff
(97.8 %id)
CD557935 testis .c 112 to 958 1 to 854       852/854
(99 %)
13 diff
(98.5 %id)
CR997388 T-Lymphocytes .c 112 to 968 1 to 858       858/862
(99 %)
5 diff
(99.5 %id)
BE274508 melanotic melanoma, skin .c 113 to 626 1 to 514       514/514
(100 %)
0 diff
(100 %id)
BM558136 astrocytoma grade IV, cell line, brain .c 114 to 1101 1 to 1002 L243A R244E D251X K252Q E256G ...     1002/1029
(97 %)
37 diff
(96.5 %id)
DA421721 cervix .c 115 to 625 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
BQ691560 ductal carcinoma, cell line, Pancreas .c 115 to 945 1 to 839       837/886
(94 %)
13 diff
(98.6 %id)
BQ686587 ductal carcinoma, cell line, Pancreas .c 115 to 915 1 to 805       805/945
(85 %)
12 diff
(98.8 %id)
BI603718 brain, hypothalamus .c 116 to 838 1 to 724       724/747
(96 %)
11 diff
(98.6 %id)
BE787203 large cell carcinoma, lung .c 117 to 765 1 to 649       649/1085
(59 %)
0 diff
(100 %id)
BI837591 pooled pancreas and spleen .c 119 to 840 1 to 726       726/764
(95 %)
16 diff
(98.0 %id)
DA584983 lung .c 120 to 657 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
BP232705 muscle .c 121 to 701 1 to 581       581/581
(100 %)
0 diff
(100 %id)
CR987073 T-Lymphocytes .c 121 to 1012 1 to 894 N188X E230X I231N Y232L F233L ...     894/894
(100 %)
10 diff
(98.9 %id)
DA007266   .c 122 to 698 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
TI_45215480   .c 123 to 838 93 to 809       717/832
(86 %)
12 diff
(98.6 %id)
CR989305 T-Lymphocytes .c 124 to 961 1 to 839       839/839
(100 %)
1 diff
(99.9 %id)
BU187841 eye, retinoblastoma .c 126 to 1003 1 to 882 P208H H209T I210*     882/882
(100 %)
11 diff
(98.8 %id)
BC107752 Pooled, 40 cell lines .c 129 to 1166 1 to 1038 exact AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 1038/1038
(100 %)
0 diff
(100 %id)
BU942635 mixed (pool of 40 RNAs) .c 130 to 922 1 to 797       797/802
(99 %)
13 diff
(98.4 %id)
TI_57200036   .c 130 to 872 64 to 808       744/808
(92 %)
14 diff
(98.3 %id)
BF762449 colon_est .c 131 to 601 474 to 4     Submitted on the opposite strand 471/474
(99 %)
2 diff
(99.6 %id)
BI258142 cervical carcinoma cell line, cervix .c 134 to 841 1 to 709       709/832
(85 %)
9 diff
(99.0 %id)
BG574223 breast, mammary adenocarcinoma, cell line .c 135 to 960 1 to 829       829/830
(99 %)
6 diff
(99.3 %id)
CX781686 human embryonic stem cells .c 135 to 951 1 to 817       817/817
(100 %)
0 diff
(100 %id)
CD675002 eye, lens .c 136 to 665 1 to 530       530/530
(100 %)
0 diff
(100 %id)
BG166575 hypernephroma, cell line, Kidney .c 136 to 839 1 to 705       705/819
(86 %)
14 diff
(98.3 %id)
BQ420574 embryonal carcinoma, cell line, testis .c 136 to 1025 7 to 897 K223X N260K D261*     891/900
(99 %)
5 diff
(99.5 %id)
CR975423 T-Lymphocytes .c 136 to 1009 1 to 868 K252N S253Q K254T Q255R E256S ...     868/868
(100 %)
7 diff
(99.2 %id)
CX870555 embryonic stem .c 137 to 881 1 to 745       745/745
(100 %)
0 diff
(100 %id)
DR156483 human embryonic stem cells differentiated toan early endodermal cell type .c 137 to 866 1 to 730       730/730
(100 %)
0 diff
(100 %id)
BQ722277 sympathetic trunk .c 138 to 903 1 to 765       765/910
(84 %)
10 diff
(99.0 %id)
BU509235 leiomyosarcoma, uterus .c 138 to 1025 1 to 899 K223X K237R L243A R244E S245V ...     899/926
(97 %)
16 diff
(98.3 %id)
AK313113 colon .c 139 to 996 1 to 858 K143R     858/858
(100 %)
2 diff
(99.8 %id)
BI601579 brain, hypothalamus .c 139 to 953 6 to 824       816/825
(98 %)
20 diff
(97.6 %id)
BI668514 brain, hypothalamus .c 139 to 852 6 to 719       714/719
(99 %)
2 diff
(99.8 %id)
BQ421662 embryonal carcinoma, cell line, testis .c 139 to 971 1 to 835       835/835
(100 %)
7 diff
(99.2 %id)
CB129800 Liver .c 139 to 708 1 to 570       570/570
(100 %)
0 diff
(100 %id)
BP365445 lung .c 139 to 721 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA356770 subthalamic nucleus .c 140 to 703 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB062285 testis .c 140 to 668 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DB475197 hippocampus .c 141 to 804 1 to 664       664/664
(100 %)
0 diff
(100 %id)
DB505231 hypothalamus .c 141 to 594 1 to 454       454/454
(100 %)
0 diff
(100 %id)
BI520145 brain, medulla .c 141 to 963 1 to 823       823/823
(100 %)
13 diff
(98.5 %id)
TI_43963353   .c 141 to 963 33 to 855       823/855
(96 %)
13 diff
(98.5 %id)
CN287939 embryonic stem cells, cell lines H1, H7, andH9 .c 143 to 699 1 to 557       557/557
(100 %)
0 diff
(100 %id)
BM918463 pooled pancreas and spleen .c 147 to 1169 1 to 1036 D238G I239Y V240R N241Q G242W ...     1036/1036
(100 %)
24 diff
(97.7 %id)
CR997669 T-Lymphocytes .c 151 to 902 1 to 754       754/754
(100 %)
3 diff
(99.7 %id)
DA540436 lung .c 154 to 721 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BQ219281 epithelioid carcinoma, Pancreas .c 154 to 921 1 to 769       769/858
(89 %)
8 diff
(99.1 %id)
