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Gene CALM1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
374 representative clones for gene CALM1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK289937 hippocampus .a 1 to 1000 1 to 1000 G5S R172C tiling clone,   1000/1000
(100 %)
2 diff
(99.8 %id)
BP273200   .b 1 to 569 2 to 571   tiling clone,   571/571
(100 %)
11 diff
(98.1 %id)
BQ223097 large cell carcinoma, lung .b 30 to 903 1 to 882   tiling clone,   882/884
(99 %)
13 diff
(98.6 %id)
NM_006888.4   .c 1 to 4253 2 to 4254 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 4254/4254
(100 %)
0 diff
(100 %id)
DA110044 cerebellum .c 1 to 557 2 to 558   tiling clone, capped   557/557
(100 %)
1 diff
(99.9 %id)
TI_44349016   .c 46 to 911 130 to 1000 M125H I126D R127Q E128R A129S ...     871/1005
(86 %)
33 diff
(96.8 %id)
BM786894 stomach .c 46 to 711 1 to 666 exact     666/666
(100 %)
0 diff
(100 %id)
BP194423 brain .c 47 to 628 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA187034 amygdala .c 47 to 586 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
BP374712 umbilical cord .c 48 to 629 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP192763 brain .c 49 to 631 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP209229 cerebellum .c 49 to 629 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP229162 brain .c 49 to 631 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP230069 brain .c 49 to 646 1 to 598       598/598
(100 %)
0 diff
(100 %id)
BJ989990 hepatoblastoma .c 49 to 312 1 to 264   fully sequenced,   264/264
(100 %)
1 diff
(99.7 %id)
BJ995081 hepatoblastoma .c 49 to 648 1 to 600       600/600
(100 %)
0 diff
(100 %id)
BP264202 small intestine .c 49 to 628 1 to 580       580/580
(100 %)
0 diff
(100 %id)
TI_44169941   .c 49 to 892 128 to 970 K76N M77N K78E D79R T80Y ...     843/970
(86 %)
27 diff
(97.3 %id)
CB111623 Liver .c 49 to 647 1 to 599       599/599
(100 %)
0 diff
(100 %id)
BP308247 brain .c 49 to 630 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP309053 brain .c 49 to 636 1 to 588       588/588
(100 %)
0 diff
(100 %id)
BM838032 Ascites, stomach .c 49 to 715 1 to 667 exact     667/667
(100 %)
0 diff
(100 %id)
BM786927 stomach .c 49 to 690 1 to 642       642/642
(100 %)
0 diff
(100 %id)
BM788404 stomach .c 49 to 728 1 to 680 Q136X     680/680
(100 %)
1 diff
(99.9 %id)
BM832702 stomach .c 49 to 763 1 to 715 exact     715/715
(100 %)
0 diff
(100 %id)
BP362558 thalamus .c 49 to 632 1 to 584       584/584
(100 %)
0 diff
(100 %id)
BP371051 testis .c 49 to 634 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BP374785 umbilical cord .c 49 to 631 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA054227 cerebellum .c 50 to 586 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA057910 cerebellum .c 50 to 621 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA064085 cerebellum .c 50 to 614 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA073516 cerebellum .c 50 to 604 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA101854 cerebellum .c 50 to 592 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA103351 cerebellum .c 50 to 582 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA104192 cerebellum .c 50 to 612 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA104802 cerebellum .c 50 to 629 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA108428 cerebellum .c 50 to 608 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA110609 cerebellum .c 50 to 602 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA126178 cerebellum .c 50 to 637 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA188509 amygdala .c 50 to 600 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA195893 amygdala .c 50 to 624 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA196446 amygdala .c 50 to 627 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA277890 corpus callosum .c 50 to 607 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA327316 hippocampus .c 50 to 602 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA335629 hippocampus .c 50 to 644 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA407127 thalamus .c 50 to 593 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA407366 thalamus .c 50 to 613 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA416786 thalamus .c 50 to 617 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA427405 colon .c 50 to 611 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA605951   .c 50 to 614 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB278712 uterus .c 50 to 586 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DB281040 uterus .c 50 to 605 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
U16851 melanoma .c 55 to 160 1 to 106       106/106
(100 %)
0 diff
(100 %id)
CR618763 thymus .c 57 to 780 1 to 724 exact     724/724
(100 %)
0 diff
(100 %id)
BX339621 Placenta Cot 25-normalized .c 57 to 1192 1 to 1113 T80X     1113/1134
(98 %)
30 diff
(97.4 %id)
BM559015 amelanotic melanoma, cell line, skin .c 57 to 802 1 to 751 exact     751/1020
(73 %)
7 diff
(99.4 %id)
BM912455 amelanotic melanoma, cell line, skin .c 58 to 867 1 to 820 exact     820/1109
(73 %)
26 diff
(97.7 %id)
BM728134 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 58 to 615 1 to 558   fully sequenced, Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 558/558
(100 %)
1 diff
(99.9 %id)
BE842524 stomach .c 61 to 172 112 to 1       112/112
(100 %)
0 diff
(100 %id)
BE842532 stomach .c 61 to 174 114 to 1       114/114
(100 %)
0 diff
(100 %id)
BE842533 stomach .c 61 to 160 100 to 1       100/100
(100 %)
0 diff
(100 %id)
BE842534 stomach .c 61 to 174 114 to 1       114/114
(100 %)
0 diff
(100 %id)
BQ477757 insulinoma, Pancreas .c 64 to 673 1 to 610     Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 610/610
(100 %)
6 diff
(99.1 %id)
TI_149295004   .c 64 to 817 829 to 79 exact AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 751/952
(78 %)
10 diff
(99.0 %id)
CR590380 placenta .c 65 to 1562 1 to 1498 exact tiling clone,   1498/1498
(100 %)
0 diff
(100 %id)
BC000454 Lung, small cell carcinoma .c 66 to 1086 1 to 1021 exact available from MGC, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 1021/1021
(100 %)
1 diff
(100.0 %id)
BC008597 Placenta, choriocarcinoma .c 66 to 1086 1 to 1021 exact available from MGC, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 1021/1021
(100 %)
1 diff
(100.0 %id)
BU167594 eye, retinoblastoma .c 66 to 765 1 to 700 exact AAA Possibly primed on the genome, locally A rich (20/22 A in genome downstream of last aligned base) 700/700
(100 %)
0 diff
(100 %id)
CR591035 Placenta Cot 25-normalized .c 67 to 1530 1 to 1464 exact     1464/1464
(100 %)
0 diff
(100 %id)
CR604747 T cells (Jurkat cell line) .c 67 to 1543 1 to 1477 exact     1477/1477
(100 %)
0 diff
(100 %id)
CR619428 Placenta Cot 25-normalized .c 67 to 1543 1 to 1477 exact     1477/1477
(100 %)
0 diff
(100 %id)
BX441861 brain, fetal brain .c 67 to 1111 1 to 1017 exact     1017/1024
(99 %)
42 diff
(95.9 %id)
BX405134 T cells (Jurkat cell line) .c 67 to 848 1 to 765 exact fully sequenced,   765/765
(100 %)
3 diff
(99.7 %id)
CR595745 T cells (Jurkat cell line) Cot10-normalized .c 69 to 890 1 to 822 exact     822/822
(100 %)
0 diff
(100 %id)
CR626701 Placenta Cot 25-normalized .c 80 to 1543 1 to 1464 exact     1464/1464
(100 %)
0 diff
(100 %id)
DA428184 colon .c 85 to 649 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA321104 hippocampus .c 89 to 637 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
BX442357 brain, fetal brain .c 95 to 1146 1 to 1044 exact     1044/1047
(99 %)
11 diff
(99.0 %id)
BU683515 lung .c 100 to 817 735 to 19 exact AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 717/717
(100 %)
8 diff
(98.9 %id)
M27319 Liver .c 161 to 959 1 to 799 exact     799/799
(100 %)
2 diff
(99.8 %id)
TI_149301471   .c 176 to 1093 928 to 19 I10M A11L E12N F13Q K14G ...     910/989
(92 %)
13 diff
(98.7 %id)
CA427867 Bone, Subchondral Bone .c 238 to 941 722 to 19 A16T AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 704/704
(100 %)
1 diff
(99.9 %id)
AW151217 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 246 to 765 520 to 1 exact     520/520
(100 %)
0 diff
(100 %id)
BT006818   .c 248 to 695 1 to 448       448/450
(99 %)
1 diff
(99.8 %id)
BJ989991 hepatoblastoma .c 251 to 748 497 to 1   fully sequenced,   497/497
(100 %)
0 diff
(100 %id)
BG756131 B-cells, primary B-cells from tonsils (cell line) .c 258 to 1092 1 to 836       836/849
(98 %)
19 diff
(97.8 %id)
BP211378 cerebrum .c 274 to 765 1 to 492   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 492/494
(99 %)
1 diff
(99.8 %id)
EC465842 Prostate .c 300 to 397 98 to 1       98/98
(100 %)
0 diff
(100 %id)
EC495075 Prostate .c 300 to 397 98 to 1       98/98
(100 %)
0 diff
(100 %id)
EC495082 Prostate .c 300 to 397 98 to 1       98/98
(100 %)
0 diff
(100 %id)
EC582413 Prostate .c 301 to 397 97 to 1       97/97
(100 %)
0 diff
(100 %id)
DB574082 hypothalamus .c 304 to 765 1 to 462     Submitted on the opposite strand 462/462
(100 %)
0 diff
(100 %id)
BQ427695 melanotic melanoma, skin .c 305 to 765 1 to 461   AAA Possibly primed on the genome, locally A rich (20/22 A in genome downstream of last aligned base) 461/461
(100 %)
0 diff
(100 %id)
CB529370 Aveolar Macrophage, lung .c 309 to 1086 796 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 778/778
(100 %)
0 diff
(100 %id)
TI_149287669   .c 319 to 1059 801 to 61   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 741/1108
(66 %)
9 diff
(99.2 %id)
DR762035 embryonic stem .c 321 to 1174 1 to 854       854/854
(100 %)
0 diff
(100 %id)
DB574654 hypothalamus .c 323 to 765 1 to 443     Submitted on the opposite strand 443/443
(100 %)
0 diff
(100 %id)
BP208383 cerebellum .c 338 to 914 1 to 577       577/582
(99 %)
1 diff
(99.9 %id)
CX785366 human embryonic stem cells .c 342 to 1172 1 to 831       831/831
(100 %)
0 diff
(100 %id)
DR156453 human embryonic stem cells differentiated toan early endodermal cell type .c 370 to 1073 1 to 704       704/704
(100 %)
0 diff
(100 %id)
DB482306 hippocampus .c 372 to 868 1 to 497       497/497
(100 %)
0 diff
(100 %id)
BM549554 melanotic melanoma, skin .c 379 to 1409 1 to 1043       1043/1105
(94 %)
31 diff
(97.2 %id)
AL120293 amygdala .c 464 to 903 1 to 440       440/440
(100 %)
0 diff
(100 %id)
DA319571 hippocampus .c 473 to 1017 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
W65332 heart .c 473 to 699 1 to 226   fully sequenced,   226/226
(100 %)
1 diff
(99.6 %id)
BM761597 lymph node, stomach .c 476 to 1049 1 to 574       574/574
(100 %)
0 diff
(100 %id)
BM844760 lymph node, stomach .c 476 to 1025 1 to 550       550/550
(100 %)
0 diff
(100 %id)
DR422379 eye, Pterygium .c 480 to 1077 1 to 598       598/598
(100 %)
0 diff
(100 %id)
FN065210 breast carcinoma .c 485 to 559 75 to 1     Submitted on the opposite strand 75/75
(100 %)
0 diff
(100 %id)
BU581272 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .c 491 to 1072 582 to 1       582/582
(100 %)
0 diff
(100 %id)
DA249220 brain .c 515 to 1120 2 to 607   capped   606/606
(100 %)
0 diff
(100 %id)
CN354216 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 520 to 1222 1 to 704       704/704
(100 %)
1 diff
(99.9 %id)
CB242639 Human Lung Epithelial cells, lung .c 527 to 1052 19 to 544   AAA Submitted on the opposite strand 526/526
(100 %)
0 diff
(100 %id)
TI_57191090   .c 530 to 1372 54 to 899       846/846
(100 %)
5 diff
(99.5 %id)
AA039463 heart .c 542 to 699 1 to 159   fully sequenced, Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 159/159
(100 %)
0 diff
(100 %id)
AW301226 Kidney .c 549 to 941 393 to 1       393/393
(100 %)
0 diff
(100 %id)
F08797 brain, total brain .c 557 to 936 1 to 380       380/380
(100 %)
0 diff
(100 %id)
AU185119 skin .c 582 to 746 165 to 1       165/165
(100 %)
0 diff
(100 %id)
BM680686 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 585 to 1086 520 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 502/502
(100 %)
0 diff
(100 %id)
DB550677 hippocampus .c 595 to 1086 1 to 492     Submitted on the opposite strand 492/492
(100 %)
0 diff
(100 %id)
BQ084184 stomach .c 602 to 1038 1 to 437       437/437
(100 %)
0 diff
(100 %id)
BI438647 Pancreas, Purified pancreatic islet .c 603 to 765 163 to 1       163/163
(100 %)
0 diff
(100 %id)
CB155557 brain .c 604 to 1216 1 to 613       613/613
(100 %)
0 diff
(100 %id)
DA113172 cerebellum .c 605 to 1175 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
F08188 brain, total brain .c 607 to 936 1 to 330       330/330
(100 %)
0 diff
(100 %id)
H77337 liver and spleen .c 609 to 766 1 to 158       158/158
(100 %)
0 diff
(100 %id)
BP331981 renal proximal tubule .c 610 to 1189 1 to 580       580/580
(100 %)
0 diff
(100 %id)
R70835 placenta .c 614 to 766 1 to 153       153/153
(100 %)
0 diff
(100 %id)
DB166960 kidney, tumor tissue .c 621 to 1187 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BM152899 leukopheresis .c 634 to 1116 1 to 483       483/483
(100 %)
0 diff
(100 %id)
DA309317 hippocampus .c 638 to 1203 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB219181 trachea .c 639 to 1182 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
AA296205 umbilical vein .c 643 to 925 1 to 283       283/283
(100 %)
0 diff
(100 %id)
AA039464 heart .c 651 to 1086 446 to 11   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 436/436
(100 %)
0 diff
(100 %id)
W61315 heart .c 652 to 1060 409 to 1   fully sequenced,   409/409
(100 %)
0 diff
(100 %id)
DA123303 cerebellum .c 678 to 830 2 to 154   capped   153/153
(100 %)
0 diff
(100 %id)
TI_182940164   .c 687 to 1587 974 to 87   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 888/980
(90 %)
20 diff
(98.0 %id)
TI_154137689   .c 701 to 1454 77 to 820   AAA   744/836
(88 %)
45 diff
(94.7 %id)
CD678699 eye, Trabecular meshwork .c 765 to 1334 1 to 570       570/570
(100 %)
0 diff
(100 %id)
BU188852 melanotic melanoma, skin .c 768 to 1452 1 to 692       692/931
(74 %)
14 diff
(98.5 %id)
TI_149304744   .c 768 to 1587 892 to 80   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 813/940
(86 %)
10 diff
(99.0 %id)
BQ187627 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 768 to 1086 1 to 319   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 319/319
(100 %)
0 diff
(100 %id)
DA094854 cerebellum .c 770 to 1328 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA106988 cerebellum .c 773 to 1352 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
BP418412 small intestine .c 782 to 1309 1 to 528     Submitted on the opposite strand 528/528
(100 %)
0 diff
(100 %id)
BG250679 adenocarcinoma, cell line, Liver .c 783 to 1561 1 to 778       778/834
(93 %)
15 diff
(98.3 %id)
BP361490 thalamus .c 791 to 1372 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BX405133 T cells (Jurkat cell line) .c 818 to 1531 721 to 14   fully sequenced,   708/721
(98 %)
2 diff
(99.8 %id)
DV460074 cochlea, ear .c 837 to 933 1 to 97       97/97
(100 %)
0 diff
(100 %id)
BE552127 Kidney .c 849 to 1081 233 to 1       233/233
(100 %)
0 diff
(100 %id)
CN480740 Aveolar Macrophage, lung .c 893 to 1587 713 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 695/695
(100 %)
1 diff
(99.9 %id)
BY998745   .c 895 to 1055 1 to 161     Submitted on the opposite strand 161/161
(100 %)
0 diff
(100 %id)
BM314621 Pancreas, Purified pancreatic islet .c 897 to 1445 1 to 549       549/549
(100 %)
0 diff
(100 %id)
CR611512 Placenta Cot 25-normalized .c 897 to 1590 1 to 694       694/694
(100 %)
0 diff
(100 %id)
BX537677 human fetal brain .c 912 to 4240 1 to 3333   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 3333/3333
(100 %)
6 diff
(99.9 %id)
DA112607 cerebellum .c 914 to 1518 2 to 606   capped   605/605
(100 %)
0 diff
(100 %id)
DA224597 brain .c 923 to 1452 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DA408411 thalamus .c 928 to 1496 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
BQ477343 insulinoma, Pancreas .c 933 to 1587 674 to 20   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 655/655
(100 %)
0 diff
(100 %id)
AA441974   .c 938 to 1298 1 to 361   fully sequenced,   361/361
(100 %)
0 diff
(100 %id)
DA123677 cerebellum .c 939 to 1466 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
CD676577 eye, Trabecular meshwork .c 962 to 1554 1 to 593       593/593
(100 %)
0 diff
(100 %id)
AA488568   .c 976 to 1471 1 to 496   fully sequenced, Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 496/496
(100 %)
0 diff
(100 %id)
BI030238 marrow .c 1015 to 1323 309 to 1       309/309
(100 %)
0 diff
(100 %id)
AA761164 germinal center B cell .c 1063 to 1587 535 to 11   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 525/525
(100 %)
0 diff
(100 %id)
DA119397 cerebellum .c 1116 to 1652 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
CB243756 Human Lung Epithelial cells, lung .c 1183 to 1573 23 to 414   AAA Submitted on the opposite strand 392/423
(92 %)
9 diff
(97.9 %id)
AA037823 heart .c 1204 to 1500 1 to 301   fully sequenced,   301/301
(100 %)
0 diff
(100 %id)
DA116239 cerebellum .c 1218 to 1784 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
AA441975   .c 1268 to 1586 318 to 1   fully sequenced,   318/318
(100 %)
1 diff
(99.7 %id)
BX648223 Liver .c 1362 to 4240 1 to 2874   available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 2874/2874
(100 %)
13 diff
(99.6 %id)
AA488429   .c 1441 to 1587 201 to 55   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 147/147
(100 %)
0 diff
(100 %id)
AA037824 heart .c 1470 to 1870 405 to 1   tiling clone, fully sequenced,   405/405
(100 %)
1 diff
(99.8 %id)
TI_149307347   .c 1481 to 2315 928 to 102       827/1035
(79 %)
0 diff
(100 %id)
F05082 brain, total brain .c 1557 to 1870 314 to 1       314/314
(100 %)
0 diff
(100 %id)
F04428 brain, total brain .c 1592 to 1870 279 to 1       279/279
(100 %)
0 diff
(100 %id)
U16850 melanoma .c 1865 to 4246 1 to 2383   tiling clone,   2383/2383
(100 %)
1 diff
(100.0 %id)
DA306959 hippocampus .c 1906 to 2482 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA158003 amygdala .c 1953 to 2526 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB169055 kidney, tumor tissue .c 2101 to 2675 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA164057 amygdala .c 2106 to 2670 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA147525 amygdala .c 2108 to 2678 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BM876266 insulinoma, Pancreas .c 2124 to 2631 1 to 508     Submitted on the opposite strand 508/508
(100 %)
3 diff
(99.5 %id)
BM873838   .c 2138 to 2285 148 to 1     Submitted on the opposite strand 148/148
(100 %)
0 diff
(100 %id)
AI698169 carcinoid, lung .c 2140 to 2682 1 to 543     Submitted on the opposite strand 543/543
(100 %)
0 diff
(100 %id)
DA146733 amygdala .c 2150 to 2720 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA167638 amygdala .c 2162 to 2716 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BJ992586 hepatoblastoma .c 2170 to 2709 1 to 540       540/540
(100 %)
0 diff
(100 %id)
DA167301 amygdala .c 2205 to 2785 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA349644 substantia nigra .c 2216 to 2799 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
BM928061 hepatocellular carcinoma, cell line, Liver .c 2232 to 3107 1 to 890       890/1072
(83 %)
31 diff
(97.2 %id)
BQ064549 lymph, lymphoma, cell line .c 2232 to 3045 1 to 815       815/985
(82 %)
3 diff
(99.7 %id)
BQ648519 hepatocellular carcinoma, cell line, Liver .c 2232 to 2982 1 to 753       753/920
(81 %)
15 diff
(98.4 %id)
BQ644110 hepatocellular carcinoma, cell line, Liver .c 2232 to 3081 1 to 855       855/939
(91 %)
15 diff
(98.5 %id)
BQ652585 hepatocellular carcinoma, cell line, Liver .c 2232 to 3105 1 to 880       880/927
(94 %)
17 diff
(98.2 %id)
DA270981 caudate nucleus .c 2332 to 2905 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA131848 alzheimer cortex .c 2346 to 2880 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DA137655 alzheimer cortex .c 2375 to 2932 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BQ067830 brain .c 2375 to 3253 1 to 891       891/1062
(83 %)
25 diff
(97.7 %id)
BJ992587 hepatoblastoma .c 3685 to 4224 540 to 1       540/540
(100 %)
9 diff
(98.4 %id)
BM876525 insulinoma, Pancreas .c 3711 to 4173 470 to 8     Submitted on the opposite strand 463/470
(98 %)
0 diff
(100 %id)
BF975660 B-cells, primary B-cells from tonsils (cell line) .d 1 to 797 1 to 797 D96* tiling clone,   797/917
(86 %)
21 diff
(97.8 %id)
BC007965 Primary B-Cells from Tonsils .d 2 to 1064 1 to 1061 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 1061/1061
(100 %)
2 diff
(99.9 %id)
NM_001166106.1   .d 2 to 4231 1 to 4230 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 4230/4230
(100 %)
0 diff
(100 %id)
BF662846 B-cells, primary B-cells from tonsils (cell line) .d 9 to 511 8 to 507       500/973
(51 %)
25 diff
(97.5 %id)
AY189287   .e 1 to 2648 1 to 2647 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 2647/2648
(99 %)
9 diff
(99.7 %id)
DB112564 thymus .e 58 to 628 2 to 583   capped   582/582
(100 %)
21 diff
(96.4 %id)
BF033721 adenocarcinoma, ovary .e 241 to 361 1 to 121       121/121
(100 %)
8 diff
(93.4 %id)
DA836837 placenta .e 864 to 1419 2 to 557   tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
BX483234   .e 900 to 1406 1 to 507       507/507
(100 %)
0 diff
(100 %id)
BX107728 liver and spleen .e 977 to 1749 1 to 774       774/774
(100 %)
5 diff
(99.4 %id)
CU444601 epidermis .e 1133 to 1897 12 to 776       765/776
(98 %)
6 diff
(99.3 %id)
CU446484 epidermis .e 1133 to 1875 12 to 754   tiling clone,   743/754
(98 %)
6 diff
(99.3 %id)
CU446632 epidermis .e 1133 to 1905 12 to 784       773/784
(98 %)
6 diff
(99.3 %id)
CN290954 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 1235 to 1928 1 to 694       694/694
(100 %)
2 diff
(99.8 %id)
BI023353 marrow .e 1637 to 1897 275 to 14       262/275
(95 %)
0 diff
(100 %id)
BF328368 breast_normal .e 1895 to 2110 222 to 8       215/222
(96 %)
0 diff
(100 %id)
CV319879 testis_normal .e 1927 to 2060 22 to 152       131/152
(86 %)
6 diff
(96.1 %id)
CV319880 testis_normal .e 1927 to 2128 22 to 221       200/221
(90 %)
6 diff
(97.3 %id)
BF083987 colon .e 2097 to 2374 21 to 299       278/299
(92 %)
10 diff
(96.7 %id)
BM787287 stomach .f 1 to 588 1 to 588 R102K tiling clone,   588/588
(100 %)
2 diff
(99.7 %id)
DA094151 cerebellum .f 2 to 568 2 to 568 exact tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
DA115301 cerebellum .f 2 to 540 2 to 541 exact capped   540/540
(100 %)
2 diff
(99.7 %id)
DA235323 brain .f 2 to 585 2 to 585 exact capped   584/584
(100 %)
1 diff
(99.9 %id)
DA317027 hippocampus .f 2 to 547 2 to 547 exact capped   546/546
(100 %)
1 diff
(99.9 %id)
DA451658 tongue, tumor tissue .f 2 to 569 2 to 569 exact capped   568/568
(100 %)
1 diff
(99.9 %id)
DA797880 brain .f 2 to 543 2 to 543 exact capped   542/542
(100 %)
1 diff
(99.9 %id)
DB139916 thymus .f 2 to 503 2 to 504   capped   503/503
(100 %)
3 diff
(99.5 %id)
DB145929 thymus .f 2 to 554 2 to 555 Q91A M92N C93V K94Q D95R ... capped   554/554
(100 %)
3 diff
(99.5 %id)
DA398639 thalamus .f 6 to 571 2 to 567 exact capped   566/566
(100 %)
1 diff
(99.9 %id)
DA474435   .g 1 to 553 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
CR592381 neuroblastoma .h 1 to 1420 1 to 1420 exact tiling clone,   1420/1420
(100 %)
0 diff
(100 %id)
DA324470 hippocampus .i 1 to 530 2 to 531 exact tiling clone, capped   530/533
(99 %)
1 diff
(99.9 %id)
AJ712811 bone marrow .j 1 to 438 1 to 439 exact tiling clone,   439/439
(100 %)
1 diff
(99.8 %id)
DA488753 brain .k-u 1 to 574 2 to 575   tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
BQ888966 dorsal root ganglia .k-u 178 to 1089 1 to 912       912/914
(99 %)
10 diff
(99.0 %id)
BI772654 pooled lung and spleen .k-u 238 to 1031 1 to 805       805/1044
(77 %)
27 diff
(97.5 %id)
TI_57181891   .k-u 238 to 1031 1 to 805       805/1044
(77 %)
27 diff
(97.5 %id)
BF090312 nervous_normal .k-u 268 to 519 306 to 54       253/306
(82 %)
0 diff
(100 %id)
AI372650   .k-u 277 to 760 1 to 483       483/483
(100 %)
6 diff
(98.8 %id)
W25822 eye, retina .k-u 301 to 723 460 to 34       427/546
(78 %)
0 diff
(100 %id)
CD515289 White Matter .k-u 326 to 1178 1 to 856       856/877
(97 %)
4 diff
(99.6 %id)
BY994675   .k-u 346 to 996 17 to 667       651/667
(97 %)
6 diff
(99.2 %id)
Z42124 brain, total brain .k-u 347 to 647 1 to 301       301/301
(100 %)
1 diff
(99.7 %id)
AW298776   .k-u 428 to 735 11 to 317     Submitted on the opposite strand 307/317
(96 %)
6 diff
(98.2 %id)
TI_159700417   .k-u 434 to 1367 67 to 998 I27S I30X I35S I40L   Submitted on the opposite strand 932/1045
(89 %)
22 diff
(97.9 %id)
CB054983 brain, glioblastoma (pooled) .k-u 436 to 1045 10 to 619     Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 610/619
(98 %)
9 diff
(98.6 %id)
DB503419 hypothalamus .k-u 465 to 942 1 to 478       478/478
(100 %)
1 diff
(99.8 %id)
TI_45211143   .k-u 499 to 1408 122 to 1032 C4A L8W V9C S10L F11S ...     911/1038
(87 %)
56 diff
(94.7 %id)
DB498120 hypothalamus .k-u 501 to 1005 1 to 506       506/506
(100 %)
3 diff
(99.5 %id)
BU149273 sympathetic trunk .k-u 526 to 1401 1 to 881 N31M A32H C33V L34* tiling clone,   881/884
(99 %)
18 diff
(98.0 %id)
BG939027 Bone, Hip .k-u 544 to 864 8 to 328       321/328
(97 %)
6 diff
(98.2 %id)
EL955052 eyeball .k-u 550 to 1093 21 to 562       542/562
(96 %)
6 diff
(99.0 %id)
BF813024 colon_ins .k-u 624 to 828 240 to 34     Submitted on the opposite strand 207/240
(86 %)
0 diff
(100 %id)
CB963277 Blood vessels - aorta, basilar and artery .k-u 664 to 1410 1 to 761 exact     761/802
(94 %)
21 diff
(97.4 %id)
CB159028 Liver .k-u 690 to 1267 578 to 1 exact   Submitted on the opposite strand 578/578
(100 %)
0 diff
(100 %id)
BF963839 nervous_normal .k-u 695 to 814 124 to 4       121/124
(97 %)
0 diff
(100 %id)
ES312705 beard hair, skin .k-u 700 to 828 1 to 129       129/129
(100 %)
1 diff
(99.3 %id)
BE762518 nervous_tumor .k-u 747 to 1056 310 to 1       310/310
(100 %)
0 diff
(100 %id)
AA281518 germinal center B cell .k-u 842 to 1182 343 to 1     Submitted on the opposite strand 343/343
(100 %)
3 diff
(99.2 %id)
BQ879282 dorsal root ganglia .k-u 863 to 1740 1 to 881 exact     881/890
(98 %)
13 diff
(98.6 %id)
AW163770 brain, frontal lobe .k-u 879 to 1266 1 to 388 exact     388/388
(100 %)
0 diff
(100 %id)
BF955937 nervous_normal .k-u 910 to 1306 397 to 1 exact     397/397
(100 %)
3 diff
(99.3 %id)
CA397083 eye, RPE/choroid .k-u 927 to 1562 1 to 636 exact     636/636
(100 %)
0 diff
(100 %id)
TI_45214426   .k-u 928 to 1818 116 to 997 N2E     882/1047
(84 %)
6 diff
(99.5 %id)
TI_44346263   .k-u 928 to 1760 83 to 906 exact     824/908
(90 %)
6 diff
(99.4 %id)
BM705768 eye, lens .k-u 929 to 1476 1 to 548 exact fully sequenced, Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 548/548
(100 %)
0 diff
(100 %id)
BI601055 brain, hypothalamus .k-u 930 to 1818 1 to 880 N2E available from MGC,   880/930
(94 %)
6 diff
(99.4 %id)
EL949861 eyeball .k-u 932 to 1291 1 to 359 L8*     359/359
(100 %)
8 diff
(97.8 %id)
BC042831 Brain, hypothalamus .k-u 935 to 1855 1 to 921 exact available from MGC, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 921/922
(99 %)
2 diff
(99.8 %id)
BY996201   .k-u 942 to 1586 15 to 659 exact     645/659
(97 %)
6 diff
(99.1 %id)
TI_149302707   .k-u 945 to 1850 952 to 63 N2E F11X L14X Y21* AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 890/986
(90 %)
25 diff
(97.5 %id)
TI_149287012   .k-u 949 to 1856 970 to 81 N2S F3V T5L L6S S7P ... AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 890/1160
(76 %)
49 diff
(95.8 %id)
BU177702 melanotic melanoma, skin .k-u 981 to 1838 1 to 864 exact     864/869
(99 %)
9 diff
(99.0 %id)
TI_154109950   .k-u 994 to 1845 895 to 54 N2H F3X C4H T5W L6C ... AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 842/971
(86 %)
13 diff
(98.7 %id)
TI_149300392   .k-u 997 to 1856 925 to 81 N2X F3L C4V T5S L6F ... AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 845/952
(88 %)
18 diff
(98.2 %id)
FN050747 breast carcinoma .k-u 1003 to 1103 1 to 101       101/101
(100 %)
1 diff
(99.1 %id)
FN084316 breast carcinoma .k-u 1018 to 1098 1 to 79       79/80
(98 %)
4 diff
(95.0 %id)
BG566037 Liver .k-u 1030 to 1741 1 to 712 exact     712/712
(100 %)
3 diff
(99.6 %id)
T07176   .k-u 1031 to 1272 246 to 5 N2X T5X N13X     242/253
(95 %)
0 diff
(100 %id)
BQ722054 sympathetic trunk .k-u 1038 to 1807 1 to 776 exact     776/926
(83 %)
9 diff
(99.1 %id)
BG532345 embryonal carcinoma, testis .k-u 1045 to 1812 1 to 767 exact     767/770
(99 %)
9 diff
(98.9 %id)
BE157212 head_neck .k-u 1055 to 1644 605 to 17 exact   Submitted on the opposite strand 589/607
(97 %)
0 diff
(100 %id)
W28510 eye, retina .k-u 1067 to 1437 378 to 9 exact     370/400
(92 %)
11 diff
(97.3 %id)
CB163344 Liver .k-u 1082 to 1687 1 to 606 exact     606/606
(100 %)
0 diff
(100 %id)
TI_149292403   .k-u 1083 to 1858 870 to 109 N2C F3T C4L T5H L6C ...     762/995
(76 %)
0 diff
(100 %id)
EL949158 eyeball .k-u 1084 to 1498 11 to 423 L8Y V9G S10V G12R N13Q ...     413/423
(97 %)
6 diff
(98.6 %id)
BF963659 nervous_normal .k-u 1094 to 1514 427 to 6 exact     422/427
(98 %)
0 diff
(100 %id)
CN478719 Human Lung Epithelial cells, lung .k-u 1095 to 1850 771 to 19 N2X F3C C4T T5L L6S ... AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 753/753
(100 %)
4 diff
(99.5 %id)
BE080194 breast .k-u 1098 to 1708 612 to 1 N13H   Submitted on the opposite strand 612/612
(100 %)
4 diff
(99.4 %id)
BE813487 breast_normal .k-u 1098 to 1650 560 to 7 exact     554/560
(98 %)
0 diff
(100 %id)
AI372649   .k-u 1103 to 1541 439 to 1 N2X V9X G12A L14X Y26X ...     439/439
(100 %)
2 diff
(99.6 %id)
TI_151752768   .k-u 1104 to 1641 649 to 113 F3S F25S AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 537/631
(85 %)
13 diff
(98.0 %id)
TI_149285277   .k-u 1113 to 1850 820 to 86 N2E V9C S10L F11S G12X ... AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 735/792
(92 %)
6 diff
(99.3 %id)
BM705641 eye, lens .k-u 1113 to 1439 1 to 327 exact   Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 327/327
(100 %)
0 diff
(100 %id)
BE813745 breast_normal .k-u 1131 to 1711 579 to 1       579/579
(100 %)
7 diff
(98.8 %id)
CB054982 brain, glioblastoma (pooled) .k-u 1138 to 1856 745 to 27   tiling clone, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 719/719
(100 %)
0 diff
(100 %id)
AA287295 germinal center B cell .k-u 1155 to 1502 1 to 348   fully sequenced,   348/348
(100 %)
0 diff
(100 %id)
TI_149281912   .k-u 1158 to 1856 788 to 92   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 697/700
(99 %)
5 diff
(99.3 %id)
BM984808 lung .k-u 1174 to 1850 694 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 676/676
(100 %)
3 diff
(99.6 %id)
BM980856 lung, Primary Lung Cystic Fibrosis EpithelialCells .k-u 1176 to 1850 693 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 675/675
(100 %)
4 diff
(99.5 %id)
BU626895 Alveolar Macrophage, lung .k-u 1180 to 1856 695 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 677/677
(100 %)
1 diff
(99.9 %id)
FN149286 breast carcinoma .k-u 1194 to 1268 1 to 74       74/74
(100 %)
3 diff
(96.0 %id)
BF961630 nervous_normal .k-u 1205 to 1563 363 to 6       358/363
(98 %)
0 diff
(100 %id)
BF963320 nervous_normal .k-u 1205 to 1786 578 to 1       578/578
(100 %)
0 diff
(100 %id)
TI_149284200   .k-u 1210 to 1819 731 to 122       610/896
(68 %)
0 diff
(100 %id)
TI_154150294   .k-u 1210 to 1850 757 to 117   AAA Submitted on the opposite strand 641/714
(89 %)
11 diff
(98.5 %id)
BI033924 nervous_normal .k-u 1213 to 1777 564 to 1       564/565
(99 %)
11 diff
(98.1 %id)
BM976467 lung, Primary Lung Cystic Fibrosis EpithelialCells .k-u 1214 to 1856 661 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 643/643
(100 %)
0 diff
(100 %id)
CA422018 Bone, Enchondroma cell line .k-u 1215 to 1856 660 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 642/642
(100 %)
1 diff
(99.9 %id)
AA234501 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k-u 1217 to 1512 1 to 296   fully sequenced, Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 296/296
(100 %)
2 diff
(99.4 %id)
BE707638 head_neck .k-u 1220 to 1709 495 to 6       490/495
(98 %)
0 diff
(100 %id)
BQ343004 nervous_normal .k-u 1223 to 1563 346 to 3       344/346
(99 %)
0 diff
(100 %id)
TI_154024508   .k-u 1228 to 1855 727 to 104   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 624/686
(90 %)
4 diff
(99.5 %id)
CK570314 rectum .k-u 1231 to 1707 477 to 1       477/477
(100 %)
4 diff
(99.2 %id)
AW904639 nervous_normal .k-u 1232 to 1703 495 to 24       472/503
(93 %)
0 diff
(100 %id)
TI_149274964   .k-u 1234 to 1641 499 to 92   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 408/1013
(40 %)
0 diff
(100 %id)
DA827989 placenta .k-u 1235 to 1858 2 to 625   fully sequenced, capped   624/624
(100 %)
2 diff
(99.7 %id)
TI_154103726   .k-u 1245 to 1856 669 to 67   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 603/787
(76 %)
11 diff
(98.7 %id)
CB157407 Liver .k-u 1246 to 1849 606 to 1     Submitted on the opposite strand 606/606
(100 %)
2 diff
(99.7 %id)
H56193 pineal gland .k-u 1249 to 1644 1 to 405     Submitted on the opposite strand 405/405
(100 %)
15 diff
(96.3 %id)
BG939026 Bone, Hip .k-u 1258 to 1858 603 to 3       601/603
(99 %)
0 diff
(100 %id)
BQ343146 nervous_normal .k-u 1277 to 1777 501 to 1       501/501
(100 %)
2 diff
(99.7 %id)
FN176965 breast carcinoma .k-u 1281 to 1332 1 to 54       54/54
(100 %)
2 diff
(96.3 %id)
BP385181 pancreatic islet .k-u 1281 to 1865 1 to 587   tiling clone, Submitted on the opposite strand 587/588
(99 %)
4 diff
(99.4 %id)
TI_149314828   .k-u 1288 to 1858 668 to 101       568/1003
(56 %)
0 diff
(100 %id)
BE932341 head_neck .k-u 1289 to 1849 609 to 51       559/609
(91 %)
0 diff
(100 %id)
BE932369 head_neck .k-u 1289 to 1849 609 to 51       559/609
(91 %)
0 diff
(100 %id)
CB163664 Liver .k-u 1290 to 1849 560 to 1     Submitted on the opposite strand 560/560
(100 %)
0 diff
(100 %id)
AA778347 heart .k-u 1301 to 1856 556 to 1       556/556
(100 %)
0 diff
(100 %id)
FN091793 breast carcinoma .k-u 1308 to 1417 111 to 1     Submitted on the opposite strand 111/113
(98 %)
4 diff
(96.5 %id)
AI114787 Liver .k-u 1326 to 1846 523 to 1       523/523
(100 %)
13 diff
(97.6 %id)
AJ710904 heart .k-u 1328 to 1378 1 to 51       51/51
(100 %)
1 diff
(98.1 %id)
BF961622 nervous_normal .k-u 1332 to 1774 446 to 5       442/446
(99 %)
0 diff
(100 %id)
AW351714 colon .k-u 1336 to 1826 492 to 1       492/493
(99 %)
2 diff
(99.6 %id)
AW905518 nervous_normal .k-u 1343 to 1692 354 to 5       350/366
(95 %)
0 diff
(100 %id)
AW905567 nervous_normal .k-u 1343 to 1687 365 to 15       351/375
(93 %)
0 diff
(100 %id)
BF364544 nervous_normal .k-u 1343 to 1713 373 to 2       372/385
(96 %)
0 diff
(100 %id)
AW157736 brain, frontal lobe .k-u 1344 to 1858 520 to 6       515/520
(99 %)
0 diff
(100 %id)
FN093236 breast carcinoma .k-u 1350 to 1461 112 to 1     Submitted on the opposite strand 112/113
(99 %)
1 diff
(99.2 %id)
DN915742   .k-u 1354 to 1825 474 to 3       472/474
(99 %)
0 diff
(100 %id)
AW752141 colon .k-u 1358 to 1773 421 to 1       421/421
(100 %)
7 diff
(98.4 %id)
DB551170 hippocampus .k-u 1358 to 1850 1 to 493     Submitted on the opposite strand 493/494
(99 %)
2 diff
(99.6 %id)
BI060180 uterus_tumor .k-u 1361 to 1815 455 to 1       455/455
(100 %)
1 diff
(99.8 %id)
AI267229 brain, frontal lobe (see description) .k-u 1361 to 1716 366 to 11       356/366
(97 %)
0 diff
(100 %id)
TI_154137087   .k-u 1362 to 1858 575 to 79       497/992
(50 %)
0 diff
(100 %id)
BF960943 nervous_normal .k-u 1367 to 1563 209 to 6       204/209
(97 %)
0 diff
(100 %id)
BF961620 nervous_normal .k-u 1367 to 1555 189 to 1       189/189
(100 %)
0 diff
(100 %id)
BF961848 nervous_normal .k-u 1367 to 1563 203 to 7       197/203
(97 %)
0 diff
(100 %id)
DB544948 hippocampus .k-u 1371 to 1856 1 to 486   AAA Submitted on the opposite strand 486/486
(100 %)
0 diff
(100 %id)
AV719790 corresponding non cancerous liver tissue .k-u 1373 to 1839 466 to 1     Submitted on the opposite strand 466/466
(100 %)
1 diff
(99.8 %id)
Z38389 brain, total brain .k-u 1379 to 1641 263 to 1       263/263
(100 %)
0 diff
(100 %id)
BF954325 nervous_normal .k-u 1381 to 1788 412 to 5       408/412
(99 %)
0 diff
(100 %id)
DB569213 hypothalamus .k-u 1393 to 1855 1 to 463     Submitted on the opposite strand 463/463
(100 %)
0 diff
(100 %id)
BE702437 nervous_normal .k-u 1395 to 1675 280 to 4       277/280
(98 %)
0 diff
(100 %id)
DB574656 hypothalamus .k-u 1408 to 1856 1 to 449     Submitted on the opposite strand 449/449
(100 %)
0 diff
(100 %id)
FN119618 breast carcinoma .k-u 1420 to 1504 86 to 2     Submitted on the opposite strand 85/87
(97 %)
0 diff
(100 %id)
FN084643 breast carcinoma .k-u 1437 to 1495 59 to 1     Submitted on the opposite strand 59/60
(98 %)
1 diff
(98.4 %id)
BM150940 leukopheresis .k-u 1440 to 1865 433 to 8       426/434
(98 %)
6 diff
(98.7 %id)
BE716283 head_neck .k-u 1441 to 1787 353 to 6       348/355
(98 %)
0 diff
(100 %id)
AA533532 invasive prostate tumor, Prostate .k-u 1441 to 1850 434 to 26   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 409/459
(89 %)
7 diff
(98.5 %id)
FN100866 breast carcinoma .k-u 1446 to 1527 79 to 1     Submitted on the opposite strand 79/80
(98 %)
3 diff
(96.3 %id)
BU734970 eye, lens .k-u 1446 to 1827 400 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 382/382
(100 %)
1 diff
(99.8 %id)
AI267598 brain, frontal lobe (see description) .k-u 1453 to 1716 276 to 13       264/276
(95 %)
0 diff
(100 %id)
AA887113 metastatic prostate bone lesion .k-u 1456 to 1866 424 to 14       411/428
(96 %)
7 diff
(98.4 %id)
AI750515 Bone, Hip .k-u 1460 to 1771 304 to 13       292/304
(96 %)
0 diff
(100 %id)
BM725861 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .k-u 1463 to 1856 1 to 394   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 394/394
(100 %)
0 diff
(100 %id)
AA706554   .k-u 1465 to 1837 373 to 1     Submitted on the opposite strand 373/373
(100 %)
1 diff
(99.8 %id)
AA287296 germinal center B cell .k-u 1472 to 1850 379 to 1   fully sequenced,   379/379
(100 %)
0 diff
(100 %id)
AA236541 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k-u 1482 to 1850 385 to 17   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 369/369
(100 %)
0 diff
(100 %id)
AA229959   .k-u 1499 to 1858 361 to 2       360/361
(99 %)
0 diff
(100 %id)
FN117665 breast carcinoma .k-u 1510 to 1615 1 to 109       109/109
(100 %)
3 diff
(97.3 %id)
BI038339 nervous_tumor .k-u 1513 to 1800 293 to 6       288/293
(98 %)
0 diff
(100 %id)
BU429312 lymph .k-u 1519 to 1850 375 to 44   AAA Submitted on the opposite strand 332/332
(100 %)
0 diff
(100 %id)
N36689 melanocyte .k-u 1522 to 1846 330 to 6     Submitted on the opposite strand 325/330
(98 %)
0 diff
(100 %id)
BI060614 uterus_tumor .k-u 1523 to 1826 310 to 7       304/310
(98 %)
0 diff
(100 %id)
DB372363 placenta .k-u 1567 to 1856 290 to 1   fully sequenced,   290/290
(100 %)
0 diff
(100 %id)
AW351729 colon .k-u 1596 to 1695 101 to 1       101/101
(100 %)
2 diff
(98.1 %id)
AA585274   .k-u 1600 to 1850 251 to 1       251/253
(99 %)
3 diff
(98.9 %id)
BU734925 eye, lens .k-u 1605 to 1856 270 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 252/252
(100 %)
0 diff
(100 %id)
T31223 brain .k-u 1609 to 1850 243 to 1     Submitted on the opposite strand 243/243
(100 %)
1 diff
(99.6 %id)
FN165156 breast carcinoma .k-u 1624 to 1728 1 to 103       103/103
(100 %)
2 diff
(98.1 %id)
Z28638 leg muscle, skeletal muscle .k-u 1626 to 1855 230 to 1       230/230
(100 %)
2 diff
(99.2 %id)
H56409 pineal gland .k-u 1635 to 1857 223 to 1     Submitted on the opposite strand 223/223
(100 %)
0 diff
(100 %id)
FN158911 breast carcinoma .k-u 1642 to 1759 1 to 117       117/117
(100 %)
1 diff
(99.2 %id)
FN154981 breast carcinoma .k-u 1670 to 1771 1 to 108       108/119
(90 %)
5 diff
(95.8 %id)
FN059107 breast carcinoma .k-u 1741 to 1820 1 to 80       80/80
(100 %)
2 diff
(97.5 %id)
DA266536 caudate nucleus .l 1 to 553 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
BF893354 marrow .l 418 to 708 4 to 296   tiling clone,   293/296
(98 %)
6 diff
(98.0 %id)
BE140435 head_neck .l 561 to 1121 563 to 3   tiling clone, Submitted on the opposite strand 561/563
(99 %)
0 diff
(100 %id)
DA116378 cerebellum .m-u 1 to 568 2 to 569 exact tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
DA244648 brain .m-u 1 to 352 2 to 354 exact capped   353/353
(100 %)
2 diff
(99.5 %id)
DA384806 thalamus .m-u 1 to 543 2 to 544 exact capped   543/545
(99 %)
3 diff
(99.5 %id)
DA404571 thalamus .m-u 1 to 330 2 to 331 exact tiling clone, capped   330/330
(100 %)
1 diff
(99.7 %id)
DA078247 cerebellum .n 1 to 568 2 to 569 exact tiling clone, capped   568/568
(100 %)
2 diff
(99.7 %id)
337 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l, .m-u, .n Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI