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Gene LPCAT2andCAPNS2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
241 supporting clones for gene LPCAT2andCAPNS2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA789296   .e 1 to 614 616 to 3 M20I tiling clone,   614/616
(99 %)
1 diff
(99.9 %id)
AA305210 colon .g 16 to 513 1 to 493 A33R S34P F35S F36S P37R ...     493/493
(100 %)
6 diff
(98.8 %id)
AB244718   .a 787 to 2421 1 to 1635 exact     1635/1635
(100 %)
0 diff
(100 %id)
AJ420584   .a 1411 to 2992 9 to 1589   tiling clone, AAA   1581/1897
(83 %)
8 diff
(99.6 %id)
AK000488   .a 680 to 2560 1 to 1882 V45G Q46A Q47A T48D Q49A ... available from FLJ, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 1882/1882
(100 %)
2 diff
(99.9 %id)
AK023271   .a 2481 to 4506 1 to 2026   available from FLJ,   2026/2026
(100 %)
5 diff
(99.8 %id)
AK126523 uterus .j-u 1 to 3829 2 to 3826 K39R E40K N41P P42T H43L ... tiling clone, available from FLJ,   3826/3826
(100 %)
5 diff
(99.9 %id)
AK308386 trachea .a 677 to 2773 1 to 2095 L111*     2095/2095
(100 %)
4 diff
(99.9 %id)
DA021641   .a 2245 to 2820 2 to 578   capped   577/577
(100 %)
3 diff
(99.5 %id)
DA021662   .a 2245 to 2819 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
AW366682 head_neck .a 5023 to 5649 625 to 1   tiling clone,   625/630
(99 %)
12 diff
(98.1 %id)
AW966647   .a 5438 to 5986 552 to 1     Submitted on the opposite strand 552/554
(99 %)
11 diff
(98.1 %id)
AY052551   .d-u 30 to 1011 1 to 982 E74Q     982/982
(100 %)
2 diff
(99.8 %id)
Z28884 leg muscle, skeletal muscle .k-u 1 to 265 1 to 265 F11X tiling clone,   265/265
(100 %)
2 diff
(99.3 %id)
AU185614 skin .j-u 74 to 481 1 to 408       408/408
(100 %)
1 diff
(99.8 %id)
BC002472 Kidney, renal cell adenocarcinoma .a 647 to 2560 1 to 1914 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 1914/1914
(100 %)
1 diff
(100.0 %id)
BC005397 Bladder, carcinoma .d-u 14 to 1012 1 to 999 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 999/999
(100 %)
0 diff
(100 %id)
BC006000 Bladder, carcinoma .d-u 2 to 1010 1 to 1009 exact available from MGC, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 1009/1010
(99 %)
1 diff
(100.0 %id)
BE168962 head_neck .a 3255 to 3538 8 to 291       284/299
(94 %)
6 diff
(98.0 %id)
BE828861 lung_tumor .a 5189 to 5597 24 to 429       406/435
(93 %)
13 diff
(97.1 %id)
BF093592 testis_normal .a 5442 to 5602 178 to 19       160/192
(83 %)
0 diff
(100 %id)
BF335544 colon .a 1374 to 1846 10 to 489       480/509
(94 %)
37 diff
(92.8 %id)
BF904317 marrow .a 1719 to 2001 1 to 283       283/300
(94 %)
18 diff
(94.0 %id)
BF904318 marrow .a 1608 to 2001 403 to 9     Submitted on the opposite strand 395/405
(97 %)
12 diff
(97.1 %id)
BG948983 bocio_tumor .b 1 to 564 8 to 572   tiling clone,   565/572
(98 %)
9 diff
(98.5 %id)
BG998341 head_neck .a 3999 to 4656 9 to 661       653/663
(98 %)
18 diff
(97.3 %id)
BI028298 marrow .a 2384 to 2775 1 to 393       393/393
(100 %)
4 diff
(99.0 %id)
BQ361076 ovary .a 2676 to 2935 19 to 279       261/283
(92 %)
9 diff
(96.9 %id)
BQ361078 ovary .a 2676 to 2935 19 to 279       261/283
(92 %)
9 diff
(96.9 %id)
DA104302 cerebellum .a 729 to 1284 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA114123 cerebellum .a 729 to 1300 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA145862 amygdala .g 3 to 574 2 to 573 exact tiling clone, capped   572/572
(100 %)
1 diff
(99.9 %id)
DA218811 brain .a 729 to 1356 2 to 630   capped   629/629
(100 %)
3 diff
(99.6 %id)
DA227325 brain .a 729 to 1299 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DA232933 brain .a 678 to 1234 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA236437 brain .a 868 to 1441 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA237332 brain .a 727 to 1263 2 to 539   capped   538/538
(100 %)
3 diff
(99.5 %id)
DA334258 hippocampus .a 653 to 1210 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
BX090699 whole brain .a 5500 to 5989 503 to 13       491/503
(97 %)
0 diff
(100 %id)
BX106619 placenta .a 2085 to 2565 481 to 2     Submitted on the opposite strand 480/481
(99 %)
0 diff
(100 %id)
BX118074 heart .d-u 31 to 669 1 to 639       639/639
(100 %)
0 diff
(100 %id)
BX641069 human fetal kidney .c 65 to 5347 1 to 5284 N27K D28* tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 5284/5284
(100 %)
6 diff
(99.9 %id)
Z41616 brain, total brain .a 5725 to 5987 263 to 1       263/263
(100 %)
2 diff
(99.3 %id)
CN277293 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3251 to 3767 1 to 517       517/517
(100 %)
0 diff
(100 %id)
CN286009 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 4161 to 4526 62 to 426       365/438
(83 %)
4 diff
(99.1 %id)
CN292757 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 5659 to 5987 1 to 331       331/331
(100 %)
4 diff
(98.8 %id)
CN350665 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1035 to 1249 1 to 215       215/215
(100 %)
0 diff
(100 %id)
CN350666 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 936 to 1663 1 to 728       728/728
(100 %)
1 diff
(99.9 %id)
CN388373 embryonic stem cells, cell lines H1, H7, andH9 .a 2184 to 2908 1 to 726       726/726
(100 %)
3 diff
(99.6 %id)
CN388374 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 28 to 766 1 to 739 exact tiling clone,   739/739
(100 %)
2 diff
(99.8 %id)
CN388375 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 1 to 481 530 to 50 exact tiling clone, AAA Submitted on the opposite strand 481/481
(100 %)
1 diff
(99.8 %id)
CU452623 epidermis .e 71 to 536 1 to 467       467/474
(98 %)
12 diff
(97.5 %id)
CV025535 mixed .a 787 to 1352 1 to 566       566/566
(100 %)
0 diff
(100 %id)
CV422315 marrow .a 1723 to 2001 1 to 284       284/301
(94 %)
32 diff
(89.4 %id)
AL601202   .a 2642 to 2998 1 to 357       357/357
(100 %)
0 diff
(100 %id)
BX473972   .a 1146 to 1685 1 to 540       540/540
(100 %)
1 diff
(99.9 %id)
BX477165   .h 1 to 427 1 to 427 exact tiling clone,   427/427
(100 %)
6 diff
(98.6 %id)
EL733350 mixed .d-u 87 to 660 1 to 574       574/574
(100 %)
0 diff
(100 %id)
FN051737 breast carcinoma .a 5740 to 5817 79 to 1     Submitted on the opposite strand 79/80
(98 %)
1 diff
(98.8 %id)
FN138957 breast carcinoma .a 5284 to 5398 1 to 116       116/121
(95 %)
3 diff
(97.6 %id)
FN163992 breast carcinoma .a 4241 to 4322 1 to 81       81/81
(100 %)
2 diff
(97.6 %id)
FN165617 breast carcinoma .a 5714 to 5830 4 to 118       115/118
(97 %)
6 diff
(95.0 %id)
GD143355   .j-u 388 to 481 1 to 94   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 94/94
(100 %)
2 diff
(97.9 %id)
GD152910   .e 352 to 613 1 to 262   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 262/262
(100 %)
7 diff
(97.4 %id)
GD154029   .j-u 392 to 481 6 to 94   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 89/94
(94 %)
6 diff
(93.7 %id)
D62523   .a 4111 to 4423 1 to 312       312/312
(100 %)
1 diff
(99.7 %id)
D62701   .a 4110 to 4325 21 to 236       216/236
(91 %)
6 diff
(97.5 %id)
DB533371 hippocampus .a 5572 to 5985 1 to 420     Submitted on the opposite strand 420/420
(100 %)
9 diff
(97.9 %id)
DB539508 hippocampus .a 3487 to 3935 1 to 449     Submitted on the opposite strand 449/449
(100 %)
8 diff
(98.3 %id)
DB473062 hippocampus .a 691 to 1159 1 to 469       469/469
(100 %)
0 diff
(100 %id)
DB541817 hippocampus .a 3462 to 3935 1 to 475     Submitted on the opposite strand 475/475
(100 %)
4 diff
(99.2 %id)
DB563473 hypothalamus .j-u 66 to 481 1 to 416     Submitted on the opposite strand 416/416
(100 %)
9 diff
(97.9 %id)
DB497244 hypothalamus .a 677 to 1168 1 to 492       492/492
(100 %)
1 diff
(99.8 %id)
DB568294 hypothalamus .a 4059 to 4526 1 to 464     Submitted on the opposite strand 464/464
(100 %)
2 diff
(99.6 %id)
BP234732 coronary artery .a 677 to 1258 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA579251   .a 713 to 1265 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
AV721622 hypothalamus .a 4869 to 5583 1 to 711       711/723
(98 %)
25 diff
(96.6 %id)
R37962 whole brain .a 5717 to 5984 284 to 13       272/284
(95 %)
0 diff
(100 %id)
R38885 whole brain .a 5666 to 5989 332 to 7       326/333
(97 %)
0 diff
(100 %id)
T81274 whole brain .a 4893 to 5347 1 to 474       474/481
(98 %)
26 diff
(94.6 %id)
R13140 whole brain .a 4930 to 5254 1 to 340       340/344
(98 %)
22 diff
(93.7 %id)
R40621 whole brain .a 5592 to 5989 407 to 7       401/407
(98 %)
0 diff
(100 %id)
R46147 whole brain .a 5692 to 5989 307 to 7       301/307
(98 %)
0 diff
(100 %id)
R35259 whole brain .a 3087 to 3598 1 to 513     Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 513/513
(100 %)
10 diff
(98.1 %id)
R50930 whole brain .a 4123 to 4526 424 to 14   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 411/417
(98 %)
14 diff
(96.7 %id)
H28930 whole brain .a 4868 to 5280 1 to 415   tiling clone,   415/512
(81 %)
7 diff
(98.7 %id)
H28931 whole brain .a 5520 to 5989 477 to 7       471/485
(97 %)
0 diff
(100 %id)
R21432 placenta .a 3795 to 4154 1 to 377       377/391
(96 %)
17 diff
(95.7 %id)
R79634 placenta .a 2325 to 2535 215 to 1     Submitted on the opposite strand 215/224
(95 %)
19 diff
(91.6 %id)
N32611 placenta .a 895 to 1363 1 to 471     Submitted on the opposite strand 471/481
(97 %)
8 diff
(98.4 %id)
N70822 lung .a 5715 to 5992 278 to 1       278/278
(100 %)
0 diff
(100 %id)
W01456 lung .a 4873 to 5299 1 to 437       437/449
(97 %)
15 diff
(96.7 %id)
W20468 heart .d-u 639 to 1012 375 to 1       375/375
(100 %)
2 diff
(99.5 %id)
W32720 heart .d-u 30 to 231 1 to 202       202/202
(100 %)
1 diff
(99.6 %id)
AA757628 pineal gland .a 895 to 1257 1 to 362     Submitted on the opposite strand 362/362
(100 %)
9 diff
(97.6 %id)
AA234722 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 961 to 1391 427 to 1   fully sequenced,   427/427
(100 %)
8 diff
(98.2 %id)
AA234789 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 597 to 991 1 to 394   fully sequenced,   394/394
(100 %)
1 diff
(99.8 %id)
AA450333   .a 3435 to 3729 1 to 295     Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 295/295
(100 %)
0 diff
(100 %id)
AA450334   .a 4205 to 4506 311 to 14   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 298/298
(100 %)
2 diff
(99.4 %id)
AA668427   .a 2344 to 2560 217 to 1       217/217
(100 %)
4 diff
(98.2 %id)
AA229269   .e 376 to 617 246 to 5   tiling clone,   242/246
(98 %)
0 diff
(100 %id)
AA583618 larynx .b 1000 to 1391 391 to 1   tiling clone,   391/391
(100 %)
2 diff
(99.5 %id)
AA602968   .a 5117 to 5443 429 to 103       327/429
(76 %)
0 diff
(100 %id)
AA854575 parathyroid gland, parathyroid tumor .a 893 to 1331 1 to 439     Submitted on the opposite strand 439/439
(100 %)
3 diff
(99.4 %id)
AA834403 adenocarcinoma, colon .a 895 to 1255 1 to 360       360/360
(100 %)
5 diff
(98.7 %id)
AI073885 pooled .a 895 to 1348 1 to 454     Submitted on the opposite strand 454/454
(100 %)
0 diff
(100 %id)
AA962811 2 pooled tumors (clear cell type), Kidney .a 895 to 1244 1 to 348     Submitted on the opposite strand 348/348
(100 %)
5 diff
(98.6 %id)
AA961638 pooled .a 403 to 841 439 to 1       439/439
(100 %)
8 diff
(98.2 %id)
AI023087 parathyroid gland, parathyroid tumor .a 2153 to 2560 418 to 11   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 408/408
(100 %)
2 diff
(99.6 %id)
AI039519   .a 5676 to 5873 381 to 184       198/381
(51 %)
0 diff
(100 %id)
AI076872 brain, glioblastoma (pooled) .a 4062 to 4506 441 to 1       441/441
(100 %)
2 diff
(99.6 %id)
AI189011 placenta .a 4034 to 4506 468 to 1       468/468
(100 %)
3 diff
(99.4 %id)
AI302534 2 pooled tumors (clear cell type), Kidney .a 2172 to 2559 393 to 7       387/393
(98 %)
0 diff
(100 %id)
AI310758 2 pooled tumors (clear cell type), Kidney .a 5536 to 5989 461 to 8       454/461
(98 %)
0 diff
(100 %id)
AI493045 Kidney .a 5608 to 5987 380 to 1       380/380
(100 %)
1 diff
(99.8 %id)
AI335240 2 pooled tumors (clear cell type), Kidney .a 5398 to 5989 593 to 3       591/593
(99 %)
0 diff
(100 %id)
AI420081 Prostate .e 214 to 614 400 to 1       400/401
(99 %)
1 diff
(99.8 %id)
AI393473 pooled .a 2152 to 2560 419 to 11   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 409/409
(100 %)
1 diff
(99.8 %id)
AI521762 Kidney .a 2204 to 2560 357 to 1       357/357
(100 %)
1 diff
(99.8 %id)
AI470627 Kidney .a 2258 to 2560 304 to 1       304/304
(100 %)
4 diff
(98.7 %id)
AI453003 pooled .j-u 4 to 486 483 to 1       483/483
(100 %)
3 diff
(99.4 %id)
AI580368 Kidney .a 876 to 1261 1 to 386     Submitted on the opposite strand 386/386
(100 %)
0 diff
(100 %id)
AI499523 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 4073 to 4493 417 to 1       417/417
(100 %)
2 diff
(99.6 %id)
AI913194 adenocarcinoma, Pancreas .a 3515 to 3934 434 to 15   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 420/420
(100 %)
4 diff
(99.1 %id)
AI741672 pooled .a 895 to 1297 1 to 403     Submitted on the opposite strand 403/403
(100 %)
0 diff
(100 %id)
AI760063 pooled .e 124 to 617 497 to 1       497/497
(100 %)
21 diff
(95.8 %id)
AI915099 colon, colon tumor, RER+ .a 5548 to 5993 457 to 8       450/457
(98 %)
0 diff
(100 %id)
AI765437 2 pooled tumors (clear cell type), Kidney .a 5398 to 5989 595 to 4   tiling clone,   592/596
(99 %)
0 diff
(100 %id)
AI767972 2 pooled tumors (clear cell type), Kidney .a 5630 to 5989 365 to 6   tiling clone,   360/365
(98 %)
0 diff
(100 %id)
AI769572 2 pooled tumors (clear cell type), Kidney .a 895 to 1336 1 to 443     Submitted on the opposite strand 443/443
(100 %)
2 diff
(99.6 %id)
AI824107 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 801 to 1389 589 to 1       589/589
(100 %)
1 diff
(99.9 %id)
AI830042 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 876 to 1312 1 to 437     Submitted on the opposite strand 437/437
(100 %)
4 diff
(99.1 %id)
AI866729 adenocarcinoma, Pancreas .a 4071 to 4492 422 to 1       422/422
(100 %)
1 diff
(99.8 %id)
AI923528 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 895 to 1424 1 to 530     Submitted on the opposite strand 530/530
(100 %)
1 diff
(99.9 %id)
AW241581 pooled germ cell tumors .a 5511 to 5987 477 to 1       477/477
(100 %)
1 diff
(99.8 %id)
AW237679 Kidney .a 5558 to 5986 430 to 1       430/430
(100 %)
1 diff
(99.8 %id)
AW241940 pooled .a 293 to 841 549 to 1       549/549
(100 %)
1 diff
(99.9 %id)
AW015627   .a 859 to 1237 1 to 379     Submitted on the opposite strand 379/379
(100 %)
0 diff
(100 %id)
AW205091   .a 5577 to 5987 429 to 18   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 412/412
(100 %)
1 diff
(99.8 %id)
AW264795 lung, two pooled squamous cell carcinomas .a 5566 to 5989 425 to 1       425/425
(100 %)
1 diff
(99.8 %id)
AW472912 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .i 87 to 488 406 to 5   tiling clone,   402/406
(99 %)
0 diff
(100 %id)
AW269515 lung, two pooled squamous cell carcinomas .a 3979 to 4513 532 to 2       531/532
(99 %)
0 diff
(100 %id)
AW518379 lymph node, lymphoma, follicular mixed small and largecell .a 4352 to 4623 287 to 12   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 276/278
(99 %)
9 diff
(96.8 %id)
AW470817 2 pooled tumors (clear cell type), Kidney .a 5513 to 5989 485 to 8       478/485
(98 %)
0 diff
(100 %id)
AW629253 pooled .a 339 to 840 503 to 2       502/503
(99 %)
0 diff
(100 %id)
BM986825 mixed .d-u 26 to 508 6 to 489     Submitted on the opposite strand 484/489
(98 %)
6 diff
(98.8 %id)
AW872882 squamous cell carcinoma, tongue .a 3472 to 3934 472 to 10       463/472
(98 %)
0 diff
(100 %id)
BE327017 Kidney .a 5541 to 5987 460 to 14   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 447/447
(100 %)
1 diff
(99.8 %id)
BE465211 Kidney .a 719 to 864 146 to 1       146/146
(100 %)
1 diff
(99.4 %id)
BF438871 pooled .j-u 74 to 486 413 to 1       413/413
(100 %)
0 diff
(100 %id)
BE272563 Kidney, renal cell adenocarcinoma .a 666 to 1267 1 to 603       603/604
(99 %)
3 diff
(99.6 %id)
BE272481 Kidney, renal cell adenocarcinoma .a 666 to 1198 1 to 533       533/533
(100 %)
0 diff
(100 %id)
BF593463 Kidney .g 220 to 572 1 to 353     Submitted on the opposite strand 353/353
(100 %)
0 diff
(100 %id)
BE568411 bladder, carcinoma, cell line .a 3567 to 4246 1 to 660       660/875
(75 %)
34 diff
(96.2 %id)
BE564219 bladder, carcinoma, cell line .d-u 32 to 811 1 to 759       759/767
(98 %)
30 diff
(96.1 %id)
BE564922 bladder, carcinoma, cell line .b 420 to 1081 1 to 666       666/905
(73 %)
29 diff
(96.8 %id)
BE565002 bladder, carcinoma, cell line .b 411 to 1089 1 to 682       682/807
(84 %)
42 diff
(94.8 %id)
BE867922 adenocarcinoma, colon .a 2144 to 2886 1 to 729       729/869
(83 %)
26 diff
(97.1 %id)
BE869617 adenocarcinoma, colon .a 2702 to 3435 19 to 722       704/876
(80 %)
15 diff
(98.3 %id)
BF028671 bladder, carcinoma, cell line .b 455 to 1159 1 to 689       689/860
(80 %)
42 diff
(95.2 %id)
BF246220 brain, glioblastoma .a 3366 to 4106 1 to 739       739/840
(87 %)
48 diff
(94.3 %id)
BF208515 bladder, carcinoma, cell line .d-u 1 to 695 1 to 681   tiling clone,   681/897
(75 %)
44 diff
(95.1 %id)
BF208824 bladder, carcinoma, cell line .b 392 to 1005 1 to 608       608/697
(87 %)
51 diff
(92.7 %id)
BF242280 bone marrow, from acute myelogenous leukemia .f 1 to 484 1 to 492   tiling clone,   492/1176
(41 %)
28 diff
(97.7 %id)
BC005981 Bone marrow, acute myelogenous leukemia .a 2870 to 4526 1 to 1657   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 1657/1657
(100 %)
1 diff
(100.0 %id)
BF241908 bone marrow, from acute myelogenous leukemia .a 2870 to 3453 1 to 586   available from MGC,   586/758
(77 %)
22 diff
(97.1 %id)
BF667084 brain, primitive neuroectoderm .a 3255 to 3925 29 to 685       657/863
(76 %)
31 diff
(96.5 %id)
BF697597 brain, primitive neuroectoderm .a 3905 to 3952 643 to 690       651/818
(79 %)
22 diff
(97.4 %id)
BF679359 Prostate .a 3329 to 3937 1 to 596       596/873
(68 %)
26 diff
(97.1 %id)
BG180419 adenocarcinoma, cell line, Prostate .a 4736 to 5437 1 to 691   tiling clone,   691/927
(74 %)
22 diff
(97.7 %id)
BG287329 bladder, transitional cell papilloma, cell line .d-u 43 to 809 1 to 770       770/954
(80 %)
15 diff
(98.5 %id)
BG324612 Kidney, renal cell adenocarcinoma .a 646 to 1392 1 to 744       744/856
(86 %)
15 diff
(98.3 %id)
BG324903 Kidney, renal cell adenocarcinoma .a 646 to 1252 1 to 605       605/605
(100 %)
2 diff
(99.7 %id)
BG494918 lung, mucoepidermoid carcinoma .a 3396 to 4097 1 to 700       700/700
(100 %)
5 diff
(99.3 %id)
BG679603 skin, squamous cell carcinoma .b 410 to 1341 1 to 943       943/954
(98 %)
40 diff
(95.9 %id)
BG696590 skin .d-u 32 to 774 1 to 745       745/745
(100 %)
10 diff
(98.7 %id)
BG721402 testis .a 686 to 1425 1 to 746       746/859
(86 %)
16 diff
(98.2 %id)
BG772279 testis .a 598 to 1419 1 to 818       818/818
(100 %)
16 diff
(98.1 %id)
BG830402 epithelioid carcinoma cell line, Pancreas .a 870 to 1469 1 to 593       594/593
(100 %)
13 diff
(97.9 %id)
BI560819 testis .g 1 to 705 1 to 708 T13Q V14C P15Q G16V A17P ... tiling clone,   708/837
(84 %)
21 diff
(97.5 %id)
BI667155 brain, hypothalamus .a 672 to 1350 1 to 680       680/681
(99 %)
15 diff
(97.8 %id)
BI668785 brain, hypothalamus .a 672 to 1368 1 to 699       699/700
(99 %)
15 diff
(97.9 %id)
BM018631 astrocytoma grade IV, cell line, brain .b 426 to 1255 1 to 826       826/826
(100 %)
29 diff
(96.5 %id)
BM020484 astrocytoma grade IV, cell line, brain .d-u 48 to 772 1 to 725       725/725
(100 %)
1 diff
(99.9 %id)
BM914030 astrocytoma grade IV, cell line, brain .b 466 to 1031 1 to 567   tiling clone,   567/1273
(44 %)
13 diff
(99.0 %id)
BM914235 astrocytoma grade IV, cell line, brain .b 429 to 1386 1 to 968   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 968/972
(99 %)
43 diff
(95.6 %id)
BQ014864 Chondrosarcoma, Left Pubic Bone .a 5343 to 5985 662 to 19   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 644/644
(100 %)
2 diff
(99.7 %id)
BQ016004 lung, Metastatic Chondrosarcoma .a 3871 to 4506 650 to 19   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 632/632
(100 %)
4 diff
(99.4 %id)
BQ016015 lung, Metastatic Chondrosarcoma .a 3849 to 4506 672 to 19   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 654/654
(100 %)
4 diff
(99.4 %id)
BQ017492 lung, Metastatic Chondrosarcoma .a 5807 to 5987 197 to 17   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 181/181
(100 %)
0 diff
(100 %id)
BQ429910 melanotic melanoma, skin .a 3387 to 4002 1 to 626       626/1019
(61 %)
19 diff
(98.2 %id)
BQ217897 epithelioid carcinoma, Pancreas .a 1686 to 2363 1 to 688       688/988
(69 %)
15 diff
(98.5 %id)
BU195114 melanotic melanoma, skin .a 4043 to 4935 1 to 900   tiling clone,   900/901
(99 %)
20 diff
(97.8 %id)
BU145898 dorsal root ganglia .a 3681 to 4412 33 to 767       735/879
(83 %)
17 diff
(98.1 %id)
BQ720497 sympathetic trunk .a 3535 to 4453 1 to 923       923/924
(99 %)
16 diff
(98.3 %id)
BQ723410 sympathetic trunk .a 3498 to 4411 42 to 954       913/956
(95 %)
19 diff
(98.1 %id)
CX872309 embryonic stem .a 3501 to 4291 1 to 791   tiling clone,   791/791
(100 %)
0 diff
(100 %id)
CB984961 Pooled-Glandular .a 3701 to 4279 1 to 586       586/987
(59 %)
15 diff
(98.5 %id)
CB996608 placenta, pre-eclamptic placenta .a 676 to 1158 25 to 513       489/1171
(41 %)
16 diff
(98.7 %id)
TI_44349224   .g 5 to 705 90 to 793 T13Q V14C P15Q G16V A17P ...     704/922
(76 %)
20 diff
(97.9 %id)
TI_44342838   .a 673 to 1350 77 to 755       679/756
(89 %)
17 diff
(97.8 %id)
TI_44345490   .a 673 to 1368 94 to 791       698/792
(88 %)
17 diff
(97.9 %id)
TI_59389296   .b 427 to 1255 103 to 927       825/825
(100 %)
28 diff
(96.7 %id)
TI_59391271   .d-u 49 to 772 102 to 825       724/724
(100 %)
0 diff
(100 %id)
BP277979   .a 726 to 1309 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BY996493   .a 2925 to 3596 20 to 691       672/691
(97 %)
6 diff
(99.2 %id)
BY996936   .a 3494 to 4168 10 to 684       675/684
(98 %)
6 diff
(99.2 %id)
DA671270   .a 2492 to 3080 2 to 593   capped   592/592
(100 %)
6 diff
(99.0 %id)
DA671469   .a 3871 to 4442 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA672669   .a 689 to 1285 2 to 598   capped   597/597
(100 %)
3 diff
(99.5 %id)
NM_017839.4   .a 606 to 5998 1 to 5393 exact RefSeq,   5393/5395
(99 %)
5 diff
(100.0 %id)
NM_032330.1   .d-u 2 to 1011 1 to 1010 exact RefSeq, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 1010/1010
(100 %)
1 diff
(100.0 %id)
AU132727   .a 2482 to 3230 2 to 746   capped   745/787
(94 %)
11 diff
(98.7 %id)
AU154202   .a 3984 to 4506 523 to 1       523/523
(100 %)
1 diff
(99.9 %id)
DB374236 placenta .a 5520 to 5992 471 to 1       471/476
(98 %)
5 diff
(99.0 %id)
DA863259 placenta .a 729 to 1361 2 to 635   capped   634/634
(100 %)
1 diff
(99.9 %id)
TI_1948086422   .a 787 to 1552 141 to 908       764/1330
(57 %)
21 diff
(98.5 %id)
TI_1948086423   .a 1848 to 2420 709 to 135       575/1370
(41 %)
23 diff
(98.4 %id)
TI_1948086597   .a 787 to 1549 142 to 912       769/1354
(56 %)
19 diff
(98.6 %id)
TI_1948086598   .a 1789 to 2420 765 to 130       636/1389
(45 %)
14 diff
(99.0 %id)
TI_1948086769   .a 787 to 1552 136 to 907       772/1326
(58 %)
23 diff
(98.3 %id)
TI_1948086770   .a 1790 to 2420 764 to 129       636/1419
(44 %)
21 diff
(98.6 %id)
TI_1948237398   .b 454 to 1168 129 to 855       727/1352
(53 %)
6 diff
(99.6 %id)
TI_1948237399   .d-u 76 to 308 125 to 358       234/251
(93 %)
6 diff
(97.7 %id)
TI_1948237400   .b 928 to 1210 408 to 126       283/310
(91 %)
0 diff
(100 %id)
TI_1948237401   .b 503 to 1210 832 to 125       708/1302
(54 %)
0 diff
(100 %id)
TI_1948237625   .b 662 to 1210 1161 to 607     Submitted on the opposite strand 555/1254
(44 %)
0 diff
(100 %id)
TI_1948237843   .d-u 76 to 321 124 to 369       246/262
(93 %)
5 diff
(98.1 %id)
TI_1948238080   .b 454 to 1196 130 to 880       751/1317
(57 %)
6 diff
(99.6 %id)
TI_1948238081   .d-u 76 to 324 128 to 376       249/266
(93 %)
5 diff
(98.2 %id)
TI_1948238083   .b 454 to 1210 885 to 124       762/1367
(55 %)
0 diff
(100 %id)
T36264 thyroid gland .a 5782 to 5987 206 to 1     Submitted on the opposite strand 206/206
(100 %)
0 diff
(100 %id)
DR000925 fetal brain .a 749 to 1497 1 to 749       749/749
(100 %)
5 diff
(99.4 %id)
DB164414 thymus .a 676 to 1254 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
TI_153988904   .a 5479 to 5987 601 to 92   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 510/511
(99 %)
3 diff
(99.5 %id)
TI_159708438   .a 1 to 825 875 to 55   tiling clone,   821/1131
(72 %)
0 diff
(100 %id)
DB214577 trachea .a 678 to 1162 2 to 485   capped   484/484
(100 %)
1 diff
(99.8 %id)
DB224186 trachea .a 729 to 1315 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
DB240395 trachea .a 725 to 1306 2 to 584   capped   583/583
(100 %)
3 diff
(99.5 %id)
BP372436 umbilical cord .b 546 to 1111 1 to 567       567/567
(100 %)
3 diff
(99.5 %id)
BQ184597 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 311 to 684 379 to 1   fully sequenced,   379/379
(100 %)
3 diff
(99.3 %id)
BQ186569 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1 to 662 5 to 666   tiling clone, fully sequenced,   666/666
(100 %)
3 diff
(99.6 %id)
CA748632 Alveolar Macrophage, lung .b 763 to 1390 646 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 628/628
(100 %)
0 diff
(100 %id)
DB277866 uterus .a 683 to 1087 2 to 406   capped   405/405
(100 %)
1 diff
(99.8 %id)
DB278828 uterus .a 678 to 1204 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DB281488 uterus .j-u 1 to 549 2 to 548 K39G E40K N41P P42T H43L ... capped   547/547
(100 %)
2 diff
(99.7 %id)
DB352517 uterus .j-u 3267 to 3829 563 to 1       563/563
(100 %)
0 diff
(100 %id)
DB287875 uterus .a 715 to 1284 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB288019 uterus .a 661 to 1227 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DB289924 uterus .a 678 to 1270 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DB292124 uterus .a 661 to 1210 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA225027 brain .a 3387 to 4002 1 to 626   capped This clone was ignored 626/1019
(61 %)
19 diff
(98.2 %id)
DB305164 brain .a 3387 to 4002 1 to 626     This clone was ignored 626/1019
(61 %)
19 diff
(98.2 %id)
AV716977   .a 1686 to 2363 1 to 688     Suspected internal deletion, this clone was ignored 688/988
(69 %)
15 diff
(98.5 %id)
BP321478 placenta .a 1686 to 2363 1 to 688     Suspected internal deletion, this clone was ignored 688/988
(69 %)
15 diff
(98.5 %id)
TI_1948086256   .a 4043 to 4935 1 to 900   tiling clone, This clone was ignored 900/901
(99 %)
20 diff
(97.8 %id)
TI_1948086257   .a 4043 to 4935 1 to 900   tiling clone, This clone was ignored 900/901
(99 %)
20 diff
(97.8 %id)
BU145898 dorsal root ganglia .a 3681 to 4412 33 to 767       735/879
(83 %)
17 diff
(98.1 %id)
BQ720497 sympathetic trunk .a 3535 to 4453 1 to 923       923/924
(99 %)
16 diff
(98.3 %id)
BQ723410 sympathetic trunk .a 3498 to 4411 42 to 954       913/956
(95 %)
19 diff
(98.1 %id)
CX872309 embryonic stem .a 3501 to 4291 1 to 791   tiling clone,   791/791
(100 %)
0 diff
(100 %id)
CB984961 Pooled-Glandular .a 3701 to 4279 1 to 586       586/987
(59 %)
15 diff
(98.5 %id)
CB996608 placenta, pre-eclamptic placenta .a 676 to 1158 25 to 513       489/1171
(41 %)
16 diff
(98.7 %id)
CB996608 placenta, pre-eclamptic placenta .a 676 to 1158 25 to 513       489/1171
(41 %)
16 diff
(98.7 %id)
TI_44349224   .g 5 to 705 90 to 793 T13Q V14C P15Q G16V A17P ...     704/922
(76 %)
20 diff
(97.9 %id)
TI_44342838   .a 673 to 1350 77 to 755       679/756
(89 %)
17 diff
(97.8 %id)
TI_44345490   .a 673 to 1368 94 to 791       698/792
(88 %)
17 diff
(97.9 %id)
TI_59389296   .b 427 to 1255 103 to 927       825/825
(100 %)
28 diff
(96.7 %id)
TI_59391271   .d-u 49 to 772 102 to 825       724/724
(100 %)
0 diff
(100 %id)
BP277979   .a 726 to 1309 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BY996493   .a 2925 to 3596 20 to 691       672/691
(97 %)
6 diff
(99.2 %id)
BY996936   .a 3494 to 4168 10 to 684       675/684
(98 %)
6 diff
(99.2 %id)
DA671270   .a 2492 to 3080 2 to 593   capped   592/592
(100 %)
6 diff
(99.0 %id)
DA671469   .a 3871 to 4442 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA672669   .a 689 to 1285 2 to 598   capped   597/597
(100 %)
3 diff
(99.5 %id)
NM_017839.4   .a 606 to 5998 1 to 5393 exact RefSeq,   5393/5395
(99 %)
5 diff
(100.0 %id)
NM_032330.1   .d-u 2 to 1011 1 to 1010 exact RefSeq, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 1010/1010
(100 %)
1 diff
(100.0 %id)
AU132727   .a 2482 to 3230 2 to 746   capped   745/787
(94 %)
11 diff
(98.7 %id)
AU154202   .a 3984 to 4506 523 to 1       523/523
(100 %)
1 diff
(99.9 %id)
DB374236 placenta .a 5520 to 5992 471 to 1       471/476
(98 %)
5 diff
(99.0 %id)
DA863259 placenta .a 729 to 1361 2 to 635   capped   634/634
(100 %)
1 diff
(99.9 %id)
TI_1948086422   .a 787 to 1552 141 to 908       764/1330
(57 %)
21 diff
(98.5 %id)
TI_1948086423   .a 1848 to 2420 709 to 135       575/1370
(41 %)
23 diff
(98.4 %id)
TI_1948086597   .a 787 to 1549 142 to 912       769/1354
(56 %)
19 diff
(98.6 %id)
TI_1948086598   .a 1789 to 2420 765 to 130       636/1389
(45 %)
14 diff
(99.0 %id)
TI_1948086769   .a 787 to 1552 136 to 907       772/1326
(58 %)
23 diff
(98.3 %id)
TI_1948086770   .a 1790 to 2420 764 to 129       636/1419
(44 %)
21 diff
(98.6 %id)
TI_1948237398   .b 454 to 1168 129 to 855       727/1352
(53 %)
6 diff
(99.6 %id)
TI_1948237399   .d-u 76 to 308 125 to 358       234/251
(93 %)
6 diff
(97.7 %id)
TI_1948237400   .b 928 to 1210 408 to 126       283/310
(91 %)
0 diff
(100 %id)
TI_1948237401   .b 503 to 1210 832 to 125       708/1302
(54 %)
0 diff
(100 %id)
TI_1948237625   .b 662 to 1210 1161 to 607     Submitted on the opposite strand 555/1254
(44 %)
0 diff
(100 %id)
TI_1948237843   .d-u 76 to 321 124 to 369       246/262
(93 %)
5 diff
(98.1 %id)
TI_1948238080   .b 454 to 1196 130 to 880       751/1317
(57 %)
6 diff
(99.6 %id)
TI_1948238081   .d-u 76 to 324 128 to 376       249/266
(93 %)
5 diff
(98.2 %id)
TI_1948238083   .b 454 to 1210 885 to 124       762/1367
(55 %)
0 diff
(100 %id)
T36264 thyroid gland .a 5782 to 5987 206 to 1     Submitted on the opposite strand 206/206
(100 %)
0 diff
(100 %id)
DR000925 fetal brain .a 749 to 1497 1 to 749       749/749
(100 %)
5 diff
(99.4 %id)
DB164414 thymus .a 676 to 1254 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
TI_153988904   .a 5479 to 5987 601 to 92   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 510/511
(99 %)
3 diff
(99.5 %id)
TI_159708438   .a 1 to 825 875 to 55   tiling clone,   821/1131
(72 %)
0 diff
(100 %id)
DB214577 trachea .a 678 to 1162 2 to 485   capped   484/484
(100 %)
1 diff
(99.8 %id)
DB224186 trachea .a 729 to 1315 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
DB240395 trachea .a 725 to 1306 2 to 584   capped   583/583
(100 %)
3 diff
(99.5 %id)
BP372436 umbilical cord .b 546 to 1111 1 to 567       567/567
(100 %)
3 diff
(99.5 %id)
BQ184597 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 311 to 684 379 to 1   fully sequenced,   379/379
(100 %)
3 diff
(99.3 %id)
BQ184597 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 311 to 684 379 to 1   fully sequenced,   379/379
(100 %)
3 diff
(99.3 %id)
BQ186569 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1 to 662 5 to 666   tiling clone, fully sequenced,   666/666
(100 %)
3 diff
(99.6 %id)
BQ186569 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1 to 662 5 to 666   tiling clone, fully sequenced,   666/666
(100 %)
3 diff
(99.6 %id)
CA748632 Alveolar Macrophage, lung .b 763 to 1390 646 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 628/628
(100 %)
0 diff
(100 %id)
CA748632 Alveolar Macrophage, lung .b 763 to 1390 646 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 628/628
(100 %)
0 diff
(100 %id)
DB277866 uterus .a 683 to 1087 2 to 406   capped   405/405
(100 %)
1 diff
(99.8 %id)
DB278828 uterus .a 678 to 1204 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DB281488 uterus .j-u 1 to 549 2 to 548 K39G E40K N41P P42T H43L ... capped   547/547
(100 %)
2 diff
(99.7 %id)
DB352517 uterus .j-u 3267 to 3829 563 to 1       563/563
(100 %)
0 diff
(100 %id)
DB287875 uterus .a 715 to 1284 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB288019 uterus .a 661 to 1227 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DB289924 uterus .a 678 to 1270 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DB292124 uterus .a 661 to 1210 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f, .g, .h, .i, .j-u, .k-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI