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Gene CAPN13TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
108 supporting clones for gene CAPN13 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC317460 amygdala .a 1 to 540 1 to 541       541/541
(100 %)
1 diff
(99.9 %id)
DC344256 thalamus .a 1 to 490 1 to 490   tiling clone,   490/490
(100 %)
0 diff
(100 %id)
DC316339 amygdala .a 28 to 592 1 to 565       565/565
(100 %)
0 diff
(100 %id)
DC311603 alzheimer cortex .a 31 to 583 1 to 553       553/553
(100 %)
4 diff
(99.3 %id)
DC336713 substantia nigra .a 34 to 601 1 to 568       568/568
(100 %)
0 diff
(100 %id)
BX476842   .a 160 to 736 1 to 578       578/587
(98 %)
4 diff
(99.4 %id)
AK290298 tongue, tumor tissue .a 173 to 2550 1 to 2378 H249Y A280T     2378/2378
(100 %)
3 diff
(99.9 %id)
BX640793 esophagus tumor .a 174 to 2852 1 to 2679 E562G available from DKFZ, AAA   2679/2679
(100 %)
5 diff
(99.9 %id)
DA437167 tongue, tumor tissue .a 174 to 774 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
NM_144575.2   .a 174 to 2852 1 to 2679 exact RefSeq, AAA   2679/2679
(100 %)
0 diff
(100 %id)
BP313917 mammary gland .a 177 to 759 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DB228262 trachea .a 178 to 732 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA631645 Kidney .a 195 to 774 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
AK308037 Kidney .a 197 to 1708 1 to 1513   tiling clone,   1513/1513
(100 %)
3 diff
(99.9 %id)
DC361677 Kidney .a 197 to 760 1 to 564       564/564
(100 %)
1 diff
(99.9 %id)
DA968372 stomach .a 197 to 753 9 to 565   capped   557/557
(100 %)
0 diff
(100 %id)
TI_1320131101   .a 207 to 1217 61 to 1063     Submitted on the opposite strand 1003/1222
(82 %)
20 diff
(98.4 %id)
TI_1320133911   .a 207 to 809 127 to 729     Submitted on the opposite strand 603/729
(82 %)
6 diff
(99.2 %id)
TI_1320131095   .a 207 to 1280 44 to 1112       1069/1245
(85 %)
22 diff
(98.3 %id)
BC117345 Colon, PCR rescued clones .a 213 to 2776 1 to 2564 A280T     2564/2564
(100 %)
3 diff
(99.9 %id)
BC117347 Colon, PCR rescued clones .a 213 to 2776 1 to 2564 A280T tiling clone,   2564/2564
(100 %)
3 diff
(99.9 %id)
BU579691 insulinoma, Pancreas .a 307 to 906 600 to 1       600/604
(99 %)
5 diff
(99.2 %id)
BQ613987 insulinoma, Pancreas .a 327 to 906 580 to 1       580/580
(100 %)
1 diff
(99.9 %id)
BQ130549 insulinoma, Pancreas .a 389 to 906 518 to 1       518/518
(100 %)
1 diff
(99.9 %id)
CD709205 normal nasopharynx .a 473 to 992 38 to 557       520/557
(93 %)
6 diff
(99.0 %id)
BP223388 colon mucosa .a 550 to 1291 1 to 747       747/771
(96 %)
16 diff
(98.0 %id)
TI_1320133113   .a 979 to 2070 5 to 1102       1096/1136
(96 %)
36 diff
(96.9 %id)
TI_1320134841   .a 1116 to 2049 940 to 5       936/1009
(92 %)
19 diff
(98.2 %id)
DB485889 hypothalamus .a 1184 to 1620 1 to 437       437/437
(100 %)
5 diff
(98.9 %id)
DB491314 hypothalamus .a 1184 to 1586 1 to 404       404/408
(99 %)
8 diff
(98.1 %id)
TI_1320134845   .a 1470 to 2423 968 to 16       953/1002
(95 %)
13 diff
(98.8 %id)
BM127691 Islets of Langerhans, Pancreas .a 1570 to 2086 1 to 517       517/517
(100 %)
2 diff
(99.7 %id)
TI_1320134387   .a 1722 to 2437 722 to 6       717/722
(99 %)
1 diff
(99.9 %id)
BE075751 breast .a 1817 to 2088 276 to 5     Submitted on the opposite strand 272/276
(98 %)
1 diff
(99.7 %id)
TI_1320133131   .a 1915 to 2745 9 to 843       835/843
(99 %)
3 diff
(99.7 %id)
TI_149311684   .a 2065 to 2852 866 to 83   AAA   784/989
(79 %)
11 diff
(98.9 %id)
TI_149299184   .a 2069 to 2852 854 to 84   AAA   773/773
(100 %)
20 diff
(97.5 %id)
TI_149303675   .a 2076 to 2852 853 to 80   AAA   774/922
(83 %)
6 diff
(99.4 %id)
BM975419 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2132 to 2852 734 to 17   AAA   719/718
(100 %)
4 diff
(99.5 %id)
BM981640 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2134 to 2852 734 to 17   AAA   718/718
(100 %)
4 diff
(99.5 %id)
TI_149300107   .a 2145 to 2852 788 to 80   AAA   709/818
(86 %)
17 diff
(98.0 %id)
TI_149310335   .a 2172 to 2852 761 to 81   AAA   681/894
(76 %)
4 diff
(99.6 %id)
BM977467 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2173 to 2852 696 to 17   AAA   680/680
(100 %)
2 diff
(99.8 %id)
BU688648 lung, Primary Lung Epithelial Cells .a 2196 to 2852 673 to 17   AAA   657/662
(99 %)
2 diff
(99.7 %id)
AI762355 Kidney .a 2291 to 2852 562 to 1       562/562
(100 %)
1 diff
(99.9 %id)
BM975637 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2297 to 2852 572 to 17   AAA   556/556
(100 %)
0 diff
(100 %id)
CB850799 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2320 to 2852 549 to 17   AAA   533/533
(100 %)
4 diff
(99.3 %id)
BM127385 Islets of Langerhans, Pancreas .a 2339 to 2855 521 to 5   tiling clone,   517/521
(99 %)
0 diff
(100 %id)
BU607675 Human Lung Epithelial cells, lung .a 2388 to 2852 483 to 19   AAA   465/480
(96 %)
2 diff
(99.6 %id)
AW006402 normal prostate, Prostate .a 2401 to 2852 452 to 1       452/452
(100 %)
1 diff
(99.8 %id)
DB554843 hypothalamus .a 2403 to 2850 1 to 446     Submitted on the opposite strand 446/446
(100 %)
10 diff
(97.8 %id)
AW295620   .a 2404 to 2852 464 to 16   AAA   449/449
(100 %)
0 diff
(100 %id)
AI686540 Prostate .a 2411 to 2853 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
AI805392 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 2417 to 2852 461 to 26   AAA   436/436
(100 %)
3 diff
(99.4 %id)
DB561778 hypothalamus .a 2420 to 2850 1 to 432     Submitted on the opposite strand 432/432
(100 %)
5 diff
(98.9 %id)
AA877554 colon, colon tumor RER+ .a 2437 to 2852 415 to 1       415/415
(100 %)
1 diff
(99.8 %id)
BX100184 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 2440 to 2852 427 to 15   AAA   413/413
(100 %)
0 diff
(100 %id)
BF222311 Prostate .a 2440 to 2853 413 to 1       413/413
(100 %)
3 diff
(99.3 %id)
BU950017 Pancreas, Purified pancreatic islet .a 2462 to 2737 1 to 276       276/276
(100 %)
12 diff
(95.7 %id)
FN131506 breast carcinoma .a 2473 to 2572 1 to 96       96/96
(100 %)
6 diff
(93.8 %id)
AI680465 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 2477 to 2852 396 to 21   AAA   376/376
(100 %)
1 diff
(99.8 %id)
AW204040   .a 2483 to 2852 387 to 18   AAA   370/370
(100 %)
1 diff
(99.8 %id)
FN120504 breast carcinoma .a 2491 to 2579 87 to 1     Submitted on the opposite strand 87/88
(98 %)
3 diff
(96.6 %id)
FN135005 breast carcinoma .a 2491 to 2579 89 to 1     Submitted on the opposite strand 89/90
(98 %)
4 diff
(95.6 %id)
FN105308 breast carcinoma .a 2512 to 2578 1 to 67       67/68
(98 %)
2 diff
(97.1 %id)
AI554394 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 2524 to 2852 329 to 1       329/329
(100 %)
0 diff
(100 %id)
FN081406 breast carcinoma .a 2528 to 2627 99 to 1     Submitted on the opposite strand 99/99
(100 %)
1 diff
(99.0 %id)
AW381051 head_neck .a 2557 to 2828 279 to 11       269/286
(94 %)
0 diff
(100 %id)
AW371301 breast .a 2567 to 2818 19 to 270       252/279
(90 %)
6 diff
(97.9 %id)
FN129464 breast carcinoma .a 2585 to 2687 104 to 1     Submitted on the opposite strand 104/109
(95 %)
3 diff
(97.3 %id)
AW088283 ovary, tumor, 5 pooled (see description) .a 2631 to 2852 222 to 1       222/222
(100 %)
0 diff
(100 %id)
AK074418   .b 1 to 2265 3 to 2267 A280T tiling clone, available from FLJ, AAA   2267/2267
(100 %)
5 diff
(99.8 %id)
DN996732 breast cancer, Mammary gland (cancer tissue) .b 15 to 641 1 to 627   tiling clone,   627/627
(100 %)
6 diff
(99.1 %id)
BX103950 colon .b 1836 to 2203 1 to 368   tiling clone,   368/371
(99 %)
3 diff
(99.2 %id)
BP397398 pancreatic islet .b 1839 to 2202 1 to 365     Submitted on the opposite strand 365/365
(100 %)
1 diff
(99.8 %id)
AA502614 colon .b 1868 to 2201 334 to 1       334/334
(100 %)
1 diff
(99.8 %id)
BX647678 Liver .c 1 to 2816 90 to 2905 exact tiling clone, available from DKFZ, AAA   2816/2905
(96 %)
3 diff
(99.9 %id)
CD653793 Embryonic Stem cells .c 179 to 932 12 to 760       749/808
(92 %)
13 diff
(98.4 %id)
DN996155 breast cancer, Mammary gland (cancer tissue) .c 257 to 866 10 to 619       610/619
(98 %)
0 diff
(100 %id)
AK027176 Human lung .c 491 to 2816 1 to 2329   tiling clone, available from FLJ, AAA   2329/2329
(100 %)
7 diff
(99.7 %id)
DA916334 small intestine .d 1 to 571 2 to 572 H72R T84A tiling clone, capped   571/572
(99 %)
4 diff
(99.4 %id)
AK026692 Human lung .e 1 to 2185 1 to 2185 I43T Y115N tiling clone, available from FLJ, AAA   2185/2185
(100 %)
10 diff
(99.6 %id)
BG570594 lung .e 1265 to 1991 1 to 729   AAA   729/746
(97 %)
18 diff
(97.6 %id)
AA554255 germ cell tumor .e 1398 to 1837 440 to 1       440/440
(100 %)
3 diff
(99.4 %id)
AI819780 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 1474 to 2011 539 to 1   tiling clone,   539/539
(100 %)
6 diff
(98.9 %id)
AI687048 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .e 1642 to 2064 423 to 1       423/423
(100 %)
0 diff
(100 %id)
BF509494   .e 1697 to 2185 506 to 18   tiling clone, AAA   489/489
(100 %)
0 diff
(100 %id)
BF509997   .e 1701 to 2185 502 to 18   AAA   485/485
(100 %)
0 diff
(100 %id)
AA633237 colon, colon tumor RER+ .e 1716 to 2068 353 to 1       353/353
(100 %)
1 diff
(99.8 %id)
AI811202 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .e 1727 to 2186 460 to 1       460/460
(100 %)
4 diff
(99.2 %id)
BF510606   .e 1749 to 2185 454 to 18   AAA   437/437
(100 %)
2 diff
(99.6 %id)
AI682008 serous papillary carcinoma, high grade, 2pooled tumors, uterus .e 1761 to 2185 425 to 1       425/425
(100 %)
0 diff
(100 %id)
AI868165 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 1863 to 2185 323 to 1       323/323
(100 %)
0 diff
(100 %id)
AI689298 serous papillary carcinoma, high grade, 2pooled tumors, uterus .f 1 to 391 392 to 1 E11K D77G C80* tiling clone,   392/392
(100 %)
7 diff
(98.3 %id)
BE080416 breast .f 29 to 504 482 to 4 D10G E11*   Submitted on the opposite strand 479/482
(99 %)
4 diff
(99.2 %id)
BE080483 breast .f 51 to 556 511 to 9 exact tiling clone, Submitted on the opposite strand 503/511
(98 %)
0 diff
(100 %id)
TI_149298592   .g 1 to 587 682 to 104 V2C K8N S9Q A10R E11V ... tiling clone,   579/856
(67 %)
12 diff
(98.6 %id)
BU684715 lung, Primary Lung Cystic Fibrosis EpithelialCells .g 131 to 584 472 to 19   AAA   454/454
(100 %)
1 diff
(99.8 %id)
AI821097 colon, colon tumor RER+ .h-u 1 to 480 1 to 480 exact tiling clone,   480/480
(100 %)
1 diff
(99.8 %id)
AI821843 colon, colon tumor RER+ .h-u 253 to 725 473 to 1   tiling clone,   473/473
(100 %)
0 diff
(100 %id)
CN295177 embryonic stem cells, cell lines H1, H7, andH9 .i 1 to 708 5 to 711 exact tiling clone,   711/711
(100 %)
4 diff
(99.5 %id)
AA377104 small intestine Gene CAPN13, variant not shown              
AW973339   Gene CAPN13, variant not shown         Submitted on the opposite strand    
TI_1320133133   Gene CAPN13, variant not shown         This clone was ignored    
BF751150 breast_normal Gene CAPN13, variant not shown         Submitted on the opposite strand    
AA121907   Gene CAPN13, variant not shown         This clone was ignored    
AA121908   Gene CAPN13, variant not shown         This clone was ignored    
BU784976 Pancreas, Purified pancreatic islet Gene CAPN13, variant not shown         This clone was ignored    
BU785238 Pancreas, Purified pancreatic islet Gene CAPN13, variant not shown         This clone was ignored    
DB371724 ovary, tumor tissue Gene CAPN13, variant not shown              
DA812370 ovary, tumor tissue Gene CAPN13, variant not shown       capped      
TI_149298709   Gene CAPN13, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C