CD652847 Embryonic Stem cells .c 155 to 955 12 to 808       797/813
(98 %)
12 diff
(98.6 %id)
BE906615 epithelioid carcinoma, Pancreas .c 157 to 649 1 to 493       493/493
(100 %)
0 diff
(100 %id)
BI768680 pooled lung and spleen .c 161 to 771 10 to 620       611/627
(97 %)
9 diff
(98.6 %id)
BI517337 pooled colon, kidney, stomach .c 162 to 960 5 to 803       799/803
(99 %)
12 diff
(98.6 %id)
BE278901 choriocarcinoma, placenta .c 165 to 711 1 to 547       547/547
(100 %)
0 diff
(100 %id)
AL521147 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 170 to 939 1 to 770   fully sequenced,   770/770
(100 %)
0 diff
(100 %id)
BX375883 Neuroblastoma Cot 25-normalized .c 170 to 1001 1 to 833 E264G A265G L266F K267E R268E ...     833/833
(100 %)
2 diff
(99.8 %id)
BX333762 Neuroblastoma Cot 50-normalized .c 170 to 1195 1 to 1017 exact     1017/1059
(96 %)
12 diff
(98.9 %id)
BX418363 brain, fetal brain .c 170 to 1049 1 to 882 P18X L31X S41X L47X D52X ...     882/882
(100 %)
2 diff
(99.8 %id)
AL534751 brain, fetal brain .c 170 to 1080 1 to 902 D52B fully sequenced,   902/902
(100 %)
3 diff
(99.7 %id)
AL539092 brain, fetal brain .c 170 to 862 1 to 693   fully sequenced,   693/693
(100 %)
0 diff
(100 %id)
BX356347 Placenta Cot 25-normalized .c 170 to 1084 1 to 902 exact fully sequenced,   902/902
(100 %)
1 diff
(99.9 %id)
BX337341 Placenta Cot 25-normalized .c 170 to 796 1 to 627   fully sequenced,   627/627
(100 %)
0 diff
(100 %id)
BX366818 Placenta Cot 25-normalized .c 170 to 910 1 to 741   fully sequenced,   741/741
(100 %)
2 diff
(99.8 %id)
BX398399 Placenta Cot 25-normalized .c 170 to 885 1 to 716   fully sequenced, AAA   716/716
(100 %)
0 diff
(100 %id)
BX398876 Placenta Cot 25-normalized .c 170 to 862 1 to 693   fully sequenced,   693/693
(100 %)
0 diff
(100 %id)
BX339228 Placenta Cot 25-normalized .c 170 to 939 1 to 770   fully sequenced,   770/770
(100 %)
0 diff
(100 %id)
BP419511 small intestine .c 171 to 697 4 to 530     Submitted on the opposite strand 527/530
(99 %)
0 diff
(100 %id)
CR590504 Placenta Cot 25-normalized .c 172 to 1712 1 to 1541       1541/1541
(100 %)
0 diff
(100 %id)
CR591278 fetal brain .c 172 to 1705 1 to 1534       1534/1534
(100 %)
0 diff
(100 %id)
CR592519 fetal brain .c 172 to 1739 1 to 1568       1568/1568
(100 %)
0 diff
(100 %id)
CR595642 Placenta Cot 25-normalized .c 172 to 1723 1 to 1552       1552/1552
(100 %)
0 diff
(100 %id)
CR596107 T cells (Jurkat cell line) .c 172 to 1733 1 to 1562       1562/1562
(100 %)
0 diff
(100 %id)
CR596559 adult brain .c 172 to 1721 1 to 1550       1550/1550
(100 %)
0 diff
(100 %id)
CR600840 fetal brain .c 172 to 1731 1 to 1560       1560/1560
(100 %)
0 diff
(100 %id)
CR603606 fetal brain .c 172 to 1718 1 to 1547       1547/1547
(100 %)
0 diff
(100 %id)
CR603675 Placenta Cot 25-normalized .c 172 to 1351 1 to 1180       1180/1180
(100 %)
0 diff
(100 %id)
CR603731 placenta .c 172 to 1723 1 to 1552       1552/1552
(100 %)
0 diff
(100 %id)
CR606068 Placenta Cot 25-normalized .c 172 to 1704 1 to 1533       1533/1533
(100 %)
0 diff
(100 %id)
CR608661 fetal liver .c 172 to 1733 1 to 1562       1562/1562
(100 %)
0 diff
(100 %id)
CR608903 Placenta Cot 25-normalized .c 172 to 1107 1 to 936       936/936
(100 %)
0 diff
(100 %id)
CR609341 Placenta Cot 25-normalized .c 172 to 1709 1 to 1538       1538/1538
(100 %)
0 diff
(100 %id)
CR610963 Placenta Cot 25-normalized .c 172 to 1717 1 to 1546       1546/1546
(100 %)
0 diff
(100 %id)
CR614610 Placenta Cot 25-normalized .c 172 to 1716 1 to 1545       1545/1545
(100 %)
0 diff
(100 %id)
CR615786 B cells (Ramos cell line) Cot 25-normalized .c 172 to 1714 1 to 1543       1543/1543
(100 %)
0 diff
(100 %id)
CR615877 Placenta Cot 25-normalized .c 172 to 1718 1 to 1547       1547/1547
(100 %)
0 diff
(100 %id)
CR617401 Placenta Cot 25-normalized .c 172 to 1747 1 to 1576       1576/1576
(100 %)
0 diff
(100 %id)
CR619829 Neuroblastoma Cot 10-normalized .c 172 to 1719 1 to 1548       1548/1548
(100 %)
0 diff
(100 %id)
CR620413 T cells (Jurkat cell line) Cot10-normalized .c 172 to 1718 1 to 1547       1547/1547
(100 %)
0 diff
(100 %id)
CR620796 B cells (Ramos cell line) .c 172 to 1748 1 to 1577   tiling clone,   1577/1577
(100 %)
0 diff
(100 %id)
CR621825 Placenta Cot 25-normalized .c 172 to 1747 1 to 1576       1576/1576
(100 %)
0 diff
(100 %id)
CR622138 Placenta Cot 25-normalized .c 172 to 1723 1 to 1552       1552/1552
(100 %)
0 diff
(100 %id)
CR622250 Placenta Cot 25-normalized .c 172 to 1717 1 to 1546       1546/1546
(100 %)
0 diff
(100 %id)
CR622513 B cells (Ramos cell line) .c 172 to 1718 1 to 1547       1547/1547
(100 %)
0 diff
(100 %id)
BM478867 melanotic melanoma, skin .c 176 to 1084 1 to 916 L243A R244E S245V V246C Q247A ...     916/1124
(81 %)
25 diff
(97.8 %id)
BC109241 PCR rescued clones .c 178 to 1050 1 to 873 exact     873/874
(99 %)
1 diff
(99.9 %id)
BC109242 PCR rescued clones .c 178 to 1050 1 to 873 exact     873/874
(99 %)
1 diff
(99.9 %id)
BT019470   .c 178 to 995 1 to 818       818/819
(99 %)
1 diff
(99.9 %id)
BT019471   .c 178 to 995 1 to 818       818/819
(99 %)
2 diff
(99.8 %id)
U03271 retina .c 178 to 1256 1 to 1077 exact     1077/1077
(100 %)
2 diff
(99.9 %id)
BF917228 uterus_tumor .c 180 to 432 254 to 1     Submitted on the opposite strand 254/257
(98 %)
10 diff
(96.2 %id)
BM924883 pooled colon, kidney, stomach .c 180 to 914 52 to 790       739/1138
(64 %)
17 diff
(98.6 %id)
BQ438776 large cell carcinoma, lung .c 180 to 1039 54 to 923       868/923
(94 %)
28 diff
(97.0 %id)
CX754891 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 180 to 898 64 to 780     Submitted on the opposite strand 717/780
(91 %)
9 diff
(98.9 %id)
TI_45235563   .c 180 to 960 75 to 855       781/855
(91 %)
11 diff
(98.8 %id)
TI_57165672   .c 180 to 840 97 to 761       665/799
(83 %)
20 diff
(97.5 %id)
TI_45215428   .c 180 to 920 170 to 912       743/948
(78 %)
21 diff
(97.8 %id)
TI_44344685   .c 180 to 852 125 to 797       673/797
(84 %)
8 diff
(99.0 %id)
BX421825 T cells (Jurkat cell line) .c 182 to 1112 1 to 927       927/992
(93 %)
10 diff
(99.0 %id)
CN287938 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 186 to 819 1 to 634       634/639
(99 %)
1 diff
(99.9 %id)
AA430609 ovarian tumor, ovary .c 190 to 636 1 to 444       446/444
(100 %)
3 diff
(99.4 %id)
BU147044 dorsal root ganglia .c 191 to 1042 1 to 860       860/868
(99 %)
10 diff
(98.9 %id)
BU151117 dorsal root ganglia .c 191 to 1011 1 to 831       831/851
(97 %)
14 diff
(98.4 %id)
BI822584 pooled brain, lung, testis .c 193 to 771 1 to 579       579/586
(98 %)
3 diff
(99.5 %id)
CT000658 T-Lymphocytes .c 193 to 1107 1 to 915       915/915
(100 %)
2 diff
(99.8 %id)
BE315399 adenocarcinoma cell line, ovary .c 204 to 839 1 to 635       635/694
(91 %)
7 diff
(99.0 %id)
BI861062 breast, mammary adenocarcinoma, cell line .c 216 to 983 1 to 771       771/771
(100 %)
6 diff
(99.3 %id)
CX786556 human embryonic stem cells .c 224 to 1094 1 to 871       871/871
(100 %)
0 diff
(100 %id)
BP289603 lung .c 224 to 804 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BI026179 marrow .c 225 to 469 251 to 6       246/257
(95 %)
5 diff
(98.1 %id)
BI026188 marrow .c 225 to 592 379 to 14       366/385
(95 %)
8 diff
(98.0 %id)
CA942022 Pancreas, Purified pancreatic islet .c 233 to 637 1 to 405       405/405
(100 %)
0 diff
(100 %id)
EC541515 Prostate .c 246 to 342 97 to 1       97/97
(100 %)
0 diff
(100 %id)
CN287926 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 253 to 823 1 to 571       571/571
(100 %)
0 diff
(100 %id)
TI_57164786   .c 263 to 892 52 to 682       631/682
(92 %)
12 diff
(98.3 %id)
EC547921 Prostate .c 274 to 376 102 to 2       101/102
(99 %)
0 diff
(100 %id)
EC476218 Prostate .c 280 to 380 97 to 1       97/97
(100 %)
3 diff
(97.0 %id)
BP338263 Spleen .c 283 to 861 9 to 588       580/588
(98 %)
2 diff
(99.7 %id)
BG315376   .c 293 to 544 255 to 1       255/255
(100 %)
10 diff
(96.1 %id)
BM561552 blood, natural killer cells, cell line .c 293 to 1297 1 to 1014       1014/1014
(100 %)
27 diff
(97.4 %id)
BF993171 placenta_normal .c 310 to 760 452 to 4       449/470
(95 %)
1 diff
(99.8 %id)
BF994053 placenta_normal .c 310 to 756 447 to 4       444/466
(95 %)
1 diff
(99.8 %id)
BI027435 marrow .c 311 to 465 166 to 12       155/171
(90 %)
2 diff
(98.9 %id)
EC439938 Prostate .c 331 to 440 112 to 5       108/112
(96 %)
2 diff
(98.3 %id)
EC494393 Prostate .c 331 to 443 112 to 1       112/112
(100 %)
1 diff
(99.2 %id)
EC513759 Prostate .c 331 to 443 113 to 1       113/113
(100 %)
0 diff
(100 %id)
BQ649251 hepatocellular carcinoma, cell line, Liver .c 346 to 1249 1 to 902       902/904
(99 %)
12 diff
(98.7 %id)
BM473069 duodenal adenocarcinoma, cell line, small intestine .c 366 to 1230 1 to 874       874/1026
(85 %)
14 diff
(98.7 %id)
BU509259 leiomyosarcoma, uterus .c 385 to 1295 1 to 911       911/911
(100 %)
15 diff
(98.4 %id)
BF871586 lung_tumor .c 386 to 755 383 to 11     Submitted on the opposite strand 373/384
(97 %)
21 diff
(94.6 %id)
TI_227714033   .c 387 to 1363 1051 to 84   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 968/1029
(94 %)
23 diff
(97.8 %id)
EC496230 Prostate .c 396 to 495 98 to 1       98/98
(100 %)
2 diff
(98.0 %id)
EC556858 Prostate .c 400 to 498 103 to 5       99/103
(96 %)
0 diff
(100 %id)
EC471728 Prostate .c 411 to 508 101 to 5       97/101
(96 %)
0 diff
(100 %id)
BQ057928 lymph, lymphoma, cell line .c 412 to 1169 1 to 758       758/762
(99 %)
1 diff
(99.9 %id)
AW754353 colon .c 418 to 618 202 to 2       201/215
(93 %)
0 diff
(100 %id)
BC024601 Ovary, adenocarcinoma .c 426 to 1169 1 to 744   available from MGC, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 744/744
(100 %)
0 diff
(100 %id)
BU621860 Bone, Subchondral Bone .c 426 to 1169 759 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 741/741
(100 %)
4 diff
(99.5 %id)
CV574102 cornea, eye .c 435 to 1058 1 to 624       624/624
(100 %)
0 diff
(100 %id)
BF037407 adenocarcinoma, ovary .c 447 to 1152 1 to 702   available from MGC,   702/702
(100 %)
4 diff
(99.5 %id)
EC504943 Prostate .c 448 to 533 86 to 1       86/86
(100 %)
5 diff
(94.2 %id)
BE696737 colon .c 454 to 704 277 to 30       248/277
(89 %)
1 diff
(99.7 %id)
BU192991 epithelioid carcinoma, Pancreas .c 461 to 1198 1 to 741       741/828
(89 %)
8 diff
(99.1 %id)
BU521053 leiomyosarcoma, uterus .c 483 to 1304 1 to 827       827/827
(100 %)
6 diff
(99.3 %id)
BF808927 colon_ins .c 507 to 721 215 to 1     Submitted on the opposite strand 215/255
(84 %)
5 diff
(98.1 %id)
BQ937500 epidermoid carcinoma, cell line, lung .c 507 to 1346 844 to 1     Submitted on the opposite strand 844/885
(95 %)
13 diff
(98.6 %id)
EC558366 Prostate .c 511 to 602 93 to 2       92/93
(98 %)
0 diff
(100 %id)
DN601956 human embryonic stem cells .c 524 to 1078 1 to 555       555/555
(100 %)
0 diff
(100 %id)
EC490990 Prostate .c 534 to 624 90 to 1       90/90
(100 %)
1 diff
(98.9 %id)
EC534515 Prostate .c 534 to 624 88 to 1       88/88
(100 %)
3 diff
(96.6 %id)
EC577725 Prostate .c 534 to 624 91 to 1       91/91
(100 %)
0 diff
(100 %id)
CV570827 cornea, eye .c 547 to 1156 1 to 610       610/610
(100 %)
0 diff
(100 %id)
CU449093 epidermis .c 558 to 854 300 to 4     Submitted on the opposite strand 297/313
(94 %)
6 diff
(98.1 %id)
CU455065 epidermis .c 558 to 815 300 to 42     Submitted on the opposite strand 259/305
(84 %)
5 diff
(98.4 %id)
EC515663 Prostate .c 568 to 649 96 to 16       81/96
(84 %)
0 diff
(100 %id)
BI856646 breast, mammary adenocarcinoma, cell line .c 569 to 1336 1 to 770       770/776
(99 %)
6 diff
(99.3 %id)
CR621111 Neuroblastoma Cot 25-normalized .c 575 to 1724 1 to 1150       1150/1150
(100 %)
0 diff
(100 %id)
BQ420870 embryonal carcinoma, cell line, testis .c 575 to 1449 1 to 876       876/876
(100 %)
8 diff
(99.1 %id)
EC496984 Prostate .c 618 to 716 101 to 2       100/101
(99 %)
0 diff
(100 %id)
EC585109 Prostate .c 618 to 714 101 to 5       97/101
(96 %)
0 diff
(100 %id)
BI056347 placenta_normal .c 646 to 831 195 to 10       186/199
(93 %)
2 diff
(99.0 %id)
BG008314 placenta_normal .c 672 to 820 156 to 10       147/156
(94 %)
2 diff
(98.8 %id)
BF875013 lung_tumor .c 674 to 1070 397 to 1     Submitted on the opposite strand 397/397
(100 %)
0 diff
(100 %id)
EC487929 Prostate .c 696 to 784 90 to 1       90/90
(100 %)
1 diff
(98.9 %id)
FN054562 breast carcinoma .c 719 to 796 78 to 1     Submitted on the opposite strand 78/79
(98 %)
1 diff
(98.8 %id)
BM762051 myeloma .c 719 to 1384 1 to 666       666/666
(100 %)
0 diff
(100 %id)
BM839957 myeloma .c 719 to 1229 1 to 511       511/511
(100 %)
0 diff
(100 %id)
BX337340 Placenta Cot 25-normalized .c 735 to 1712 978 to 1   fully sequenced,   978/978
(100 %)
1 diff
(99.9 %id)
BU623792 cell lines, Enchondroma .c 744 to 1422 697 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 679/679
(100 %)
0 diff
(100 %id)
BF876056 lung_tumor .c 753 to 1070 318 to 1     Submitted on the opposite strand 318/318
(100 %)
0 diff
(100 %id)
CA427608 Bone, Subchondral Bone .c 757 to 1422 684 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 666/666
(100 %)
0 diff
(100 %id)
ES309158 occipital hair of pubic hypotrichosispatient, skin .c 763 to 1169 438 to 27     Submitted on the opposite strand 412/552
(74 %)
2 diff
(99.7 %id)
BE696733 colon .c 765 to 1180 424 to 1       422/425
(99 %)
24 diff
(94.4 %id)
CU455648 epidermis .c 769 to 1145 401 to 25     Submitted on the opposite strand 377/418
(90 %)
1 diff
(99.8 %id)
CU453335 epidermis .c 782 to 950 185 to 17     Submitted on the opposite strand 169/191
(88 %)
3 diff
(98.5 %id)
CU453637 epidermis .c 782 to 1206 441 to 17     Submitted on the opposite strand 425/447
(95 %)
3 diff
(99.4 %id)
CU455829 epidermis .c 782 to 1206 441 to 17     Submitted on the opposite strand 425/447
(95 %)
3 diff
(99.4 %id)
CU453789 epidermis .c 798 to 1282 506 to 22     Submitted on the opposite strand 485/516
(93 %)
4 diff
(99.3 %id)
AL567661 brain, fetal brain .c 801 to 1731 932 to 1   fully sequenced,   932/932
(100 %)
1 diff
(99.9 %id)
BX398875 Placenta Cot 25-normalized .c 801 to 1723 922 to 1   fully sequenced,   922/922
(100 %)
1 diff
(99.9 %id)
CV363661 colon_normal .c 804 to 1082 340 to 66     Submitted on the opposite strand 275/340
(80 %)
4 diff
(98.9 %id)
TI_227712502   .c 823 to 1702 949 to 78   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 872/1036
(84 %)
21 diff
(98.0 %id)
TI_149313682   .c 833 to 1702 948 to 88   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 861/941
(91 %)
13 diff
(98.7 %id)
BX398398 Placenta Cot 25-normalized .c 855 to 1717 863 to 1   fully sequenced,   863/863
(100 %)
3 diff
(99.7 %id)
BP424756 small intestine .c 875 to 1373 1 to 499     Submitted on the opposite strand 499/499
(100 %)
0 diff
(100 %id)
AL521146 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 878 to 1719 841 to 1   fully sequenced,   841/841
(100 %)
2 diff
(99.8 %id)
BX366817 Placenta Cot 25-normalized .c 878 to 1723 846 to 1   fully sequenced,   846/846
(100 %)
1 diff
(99.9 %id)
BX339227 Placenta Cot 25-normalized .c 878 to 1708 838 to 8   fully sequenced,   831/838
(99 %)
0 diff
(100 %id)
BM790152 stomach .c 892 to 1404 1 to 513       513/513
(100 %)
0 diff
(100 %id)
BE696786 colon .c 898 to 1285 403 to 11       393/404
(97 %)
0 diff
(100 %id)
BE832245 marrow .c 904 to 1279 376 to 1       376/376
(100 %)
0 diff
(100 %id)
BF229041 amnion_normal .c 904 to 1269 384 to 11       374/449
(83 %)
0 diff
(100 %id)
BE696750 colon .c 907 to 1281 383 to 10       374/386
(96 %)
0 diff
(100 %id)
BE696762 colon .c 907 to 1175 321 to 52       270/324
(83 %)
0 diff
(100 %id)
BE696797 colon .c 907 to 1242 343 to 7       337/346
(97 %)
0 diff
(100 %id)
BE696800 colon .c 907 to 1259 352 to 1       352/355
(99 %)
3 diff
(99.2 %id)
BE696805 colon .c 907 to 1285 386 to 11       376/389
(96 %)
0 diff
(100 %id)
BE718922 head_neck .c 907 to 1096 198 to 9       190/211
(90 %)
0 diff
(100 %id)
BE774002 prostate_tumor .c 907 to 1284 378 to 1       378/389
(97 %)
12 diff
(97.0 %id)
BE832244 marrow .c 907 to 1279 373 to 1       373/376
(99 %)
1 diff
(99.8 %id)
BE924885 amnion_normal .c 907 to 1272 371 to 6       366/403
(90 %)
0 diff
(100 %id)
BE924893 amnion_normal .c 907 to 1279 378 to 1       378/381
(99 %)
13 diff
(96.6 %id)
BE924905 amnion_normal .c 907 to 1272 372 to 7       366/375
(97 %)
0 diff
(100 %id)
BE924935 amnion_normal .c 907 to 1285 386 to 8       379/405
(93 %)
0 diff
(100 %id)
BE924952 amnion_normal .c 907 to 1285 409 to 11       399/412
(96 %)
0 diff
(100 %id)
BE924961 amnion_normal .c 907 to 1279 374 to 1       374/377
(99 %)
14 diff
(96.3 %id)
BE937604 testis_normal .c 907 to 1279 374 to 1       374/377
(99 %)
8 diff
(97.9 %id)
BF091055 testis_normal .c 907 to 1278 390 to 19       372/412
(90 %)
0 diff
(100 %id)
BF091062 testis_normal .c 907 to 1279 374 to 2       373/377
(98 %)
0 diff
(100 %id)
BF091063 testis_normal .c 907 to 1272 379 to 15       365/382
(95 %)
0 diff
(100 %id)
BF091066 testis_normal .c 907 to 1277 376 to 3       374/379
(98 %)
0 diff
(100 %id)
BF091084 testis_normal .c 907 to 1279 372 to 1       372/372
(100 %)
16 diff
(95.7 %id)
BF091085 testis_normal .c 907 to 1278 378 to 2       377/397
(94 %)
0 diff
(100 %id)
BF091088 testis_normal .c 907 to 1279 375 to 1       375/393
(95 %)
18 diff
(95.5 %id)
BF091092 testis_normal .c 907 to 1273 387 to 21       367/405
(90 %)
0 diff
(100 %id)
BF229043 amnion_normal .c 907 to 1285 396 to 11       386/399
(96 %)
0 diff
(100 %id)
BF229049 amnion_normal .c 907 to 1279 400 to 25       376/403
(93 %)
0 diff
(100 %id)
BF229067 amnion_normal .c 907 to 1285 381 to 3       379/384
(98 %)
0 diff
(100 %id)
BF375866 testis_normal .c 907 to 1278 368 to 2       367/390
(94 %)
0 diff
(100 %id)
BQ332340 lung_tumor .c 907 to 1415 510 to 1       510/510
(100 %)
12 diff
(97.7 %id)
BQ361541 ovary .c 909 to 1216 313 to 6       308/313
(98 %)
0 diff
(100 %id)
TI_149300284   .c 909 to 1702 870 to 79   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 792/951
(83 %)
8 diff
(99.2 %id)
BE047752 brain, tumor, 5 pooled (see description) .c 913 to 1166 1 to 254       254/254
(100 %)
0 diff
(100 %id)
BE927462 colon .c 915 to 1279 364 to 1       364/364
(100 %)
2 diff
(99.5 %id)
BE927452 colon .c 918 to 1277 379 to 18       362/379
(95 %)
0 diff
(100 %id)
CA314289 Human Lung Epithelial cells, lung .c 924 to 1169 62 to 307     Submitted on the opposite strand 246/312
(78 %)
1 diff
(99.7 %id)
BQ347453 head_neck .c 929 to 1295 372 to 1       372/372
(100 %)
22 diff
(94.1 %id)
BQ374857 testis_normal .c 934 to 1285 362 to 10       353/368
(95 %)
0 diff
(100 %id)
AW027687 thymus, pooled .c 939 to 1422 484 to 1       484/484
(100 %)
0 diff
(100 %id)
BQ332171 lung_tumor .c 941 to 1385 461 to 16       446/461
(96 %)
0 diff
(100 %id)
BI044019 ovary .c 942 to 1216 286 to 10       277/286
(96 %)
0 diff
(100 %id)
BQ361557 ovary .c 942 to 1103 177 to 12       166/196
(84 %)
0 diff
(100 %id)
TI_159713954   .c 946 to 1527 53 to 634     Submitted on the opposite strand 582/1064
(54 %)
1 diff
(100.0 %id)
AW799960 uterus .c 947 to 1102 156 to 1       156/156
(100 %)
1 diff
(99.4 %id)
AW351845 colon .c 960 to 1164 205 to 1       205/214
(95 %)
5 diff
(97.7 %id)
BE828386 lung_tumor .c 965 to 1116 173 to 23       151/173
(87 %)
0 diff
(100 %id)
BE696782 colon .c 971 to 1289 337 to 20       318/337
(94 %)
0 diff
(100 %id)
CV571645 cornea, eye .c 975 to 1550 1 to 576       576/576
(100 %)
0 diff
(100 %id)
FN071224 breast carcinoma .c 980 to 1062 82 to 1     Submitted on the opposite strand 82/85
(96 %)
4 diff
(95.3 %id)
BE696772 colon .c 991 to 1283 303 to 12       292/303
(96 %)
0 diff
(100 %id)
CA842040 Pancreas, Purified pancreatic islet .c 992 to 1166 1 to 175       175/175
(100 %)
1 diff
(99.5 %id)
BG960704 colon .c 1015 to 1435 429 to 7       423/429
(98 %)
0 diff
(100 %id)
BQ374994 testis_normal .c 1022 to 1283 265 to 1       265/298
(88 %)
15 diff
(95.0 %id)
BQ326664 colon_normal .c 1037 to 1216 192 to 15       178/192
(92 %)
0 diff
(100 %id)
CR600755 Neuroblastoma Cot 10-normalized .c 1048 to 1751 1 to 704   tiling clone,   704/704
(100 %)
0 diff
(100 %id)
BF953973 nervous_normal .c 1049 to 1276 235 to 8       228/235
(97 %)
0 diff
(100 %id)
AL565641 brain, fetal brain .c 1050 to 1739 690 to 1   fully sequenced,   690/690
(100 %)
0 diff
(100 %id)
BI044363 ovary .c 1051 to 1332 314 to 35       280/331
(84 %)
0 diff
(100 %id)
BX351411 Placenta Cot 25-normalized .c 1054 to 1746 695 to 1   fully sequenced,   695/695
(100 %)
4 diff
(99.5 %id)
BE924888 amnion_normal .c 1060 to 1285 245 to 9       237/246
(96 %)
0 diff
(100 %id)
EC519932 Prostate .c 1083 to 1171 91 to 1       91/94
(96 %)
8 diff
(91.5 %id)
BF877364 lung_tumor .c 1091 to 1307 229 to 13     Submitted on the opposite strand 217/238
(91 %)
0 diff
(100 %id)
BQ374856 testis_normal .c 1110 to 1272 170 to 7       164/170
(96 %)
0 diff
(100 %id)
BQ368870 placenta_normal .c 1154 to 1414 258 to 2       257/272
(94 %)
0 diff
(100 %id)
BI059202 placenta_normal .c 1165 to 1266 118 to 15       104/118
(88 %)
0 diff
(100 %id)
BE924901 amnion_normal .c 1167 to 1279 113 to 1       113/117
(96 %)
3 diff
(97.5 %id)
BE172796 head_neck .c 1171 to 1344 176 to 1     Submitted on the opposite strand 176/176
(100 %)
2 diff
(98.9 %id)
BG319543 skin .c 1172 to 1324 153 to 1     Submitted on the opposite strand 153/153
(100 %)
0 diff
(100 %id)
AW262885 brain, three pooled meningiomas .c 1188 to 1702 515 to 1       515/515
(100 %)
0 diff
(100 %id)
AA453197   .c 1217 to 1506 1 to 290   fully sequenced,   290/290
(100 %)
0 diff
(100 %id)
CR594971 Placenta Cot 25-normalized .c 1231 to 1747 1 to 517       517/517
(100 %)
0 diff
(100 %id)
FN136359 breast carcinoma .c 1238 to 1346 105 to 1     Submitted on the opposite strand 105/108
(97 %)
4 diff
(96.3 %id)
FN061372 breast carcinoma .c 1242 to 1312 73 to 1     Submitted on the opposite strand 73/74
(98 %)
2 diff
(97.3 %id)
AW374523 colon .c 1249 to 1451 205 to 4       202/209
(96 %)
0 diff
(100 %id)
CU443666 epidermis .c 1256 to 1401 151 to 3     Submitted on the opposite strand 149/151
(98 %)
0 diff
(100 %id)
BQ368866 placenta_normal .c 1257 to 1419 162 to 1       162/162
(100 %)
3 diff
(98.2 %id)
AI888034 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 1263 to 1750 488 to 1       488/488
(100 %)
0 diff
(100 %id)
AA430524 ovarian tumor, ovary .c 1270 to 1708 439 to 1       439/439
(100 %)
0 diff
(100 %id)
EC455631 Prostate .c 1297 to 1419 128 to 5       124/128
(96 %)
0 diff
(100 %id)
CA952839 Pancreas, Purified pancreatic islet .c 1308 to 1745 438 to 1       438/438
(100 %)
2 diff
(99.6 %id)
AI866533 brain, tumor, 5 pooled (see description) .c 1338 to 1750 412 to 1       412/412
(100 %)
1 diff
(99.8 %id)
AA454158   .c 1476 to 1705 230 to 1   fully sequenced,   230/230
(100 %)
0 diff
(100 %id)
CA841748 Pancreas, Purified pancreatic islet .c 1512 to 1702 190 to 1       190/190
(100 %)
5 diff
(97.4 %id)
DB013352 esophageal, tumor tissue .d 1 to 579 2 to 580   tiling clone, capped   579/579
(100 %)
0 diff
(100 %id)
BF951721 nervous_normal .d 529 to 1033 515 to 13   tiling clone,   503/515
(97 %)
0 diff
(100 %id)
CU454700 epidermis .d 671 to 958 298 to 10     Submitted on the opposite strand 289/304
(95 %)
3 diff
(99.1 %id)
BE937606 testis_normal .d 798 to 1281 13 to 495   tiling clone,   484/495
(97 %)
6 diff
(98.8 %id)
AK125085 cord Blood .e 1 to 2067 2 to 2068 exact tiling clone, available from FLJ,   2068/2068
(100 %)
2 diff
(100.0 %id)
DA433309 cord Blood .e 1 to 545 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
CN291890 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f-u 1 to 537 1 to 537   tiling clone,   537/537
(100 %)
0 diff
(100 %id)
AK126650 cerebellum .f-u 234 to 5542 1 to 5309 Y97H S110P tiling clone, available from FLJ,   5309/5309
(100 %)
6 diff
(99.9 %id)
DA101916 cerebellum .f-u 235 to 800 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA102995 cerebellum .f-u 552 to 1037 2 to 485   tiling clone, capped   484/485
(99 %)
4 diff
(99.2 %id)
BX643958   .f-u 934 to 1618 91 to 773   tiling clone,   683/773
(88 %)
6 diff
(99.3 %id)
DA337892 hippocampus .f-u 997 to 1592 2 to 597   capped   596/597
(99 %)
2 diff
(99.7 %id)
DA100596 cerebellum .f-u 1004 to 1590 2 to 588   tiling clone, capped   587/587
(100 %)
1 diff
(99.9 %id)
BF901702 marrow .f-u 1196 to 1594 1 to 400       400/400
(100 %)
24 diff
(94.0 %id)
DA095289 cerebellum .f-u 1443 to 1985 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DA125295 cerebellum .f-u 1457 to 2009 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA330677 hippocampus .f-u 1457 to 1986 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DB147796 thymus .f-u 1481 to 2044 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB281683 uterus .f-u 1485 to 2033 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB083859 testis .f-u 1488 to 2037 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB290314 uterus .f-u 1538 to 2113 2 to 577   tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
DA095389 cerebellum .f-u 1573 to 2072 2 to 501   capped   500/502
(99 %)
1 diff
(99.9 %id)
DA242828 brain .f-u 1804 to 2400 2 to 598   capped   597/597
(100 %)
1 diff
(99.9 %id)
CN283812 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f-u 2222 to 2754 1 to 533       533/533
(100 %)
2 diff
(99.7 %id)
DA064942 cerebellum .f-u 2601 to 3171 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA076142 cerebellum .f-u 2620 to 3176 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA384608 thalamus .f-u 2826 to 3414 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DA697084   .f-u 2857 to 3420 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
BF359758 marrow .f-u 2981 to 3436 1 to 454       454/454
(100 %)
2 diff
(99.6 %id)
BF371426 prostate_normal .f-u 3017 to 3369 358 to 3       356/358
(99 %)
0 diff
(100 %id)
BF882027 lung_tumor .f-u 3072 to 3451 384 to 5     Submitted on the opposite strand 380/384
(98 %)
0 diff
(100 %id)
DA173137 amygdala .f-u 3190 to 3740 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
AI684349 B-cell, chronic lymphotic leukemia .f-u 3420 to 3902 484 to 1       484/484
(100 %)
4 diff
(99.2 %id)
BG422598 Kidney, renal cell adenocarcinoma .f-u 3505 to 4242 1 to 733       733/893
(82 %)
26 diff
(97.1 %id)
DB209248 trachea .f-u 3537 to 4054 2 to 519   capped   518/518
(100 %)
0 diff
(100 %id)
CB153755 brain .f-u 3596 to 4130 1 to 535       535/535
(100 %)
0 diff
(100 %id)
CN274629 embryonic stem cells, DMSO-treated H9 cellline .f-u 3628 to 4328 9 to 709       701/709
(98 %)
6 diff
(99.2 %id)
DB097451 testis .f-u 3709 to 4290 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
AK022336 mammary gland .f-u 3778 to 5494 1 to 1717   available from FLJ,   1717/1717
(100 %)
1 diff
(100.0 %id)
AU122104 mammary gland .f-u 3779 to 4534 2 to 757   capped   756/758
(99 %)
1 diff
(99.9 %id)
BF828405 head_normal .f-u 3822 to 4172 351 to 1     Submitted on the opposite strand 351/351
(100 %)
1 diff
(99.8 %id)
DB266427 uterus .f-u 3838 to 4407 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BE180682 head_neck .f-u 3866 to 4040 8 to 180       173/184
(94 %)
7 diff
(96.2 %id)
BQ301132 bocio_tumor .f-u 3906 to 4240 25 to 358       334/361
(92 %)
15 diff
(95.9 %id)
BG979990 colon_normal .f-u 4218 to 4551 345 to 16       330/433
(76 %)
0 diff
(100 %id)
BF772660 epid_tumor .f-u 4229 to 4650 6 to 423       418/425
(98 %)
9 diff
(97.9 %id)
AA322323 brain, cerebellum .f-u 4356 to 4595 1 to 240       240/240
(100 %)
1 diff
(99.6 %id)
AA324828 brain, cerebellum .f-u 4356 to 4542 1 to 187       187/189
(98 %)
2 diff
(99.0 %id)
DB298640 cerebellum .f-u 4591 to 5155 565 to 1       565/567
(99 %)
0 diff
(100 %id)
AW383369 head_neck .f-u 4672 to 4914 245 to 7       239/245
(97 %)
0 diff
(100 %id)
AW382673 head_neck .f-u 4675 to 4939 263 to 2       262/264
(99 %)
0 diff
(100 %id)
CA427706 Bone, Subchondral Bone .f-u 4677 to 5214 556 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 538/538
(100 %)
0 diff
(100 %id)
AU147776 mammary gland .f-u 4973 to 5494 522 to 1       522/522
(100 %)
3 diff
(99.5 %id)
DA821278 pericardium .g 1 to 562 2 to 563   tiling clone, capped   562/562
(100 %)
0 diff
(100 %id)
BE843238 testis_normal .g 551 to 963 607 to 195   tiling clone,   413/607
(68 %)
3 diff
(99.6 %id)
TI_57242892   .h 1 to 760 32 to 787 L49C C50V D51T Y52T N53T ... tiling clone,   756/787
(96 %)
12 diff
(98.5 %id)
BG768939 melanotic melanoma, high MDR (cell line), skin .i 1 to 581 1 to 581 exact tiling clone, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 581/581
(100 %)
0 diff
(100 %id)
BF970705 adrenal cortex carcinoma, cell line, adrenal gland .i 44 to 803 1 to 756   tiling clone,   756/1011
(74 %)
22 diff
(97.9 %id)
CD517732 White Matter .j-u 1 to 723 28 to 755 R9T K16N P17H E20R S21A ... tiling clone,   728/980
(74 %)
24 diff
(97.6 %id)
AW368920 head_neck .j-u 86 to 457 1 to 372   tiling clone,   372/372
(100 %)
1 diff
(99.8 %id)
AI754397 bone marrow stroma .j-u 460 to 965 524 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 506/506
(100 %)
1 diff
(99.9 %id)
AI049826   .j-u 563 to 983 433 to 11   tiling clone,   423/433
(97 %)
0 diff
(100 %id)
DW443398 Liver .j-u 578 to 791 17 to 230       214/230
(93 %)
6 diff
(97.4 %id)
BM799260 Ascites, stomach .k 1 to 432 1 to 433 K25N D39Y P54S R66K R80L ... tiling clone,   433/433
(100 %)
8 diff
(98.2 %id)
CR977594 T-Lymphocytes .l 1 to 888 5 to 894 exact tiling clone, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 894/894
(100 %)
2 diff
(99.8 %id)
BX647941 human testis .m-u 1 to 3456 1 to 3449 V64T L65T L66F H67F F68L ... tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 3449/3449
(100 %)
13 diff
(99.7 %id)
AA219246   .m-u 897 to 1193 1 to 298       298/298
(100 %)
3 diff
(99.0 %id)
BC069031 Spleen .m-u 1692 to 3461 1 to 1770   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 1770/1770
(100 %)
3 diff
(99.9 %id)
BQ710490 Spleen .m-u 1692 to 2441 19 to 772       754/906
(83 %)
25 diff
(97.3 %id)
BQ712496 Spleen .m-u 1693 to 2437 1 to 746   available from MGC,   746/944
(79 %)
13 diff
(98.7 %id)
BY797813 eye .m-u 2023 to 2595 1 to 573       573/573
(100 %)
2 diff
(99.7 %id)
AA219247   .m-u 2475 to 2869 394 to 1       394/394
(100 %)
2 diff
(99.5 %id)
BF930706 nervous_tumor .m-u 2598 to 2954 369 to 14     Submitted on the opposite strand 356/389
(91 %)
0 diff
(100 %id)
BM995563 lung, Metastatic Chondrosarcoma .m-u 2860 to 3481 620 to 1       620/620
(100 %)
7 diff
(98.9 %id)
AA621182 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .m-u 3188 to 3467 282 to 4   tiling clone,   279/282
(98 %)
0 diff
(100 %id)
CB993069 placenta, pre-eclamptic placenta .n 1 to 660 27 to 686 exact tiling clone, AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 660/686
(96 %)
8 diff
(98.9 %id)
CB992675 placenta, pre-eclamptic placenta .n 1 to 660 27 to 687 exact AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 661/687
(96 %)
7 diff
(99.0 %id)
CB992219 placenta, pre-eclamptic placenta .n 1 to 660 27 to 688 exact AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 662/688
(96 %)
8 diff
(98.9 %id)
AI022807 parathyroid gland, parathyroid tumor .n 63 to 660 605 to 8       598/605
(98 %)
2 diff
(99.7 %id)
AI075690 senescent fibroblast .n 63 to 660 599 to 6       594/599
(99 %)
4 diff
(99.4 %id)
AA588570 colon, colon tumor RER+ .n 136 to 657 521 to 1       521/555
(93 %)
14 diff
(97.5 %id)
AA634471   .n 144 to 547 408 to 5       404/408
(99 %)
1 diff
(99.8 %id)
AI147800 senescent fibroblast .n 162 to 660 508 to 13   AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 496/496
(100 %)
7 diff
(98.6 %id)
N98494 senescent fibroblast .n 228 to 660 443 to 11   AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 433/433
(100 %)
4 diff
(99.1 %id)
W45165 senescent fibroblast .n 234 to 660 438 to 7       432/438
(98 %)
7 diff
(98.5 %id)
CD369710 Alveolar Macrophage, lung .n 234 to 656 441 to 19   AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 423/423
(100 %)
0 diff
(100 %id)
TI_154192251   .n 252 to 660 50 to 458   AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 409/409
(100 %)
0 diff
(100 %id)
CF130299 Chondrosarcoma Lung Metastasis cell lines, lung .n 253 to 660 1 to 408   AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 408/408
(100 %)
0 diff
(100 %id)
AW974239   .n 264 to 655 392 to 1     Submitted on the opposite strand 392/397
(98 %)
8 diff
(98.0 %id)
AA740584 2 pooled tumors (clear cell type), Kidney .n 481 to 660 189 to 9       181/189
(95 %)
0 diff
(100 %id)
BG210363   .n 491 to 647 215 to 59     Submitted on the opposite strand 157/215
(73 %)
0 diff
(100 %id)
DB461182 testis .o 1 to 481 1 to 481   tiling clone,   481/481
(100 %)
0 diff
(100 %id)
DB063397 testis .o 14 to 556 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BI464741 testis .o 45 to 817 1 to 773 K55Q K56E I57D K58Q G59R ... tiling clone,   773/777
(99 %)
17 diff
(97.9 %id)
DB453232 testis .o 50 to 548 1 to 499       499/499
(100 %)
0 diff
(100 %id)
DB041820 testis .o 51 to 611 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB083551 testis .p 1 to 552 2 to 553 exact tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
BI258322 cervical carcinoma cell line, cervix .q 1 to 642 1 to 644 exact tiling clone,   644/675
(95 %)
9 diff
(98.7 %id)
BP195412 brain .q 10 to 591 1 to 582 exact     582/582
(100 %)
0 diff
(100 %id)
BY995535   .q 358 to 1017 32 to 691   tiling clone,   660/691
(95 %)
6 diff
(99.2 %id)
TI_59392192   .q 365 to 1083 102 to 820   tiling clone,   719/731
(98 %)
9 diff
(98.8 %id)
AA437006.
matches multiple genes
  .r 1 to 395 1 to 393   tiling clone, also hits gene kawbee 393/393
(100 %)
7 diff
(98.3 %id)
BE972727 testis .r 22 to 541 1 to 520 exact tiling clone,   520/522
(99 %)
1 diff
(99.9 %id)
BF741224 bocio_tumor .s-u 1 to 344 1 to 346 exact tiling clone,   346/346
(100 %)
4 diff
(98.9 %id)
BQ334826 marrow Gene CAPZB, variant not shown         This clone was ignored    
349 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h, .i, .j-u, .k, .l, .m-u, .n, .o, .p, .q, .r, .s-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI