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Gene CALD1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
676 representative clones for gene CALD1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BF678925 Prostate .a 1 to 535 1 to 533   tiling clone,   533/892
(59 %)
6 diff
(99.4 %id)
NM_033138.3   .a 196 to 5426 1 to 5231 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 5231/5231
(100 %)
0 diff
(100 %id)
M83216 aorta .a 433 to 4044 1 to 3610 H397R tiling clone,   3610/3610
(100 %)
10 diff
(99.8 %id)
BQ718603 sympathetic trunk .a 708 to 1628 1 to 922       922/923
(99 %)
30 diff
(96.8 %id)
AU140904 placenta .a 731 to 1472 45 to 792   tiling clone, capped   748/798
(93 %)
19 diff
(97.7 %id)
BX476085   .a 802 to 1456 1 to 655       655/655
(100 %)
3 diff
(99.6 %id)
BX504360   .a 838 to 1572 1 to 727       727/730
(99 %)
11 diff
(98.5 %id)
BX504392   .a 838 to 1570 1 to 727       727/727
(100 %)
9 diff
(98.8 %id)
AA971545 carcinoid, lung .a 939 to 1437 1 to 498     Submitted on the opposite strand 498/498
(100 %)
2 diff
(99.6 %id)
BF846251 lung_normal .a 955 to 1322 26 to 392       367/392
(93 %)
7 diff
(98.3 %id)
BF957212 nervous_normal .a 1021 to 1478 462 to 3       460/467
(98 %)
0 diff
(100 %id)
BG950074 colon .a 1028 to 1341 15 to 327       313/337
(92 %)
4 diff
(98.9 %id)
DA925474 small intestine .a 1034 to 1609 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA852983 placenta .a 1090 to 1669 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
BX481205   .a 1144 to 1791 1 to 650       650/650
(100 %)
6 diff
(99.1 %id)
BP423228 small intestine .a 1188 to 1695 509 to 2       508/509
(99 %)
0 diff
(100 %id)
BG979572 colon_normal .a 1198 to 1581 394 to 14       381/394
(96 %)
0 diff
(100 %id)
DA194819 amygdala .a 1212 to 1755 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BX480963   .a 1217 to 1660 1 to 444       444/444
(100 %)
0 diff
(100 %id)
BG150759 nasopharynx, normal epithelium .a 1235 to 1699 1 to 465       465/465
(100 %)
3 diff
(99.4 %id)
AA092764   .a 1253 to 1481 18 to 239       222/249
(89 %)
17 diff
(93.2 %id)
AI926727 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1298 to 2050 753 to 1       753/753
(100 %)
25 diff
(96.7 %id)
AI801609 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1305 to 1894 586 to 1       586/588
(99 %)
6 diff
(99.0 %id)
BF588622 breast, lobullar carcinoma in situ .a 1313 to 1789 476 to 1       476/476
(100 %)
10 diff
(97.9 %id)
T28144 colon .a 1314 to 1482 169 to 1     Submitted on the opposite strand 169/169
(100 %)
1 diff
(99.5 %id)
AW083647 esophagus, squamous cell carcinoma .a 1316 to 1739 423 to 1       423/461
(91 %)
16 diff
(96.6 %id)
BF060828 breast, lobullar carcinoma in situ .a 1331 to 1652 322 to 1       322/322
(100 %)
4 diff
(98.8 %id)
BF060807 breast, lobullar carcinoma in situ .a 1333 to 1760 1 to 428     Submitted on the opposite strand 428/428
(100 %)
3 diff
(99.3 %id)
BF060813 breast, lobullar carcinoma in situ .a 1335 to 1791 1 to 457     Submitted on the opposite strand 457/458
(99 %)
2 diff
(99.6 %id)
BF060868 breast, lobullar carcinoma in situ .a 1344 to 1758 1 to 415     Submitted on the opposite strand 415/415
(100 %)
0 diff
(100 %id)
AI888318 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1356 to 1622 267 to 1       267/283
(94 %)
11 diff
(96.2 %id)
BP420002 small intestine .a 1394 to 1983 1 to 591     Submitted on the opposite strand 591/591
(100 %)
1 diff
(99.9 %id)
BF476877 breast, lobullar carcinoma in situ .a 1394 to 1602 209 to 1       209/215
(97 %)
2 diff
(99.1 %id)
DA317812 hippocampus .a 1399 to 1924 2 to 528   capped   527/527
(100 %)
2 diff
(99.7 %id)
DB279460 uterus .a 1415 to 1872 2 to 459   capped   458/458
(100 %)
1 diff
(99.8 %id)
DA876624 Prostate .a 1420 to 1970 2 to 552   capped   551/560
(98 %)
5 diff
(99.2 %id)
BF063598 breast, lobullar carcinoma in situ .a 1427 to 1726 1 to 300     Submitted on the opposite strand 300/309
(97 %)
11 diff
(96.5 %id)
BF477200 breast, lobullar carcinoma in situ .a 1448 to 1799 388 to 36       353/388
(90 %)
8 diff
(98.0 %id)
BF001035 breast, lobullar carcinoma in situ .a 1456 to 1798 365 to 22       344/365
(94 %)
0 diff
(100 %id)
BF000738 breast, lobullar carcinoma in situ .a 1461 to 1795 342 to 8       335/348
(96 %)
0 diff
(100 %id)
BP424134 small intestine .a 1488 to 1804 40 to 358     Submitted on the opposite strand 319/367
(86 %)
12 diff
(96.8 %id)
BF063453 breast, lobullar carcinoma in situ .a 1488 to 1788 301 to 1       301/301
(100 %)
6 diff
(98.1 %id)
BF476902 breast, lobullar carcinoma in situ .a 1505 to 1784 280 to 1       280/281
(99 %)
9 diff
(96.8 %id)
BF476962 breast, lobullar carcinoma in situ .a 1505 to 1783 281 to 2       280/282
(99 %)
0 diff
(100 %id)
BF063480 breast, lobullar carcinoma in situ .a 1518 to 1798 1 to 282     Submitted on the opposite strand 282/288
(97 %)
8 diff
(97.3 %id)
BX471577   .a 1525 to 2095 1 to 580       580/580
(100 %)
13 diff
(97.8 %id)
BX471771   .a 1650 to 2121 1 to 472       472/472
(100 %)
5 diff
(99.0 %id)
BF477011 breast, lobullar carcinoma in situ .a 1670 to 1970 38 to 338     Submitted on the opposite strand 301/347
(86 %)
1 diff
(99.8 %id)
BX471729   .a 1736 to 1927 1 to 193       193/193
(100 %)
1 diff
(99.5 %id)
BU930170 Prostate .a 1790 to 2047 8 to 265   tiling clone,   258/269
(95 %)
1 diff
(99.7 %id)
TI_1948137285   .a 2051 to 3039 1135 to 134       1004/1325
(75 %)
15 diff
(98.9 %id)
TI_1948137630   .a 2064 to 3039 1107 to 142       968/1301
(74 %)
43 diff
(96.7 %id)
CN314595 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2081 to 2791 1 to 708       708/708
(100 %)
3 diff
(99.6 %id)
CN314592 embryonic stem cells, cell lines H1, H7, andH9 .a 2090 to 2689 13 to 613       601/613
(98 %)
7 diff
(98.9 %id)
DB164186 thymus .a 2095 to 2667 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
CN314577 embryonic stem cells, cell lines H1, H7, andH9 .a 2120 to 2753 1 to 633       633/633
(100 %)
1 diff
(99.9 %id)
BX494092 Liver .a 2126 to 2720 1 to 595       595/595
(100 %)
2 diff
(99.7 %id)
AU139912 placenta .a 2126 to 2824 2 to 704   capped   703/703
(100 %)
8 diff
(98.9 %id)
DA480442   .a 2127 to 2683 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
CU445763 epidermis .a 2143 to 2842 1 to 701       701/701
(100 %)
7 diff
(99.1 %id)
BX482790   .a 2164 to 2659 22 to 518       497/518
(95 %)
7 diff
(98.7 %id)
TI_1948137629   .a 2171 to 3039 1000 to 129       874/1004
(87 %)
4 diff
(99.7 %id)
TI_1948137284   .a 2174 to 3039 997 to 130       870/997
(87 %)
5 diff
(99.5 %id)
CN314582 embryonic stem cells, cell lines H1, H7, andH9 .a 2189 to 2692 1 to 505       505/505
(100 %)
3 diff
(99.5 %id)
TI_1948137980   .a 2191 to 3039 993 to 142       854/1338
(63 %)
23 diff
(98.3 %id)
TI_1948136946   .a 2192 to 3039 979 to 127       855/1349
(63 %)
14 diff
(99.0 %id)
CX756675 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 2200 to 2940 1 to 741     Submitted on the opposite strand 741/741
(100 %)
0 diff
(100 %id)
TI_1948137979   .a 2204 to 3039 977 to 128       852/1011
(84 %)
16 diff
(98.5 %id)
CN314597 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2240 to 2779 1 to 541       541/541
(100 %)
4 diff
(99.3 %id)
AL047737 uterus .a 2263 to 2663 1 to 398       398/398
(100 %)
5 diff
(98.8 %id)
BP423705 small intestine .a 2298 to 2822 1 to 525     Submitted on the opposite strand 525/525
(100 %)
0 diff
(100 %id)
BP423773 small intestine .a 2298 to 2811 1 to 514     Submitted on the opposite strand 514/514
(100 %)
0 diff
(100 %id)
AW938852 denis_drash .a 2351 to 2721 1 to 370       370/370
(100 %)
10 diff
(97.3 %id)
CN314578 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2359 to 3030 1 to 673       673/673
(100 %)
1 diff
(99.9 %id)
AI750389 Bone, Hip .a 2434 to 2771 5 to 342       338/342
(98 %)
6 diff
(98.3 %id)
AA194330 muscle, skeletal muscle .a 2439 to 2834 1 to 396       396/396
(100 %)
0 diff
(100 %id)
DA159551 amygdala .a 2460 to 3014 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
CB145690 Liver .a 2479 to 2853 1 to 375       375/375
(100 %)
0 diff
(100 %id)
BP425042 small intestine .a 2486 to 2983 1 to 498     Submitted on the opposite strand 498/498
(100 %)
0 diff
(100 %id)
CN314569 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2502 to 2687 1 to 186       186/186
(100 %)
0 diff
(100 %id)
BE925614 amnion_normal .a 2504 to 2671 20 to 187       168/192
(87 %)
7 diff
(96.4 %id)
DA651291   .a 2514 to 3055 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
CN481629 eye .a 2531 to 3155 1 to 625       625/625
(100 %)
0 diff
(100 %id)
DA024678   .a 2564 to 3143 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA648096   .a 2564 to 3078 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
DA889318   .a 2565 to 3123 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA871729 Prostate .a 2609 to 3145 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA599416   .a 2624 to 3189 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
CB990472 Human Placenta, placenta .b 1 to 375 20 to 393   tiling clone,   374/871
(42 %)
3 diff
(99.7 %id)
DA852857 placenta .b 56 to 610 2 to 556   tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
DB328793 placenta .b 3940 to 4486 547 to 1   tiling clone,   547/547
(100 %)
1 diff
(99.9 %id)
NM_033157.3   .c 1 to 4541 1 to 4541 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 4541/4541
(100 %)
0 diff
(100 %id)
DB090561 testis .c 2 to 568 2 to 568   tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
AK289686 amygdala .c 8 to 2672 1 to 2665 exact tiling clone,   2665/2665
(100 %)
0 diff
(100 %id)
DA186695 amygdala .c 9 to 566 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA191748 amygdala .c 9 to 601 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA872084 Prostate .c 10 to 554 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
CD359921 testis .c 23 to 843 1 to 828       828/881
(93 %)
12 diff
(98.7 %id)
AU280208   .c 160 to 732 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DA034017   .c 161 to 732 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA034465   .c 168 to 695 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DA723012   .c 168 to 721 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA727148   .c 192 to 739 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA853291 placenta .c 211 to 766 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BX483138   .c 214 to 817 1 to 604       604/605
(99 %)
1 diff
(99.9 %id)
DA969558 stomach .c 214 to 774 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB083105 testis .c 214 to 769 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA023943   .c 218 to 798 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
AL698702 human skeletal muscle .c 222 to 785 1 to 564       564/564
(100 %)
0 diff
(100 %id)
DA599186   .c 222 to 778 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA030779   .c 223 to 796 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA033559   .c 223 to 793 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA113519 cerebellum .c 223 to 766 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA214993 brain .c 223 to 774 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA339051 hippocampus .c 223 to 813 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA427080 colon .c 223 to 790 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA576061   .c 223 to 783 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA596493   .c 223 to 785 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA632989 Kidney .c 223 to 796 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA709603   .c 223 to 783 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA713219   .c 223 to 775 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA755974   .c 223 to 786 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA757087   .c 223 to 767 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA760510   .c 223 to 778 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA850583 placenta .c 223 to 753 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA851488 placenta .c 223 to 804 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA857552 placenta .c 223 to 766 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA864731 placenta .c 223 to 811 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA881553   .c 223 to 784 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB067947 testis .c 223 to 762 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DB219377 trachea .c 223 to 796 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB239741 trachea .c 223 to 809 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DB275962 uterus .c 223 to 793 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB288269 uterus .c 223 to 786 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB288455 uterus .c 223 to 776 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB289977 uterus .c 223 to 781 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA661161   .c 224 to 777 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA021709   .c 226 to 788 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA034337   .c 226 to 758 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA105065 cerebellum .c 226 to 786 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA355858 subthalamic nucleus .c 226 to 783 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA574876   .c 226 to 784 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA579722   .c 226 to 776 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA580809   .c 226 to 767 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA652442   .c 226 to 805 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA656634   .c 226 to 792 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA657127   .c 226 to 799 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA711249   .c 226 to 783 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA715997   .c 226 to 779 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA716837   .c 226 to 770 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA717168   .c 226 to 771 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA717407   .c 226 to 786 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA720115   .c 226 to 787 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA854740 placenta .c 226 to 813 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA856238 placenta .c 226 to 813 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA856814 placenta .c 226 to 786 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA862542 placenta .c 226 to 788 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA996540   .c 226 to 762 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DB076640 testis .c 226 to 798 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB217856 trachea .c 226 to 774 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB221218 trachea .c 226 to 779 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB221710 trachea .c 226 to 788 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB240293 trachea .c 226 to 801 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB241389 trachea .c 226 to 821 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DB275293 uterus .c 226 to 785 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB281552 uterus .c 226 to 776 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB284579 uterus .c 226 to 770 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB285554 uterus .c 226 to 776 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA653888   .c 227 to 780 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA634687 Kidney .c 228 to 788 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA658962   .c 228 to 788 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA659441   .c 228 to 797 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA663120   .c 228 to 766 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA858347 placenta .c 228 to 884 2 to 659   capped   658/658
(100 %)
1 diff
(99.9 %id)
DB067079 testis .c 228 to 760 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DB276774 uterus .c 228 to 769 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB277436 uterus .c 228 to 760 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DB285926 uterus .c 228 to 775 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA851022 placenta .c 230 to 780 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA883266   .c 230 to 802 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB280257 uterus .c 230 to 772 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA580577   .c 237 to 808 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA725521   .c 237 to 780 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB280004 uterus .c 240 to 781 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA576436   .c 244 to 803 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA650845   .c 244 to 795 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
CN369301 embryonic stem cells, cell lines H1, H7, andH9 .c 245 to 980 1 to 736       736/736
(100 %)
0 diff
(100 %id)
BY798006 eye .c 248 to 859 1 to 612       612/612
(100 %)
0 diff
(100 %id)
DA720763   .c 253 to 818 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BQ925009 sciatic nerve .c 266 to 1085 1 to 824       824/941
(87 %)
19 diff
(98.0 %id)
DR157430 human embryonic stem cells differentiated toan early endodermal cell type .c 267 to 1041 1 to 775       775/775
(100 %)
1 diff
(99.9 %id)
DR156374 human embryonic stem cells differentiated toan early endodermal cell type .c 281 to 1016 1 to 736       736/736
(100 %)
0 diff
(100 %id)
DA236919 brain .c 290 to 849 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
CN369276 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 290 to 1002 1 to 714       714/714
(100 %)
3 diff
(99.6 %id)
CN369293 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 290 to 869 1 to 580       580/580
(100 %)
0 diff
(100 %id)
CN369297 embryonic stem cells, cell lines H1, H7, andH9 .c 290 to 981 1 to 692       692/692
(100 %)
0 diff
(100 %id)
DA578721   .c 308 to 879 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA092145 cerebellum .c 309 to 884 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA243419 brain .c 309 to 906 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DA248034 brain .c 309 to 895 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA421762 cervix .c 309 to 873 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA578209   .c 309 to 854 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA648739   .c 309 to 855 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA658310   .c 309 to 880 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA658693   .c 309 to 885 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA713543   .c 309 to 849 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA864172 placenta .c 309 to 913 2 to 606   capped   605/605
(100 %)
0 diff
(100 %id)
DA890498 rectum .c 309 to 869 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB064917 testis .c 309 to 842 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DA577350   .c 310 to 861 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
CF243044 Brain glioblastoma .c 335 to 1014 53 to 743       691/838
(82 %)
24 diff
(97.2 %id)
CN369295 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 393 to 1023 1 to 631       631/631
(100 %)
0 diff
(100 %id)
DA656555   .c 467 to 1049 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA654774   .c 845 to 1412 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB062350 testis .c 954 to 1486 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA656433   .c 1021 to 1596 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
CN314568 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 1307 to 2033 1 to 727       727/727
(100 %)
0 diff
(100 %id)
BU151076 sympathetic trunk .c 1768 to 2597 1 to 836       836/846
(98 %)
9 diff
(99.0 %id)
CN314576 embryonic stem cells, DMSO-treated H9 cellline .c 1798 to 2513 1 to 716       716/716
(100 %)
0 diff
(100 %id)
DA479706   .c 1808 to 2364 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA374933 thalamus .c 1819 to 2373 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DB144603 thymus .c 1823 to 2362 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
BP425346 small intestine .c 1827 to 2367 1 to 541     Submitted on the opposite strand 541/541
(100 %)
0 diff
(100 %id)
BX538339 human rectum tumor .c 1837 to 4450 1 to 2611   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 2611/2611
(100 %)
6 diff
(99.8 %id)
BX479376   .c 1841 to 2491 1 to 651       651/651
(100 %)
1 diff
(99.9 %id)
DA879440 Prostate .c 1844 to 2415 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA874557 Prostate .c 1875 to 2454 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
CN314596 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 1892 to 2511 1 to 620       620/620
(100 %)
0 diff
(100 %id)
AI798679 pooled .c 1898 to 2672 774 to 1       774/775
(99 %)
13 diff
(98.4 %id)
DA910426   .c 1908 to 2458 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BQ010124 Chondrosarcoma, Left Pubic Bone .c 1942 to 2672 748 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 730/730
(100 %)
1 diff
(99.9 %id)
BM995846 Chondrosarcoma, Left Pubic Bone .c 1955 to 2596 659 to 19   AAA Possibly primed on the genome, locally A rich (23/23 A in genome downstream of last aligned base) 641/641
(100 %)
1 diff
(99.9 %id)
DA884182   .c 1976 to 2541 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA997564   .c 2016 to 2583 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
AI743646 pooled .c 2024 to 2671 648 to 1       648/648
(100 %)
5 diff
(99.3 %id)
BQ014498 Chondrosarcoma, Left Pubic Bone .c 2029 to 2672 662 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 644/644
(100 %)
0 diff
(100 %id)
CA440470 Chondrosarcoma, Left Pubic Bone .c 2029 to 2672 662 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 644/644
(100 %)
0 diff
(100 %id)
BF058785 fibrotheoma, ovary .c 2033 to 2671 639 to 1       639/639
(100 %)
2 diff
(99.7 %id)
CK821334 Pancreas, Purified pancreatic islet .c 2060 to 2650 1 to 591     Submitted on the opposite strand 591/591
(100 %)
0 diff
(100 %id)
BQ027753 mixed .c 2072 to 2672 619 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 601/602
(99 %)
0 diff
(100 %id)
CA413971 Chondrosarcoma Grade II, Left Pelvis .c 2072 to 2672 619 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 601/602
(99 %)
0 diff
(100 %id)
BQ019489 Chondrosarcoma, Left Pubic Bone .c 2077 to 2672 614 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 596/596
(100 %)
0 diff
(100 %id)
AA234043 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2112 to 2426 1 to 315   fully sequenced,   315/315
(100 %)
1 diff
(99.7 %id)
BF061290 fibrotheoma, ovary .c 2122 to 2672 551 to 1       551/551
(100 %)
0 diff
(100 %id)
AA453669 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2139 to 2445 1 to 307       307/307
(100 %)
0 diff
(100 %id)
DA865412 Prostate .c 2220 to 2769 2 to 550   capped   549/549
(100 %)
4 diff
(99.3 %id)
DA596218   .c 2221 to 2786 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA685086   .c 2237 to 2773 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA843516 placenta .c 2260 to 2848 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DB040748 testis .c 2266 to 2811 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA655143   .c 2274 to 2848 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA649261   .c 2275 to 2809 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB274814 uterus .c 2276 to 2836 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA021255   .c 2277 to 2839 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA601606   .c 2277 to 2840 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA649786   .c 2279 to 2821 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA603021   .c 2280 to 2849 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA018830   .c 2282 to 3124 2 to 845   capped   844/844
(100 %)
10 diff
(98.9 %id)
DA024248   .c 2287 to 2850 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA476408   .c 2303 to 2874 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA927537 small intestine .c 2314 to 2888 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA661943   .c 2316 to 2860 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
BU149150 sympathetic trunk .c 2318 to 3224 1 to 905       905/905
(100 %)
13 diff
(98.6 %id)
DA474091   .c 2320 to 2891 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB242991 stomach, tumor tissue .c 2330 to 2896 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA546174   .c 2353 to 2929 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
TI_149295275   .c 2373 to 3159 870 to 84   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 787/978
(80 %)
7 diff
(99.3 %id)
DA027860   .c 2381 to 2930 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA577049   .c 2389 to 2961 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
AA234044 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2404 to 2672 269 to 1   fully sequenced,   269/269
(100 %)
0 diff
(100 %id)
BM985291 lung .c 2489 to 3159 689 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 671/671
(100 %)
0 diff
(100 %id)
AA478174 ovarian tumor, ovary .c 2568 to 2941 1 to 374       374/374
(100 %)
0 diff
(100 %id)
AA447737 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2607 to 2958 352 to 1       352/352
(100 %)
0 diff
(100 %id)
BJ990854 hepatoblastoma .c 2612 to 3201 11 to 600   tiling clone,   590/600
(98 %)
6 diff
(99.0 %id)
DA623120 Kidney .c 2645 to 3198 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB329384 Prostate .c 3932 to 4450 519 to 1       519/519
(100 %)
0 diff
(100 %id)
BJ990855 hepatoblastoma .c 3983 to 4522 540 to 1   tiling clone,   540/540
(100 %)
0 diff
(100 %id)
AA478018 ovarian tumor, ovary .c 4008 to 4449 442 to 1       442/442
(100 %)
0 diff
(100 %id)
NM_033139.3   .d 1 to 4280 2 to 4281 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 4281/4281
(100 %)
0 diff
(100 %id)
D90452   .d 210 to 2411 1 to 2198 exact tiling clone,   2198/2198
(100 %)
4 diff
(99.9 %id)
DR760701 embryonic stem .d 768 to 1573 1 to 806       806/806
(100 %)
0 diff
(100 %id)
AK300282 placenta .e 1 to 1978 9 to 1986 V71E tiling clone,   1978/1978
(100 %)
1 diff
(100.0 %id)
DC381396 placenta .e 1 to 537 9 to 545       537/537
(100 %)
1 diff
(99.9 %id)
DC379961 placenta .e 78 to 637 1 to 560   tiling clone,   560/560
(100 %)
2 diff
(99.7 %id)
NM_004342.6   .f 1 to 4466 1 to 4466 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 4466/4466
(100 %)
0 diff
(100 %id)
BC040354 Skin, squamous cell carcinoma .f 266 to 4375 1 to 4111 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 4111/4111
(100 %)
3 diff
(100.0 %id)
M64110 lung .f 356 to 3322 1 to 2969 V275M     2969/2975
(99 %)
6 diff
(99.8 %id)
TI_1948137282   .f 466 to 1340 128 to 994       867/1298
(66 %)
29 diff
(97.8 %id)
TI_1948137283   .f 466 to 1499 134 to 1165       1032/1222
(84 %)
34 diff
(97.3 %id)
TI_1948137627   .f 466 to 1297 132 to 971       840/1405
(59 %)
28 diff
(98.1 %id)
TI_1948137628   .f 466 to 1348 129 to 1024   AAA   896/1274
(70 %)
26 diff
(98.0 %id)
TI_1948137977   .f 466 to 1233 129 to 899       771/1386
(55 %)
18 diff
(98.8 %id)
TI_1948137978   .f 466 to 1445 131 to 1123       993/1249
(79 %)
49 diff
(96.1 %id)
TI_1948136943   .f 468 to 1233 133 to 895       763/1328
(57 %)
17 diff
(98.8 %id)
TI_1948136944   .f 468 to 1496 137 to 1176       1040/1276
(81 %)
49 diff
(96.2 %id)
DR156668 human embryonic stem cells differentiated toan early endodermal cell type .f 475 to 1178 1 to 704       704/704
(100 %)
0 diff
(100 %id)
CN483498 eye .f 481 to 1134 1 to 654       654/654
(100 %)
0 diff
(100 %id)
CN369294 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 508 to 1096 1 to 589       589/589
(100 %)
0 diff
(100 %id)
TI_57188306   .f 549 to 1279 50 to 781       732/733
(99 %)
3 diff
(99.6 %id)
BI859243 breast, mammary adenocarcinoma, cell line .f 550 to 1279 1 to 731       731/732
(99 %)
3 diff
(99.6 %id)
CA389379 eye, RPE/choroid .f 572 to 1232 1 to 661       661/661
(100 %)
0 diff
(100 %id)
CN369288 embryonic stem cells, DMSO-treated H9 cellline .f 728 to 1177 1 to 450       450/450
(100 %)
0 diff
(100 %id)
T78485 liver and spleen .f 760 to 1127 7 to 374     Submitted on the opposite strand 368/374
(98 %)
9 diff
(97.6 %id)
CN369317 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 803 to 1433 8 to 638       631/638
(98 %)
6 diff
(99.1 %id)
BX952246   .f 829 to 1478 1 to 650       650/650
(100 %)
1 diff
(99.9 %id)
DA025152   .f 836 to 1409 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB213404 trachea .f 838 to 1410 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA312875 hippocampus .f 840 to 1389 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB225431 trachea .f 840 to 1401 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA223390 brain .f 843 to 1397 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DA472371   .f 846 to 1416 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
ES313770 beard hair, skin .f 862 to 1161 1 to 301       301/302
(99 %)
3 diff
(99.1 %id)
BX505674   .f 863 to 1639 1 to 777       777/779
(99 %)
5 diff
(99.4 %id)
AU280110   .f 885 to 1425 1 to 542       542/542
(100 %)
2 diff
(99.7 %id)
DA218580 brain .f 890 to 1440 2 to 554   capped   553/553
(100 %)
3 diff
(99.5 %id)
DB141703 thymus .f 898 to 1371 2 to 475   capped   474/474
(100 %)
1 diff
(99.8 %id)
H52087 liver and spleen .f 909 to 1207 1 to 305   fully sequenced, Submitted on the opposite strand 305/305
(100 %)
6 diff
(98.1 %id)
DA800452 brain .f 911 to 1452 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
CN369302 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 930 to 1462 1 to 534       534/534
(100 %)
1 diff
(99.9 %id)
DB216030 trachea .f 936 to 1486 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB153116 thymus .f 937 to 1520 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
CN369292 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 956 to 1110 1 to 155       155/155
(100 %)
1 diff
(99.4 %id)
AU310528 neuroblastoma .f 961 to 1535 1 to 575     Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 575/575
(100 %)
0 diff
(100 %id)
DA853601 placenta .f 992 to 1385 2 to 397   capped   396/396
(100 %)
3 diff
(99.3 %id)
BI859294 breast, mammary adenocarcinoma, cell line .f 1009 to 1752 1 to 749       747/749
(99 %)
4 diff
(99.5 %id)
TI_57190761   .f 1009 to 1752 56 to 804       747/749
(99 %)
4 diff
(99.5 %id)
CN369275 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 1013 to 1506 1 to 494       494/494
(100 %)
2 diff
(99.6 %id)
CN369279 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 1036 to 1543 1 to 506       506/506
(100 %)
2 diff
(99.7 %id)
DA401735 thalamus .f 1061 to 1409 2 to 350   capped   349/349
(100 %)
1 diff
(99.8 %id)
BX390576 Placenta Cot 25-normalized .f 1086 to 1639 1 to 553       553/553
(100 %)
7 diff
(98.8 %id)
H51958 liver and spleen .f 1177 to 1416 244 to 3   fully sequenced, Submitted on the opposite strand 242/244
(99 %)
0 diff
(100 %id)
AU310529 neuroblastoma .f 3838 to 4375 549 to 12   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 538/538
(100 %)
2 diff
(99.7 %id)
NM_033140.3   .g 1 to 4202 2 to 4203 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 4203/4203
(100 %)
0 diff
(100 %id)
DA323544 hippocampus .g 1 to 555 2 to 556   tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
DA807713 brain .g 1 to 543 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA824027 pericardium .g 1 to 569 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BF965359 muscle (skeletal) .g 7 to 648 1 to 651       651/733
(88 %)
21 diff
(97.2 %id)
BF965445 muscle (skeletal) .g 7 to 694 1 to 679       679/855
(79 %)
17 diff
(98.1 %id)
DA706521   .g 12 to 583 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA756341   .g 18 to 569 8 to 559   capped   552/552
(100 %)
0 diff
(100 %id)
BG330504 large cell carcinoma, lung .g 36 to 328 1 to 292   available from MGC,   292/292
(100 %)
2 diff
(99.4 %id)
BC014035 Lung, large cell carcinoma .g 37 to 1149 1 to 1113   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1113/1126
(98 %)
2 diff
(99.9 %id)
DA740412   .g 41 to 540 2 to 501   capped   500/500
(100 %)
0 diff
(100 %id)
BX501549 Liver .g 46 to 518 1 to 473       473/473
(100 %)
1 diff
(99.8 %id)
DB097006 testis .g 47 to 616 2 to 571   capped   570/570
(100 %)
3 diff
(99.5 %id)
DA049551   .g 48 to 612 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BX491691   .g 48 to 533 1 to 486       486/486
(100 %)
2 diff
(99.6 %id)
DB281979 uterus .g 48 to 589 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
BQ028942 Bone, Subchondral Bone .g 51 to 746 712 to 19   AAA   694/700
(99 %)
4 diff
(99.5 %id)
CD176253 embryonic trophoblasts, made from WA01 stemcells .g 52 to 742 22 to 710   AAA   689/710
(97 %)
8 diff
(98.9 %id)
DB151938 thymus .g 53 to 653 2 to 604   capped   603/603
(100 %)
3 diff
(99.6 %id)
BX470316 Liver .g 54 to 578 1 to 525       525/525
(100 %)
2 diff
(99.7 %id)
BG033617 breast, mammary adenocarcinoma, cell line .g 54 to 644 1 to 590   AAA   590/590
(100 %)
1 diff
(99.9 %id)
BC061926 Skin, melanotic melanoma. .g 54 to 746 1 to 693   available from MGC, AAA   693/693
(100 %)
0 diff
(100 %id)
BM542528 melanotic melanoma, skin .g 55 to 677 1 to 627   available from MGC,   627/1091
(57 %)
17 diff
(98.5 %id)
DA018462   .g 56 to 613 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA146578 amygdala .g 56 to 624 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BP872048 embryonal kidney .g 56 to 648 1 to 593       593/593
(100 %)
1 diff
(99.9 %id)
BP872627 embryonal kidney .g 56 to 638 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
BP872648 embryonal kidney .g 56 to 637 1 to 583       583/583
(100 %)
7 diff
(98.8 %id)
BP872886 embryonal kidney .g 56 to 631 1 to 577       577/582
(99 %)
4 diff
(99.4 %id)
BQ222764 large cell carcinoma, lung .g 56 to 820 1 to 772       772/1090
(70 %)
20 diff
(98.2 %id)
DA051172   .g 57 to 656 2 to 601   capped   600/600
(100 %)
2 diff
(99.7 %id)
DA360576 subthalamic nucleus .g 57 to 598 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
BX501470 Liver .g 57 to 622 1 to 566       566/566
(100 %)
3 diff
(99.5 %id)
DB071054 testis .g 57 to 537 2 to 482   capped   481/481
(100 %)
1 diff
(99.8 %id)
BP870805 embryonal kidney .g 58 to 405 1 to 348       348/348
(100 %)
1 diff
(99.8 %id)
BJ990705 hepatoblastoma .g 58 to 657 1 to 600       600/600
(100 %)
6 diff
(99.0 %id)
AU076934   .g 58 to 270 1 to 214       214/214
(100 %)
1 diff
(99.6 %id)
DA100685 cerebellum .g 59 to 655 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DA123936 cerebellum .g 59 to 591 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA218897 brain .g 59 to 722 2 to 665   capped   664/664
(100 %)
1 diff
(99.9 %id)
DA243725 brain .g 59 to 640 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA338778 hippocampus .g 59 to 645 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA480976   .g 59 to 614 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
BX471891   .g 59 to 564 1 to 506       506/506
(100 %)
6 diff
(98.9 %id)
DA713618   .g 59 to 629 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA723609   .g 59 to 601 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA740254   .g 59 to 540 2 to 483   capped   482/482
(100 %)
0 diff
(100 %id)
DA950929 Spleen .g 59 to 626 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
DB019931 testis .g 59 to 595 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DB061006 testis .g 59 to 595 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DB062380 testis .g 59 to 606 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB092767 testis .g 59 to 607 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB188864 liver, tumor tissue .g 59 to 597 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB288766 uterus .g 59 to 606 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA475265   .g 61 to 604 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB279022 uterus .g 61 to 610 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA335074 hippocampus .g 64 to 645 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DB084817 testis .g 64 to 620 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA114656 cerebellum .g 68 to 626 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA763526 tongue .g 69 to 618 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
CN369305 embryonic stem cells, cell lines H1, H7, andH9 .g 71 to 472 1 to 404       404/404
(100 %)
5 diff
(98.8 %id)
BX470407   .g 71 to 751 1 to 682       682/684
(99 %)
2 diff
(99.8 %id)
DA099866 cerebellum .g 72 to 629 2 to 560   capped   559/559
(100 %)
4 diff
(99.3 %id)
DA243734 brain .g 72 to 649 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA318281 hippocampus .g 72 to 574 2 to 505   capped   504/504
(100 %)
2 diff
(99.7 %id)
DA726656   .g 72 to 595 2 to 526   capped   525/525
(100 %)
1 diff
(99.9 %id)
DB063927 testis .g 72 to 631 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB078957 testis .g 72 to 648 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA584092 lung .g 73 to 665 8 to 600   capped   593/593
(100 %)
0 diff
(100 %id)
DA997355   .g 75 to 637 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB088464 testis .g 75 to 613 2 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
DA161467 amygdala .g 76 to 651 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BX471522   .g 76 to 677 1 to 603       603/603
(100 %)
4 diff
(99.4 %id)
DA860916 placenta .g 76 to 540 2 to 466   capped   465/465
(100 %)
2 diff
(99.6 %id)
DA091560 cerebellum .g 77 to 655 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DA123055 cerebellum .g 77 to 622 2 to 548   capped   547/547
(100 %)
3 diff
(99.5 %id)
DA316988 hippocampus .g 77 to 620 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
CN369313 embryonic stem cells, cell lines H1, H7, andH9 .g 79 to 653 1 to 573       573/573
(100 %)
2 diff
(99.7 %id)
DA127632 cerebellum .g 81 to 676 2 to 598   capped   597/597
(100 %)
1 diff
(99.9 %id)
CN369304 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .g 81 to 809 1 to 728       728/728
(100 %)
2 diff
(99.8 %id)
CN369308 embryonic stem cells, cell lines H1, H7, andH9 .g 81 to 795 1 to 715       715/715
(100 %)
1 diff
(99.9 %id)
BC005006 Pancreas, adenocarcinoma .g 82 to 632 1 to 551   available from MGC,   551/597
(92 %)
1 diff
(99.9 %id)
CN369285 embryonic stem cells, cell lines H1, H7, andH9 .g 85 to 611 1 to 527       527/527
(100 %)
4 diff
(99.3 %id)
CN369286 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g 86 to 700 1 to 615       615/615
(100 %)
0 diff
(100 %id)
CN369296 embryonic stem cells, cell lines H1, H7, andH9 .g 88 to 685 1 to 596       596/596
(100 %)
2 diff
(99.7 %id)
DR003064 fetal brain .g 95 to 726 1 to 632       632/632
(100 %)
0 diff
(100 %id)
BE736639 adenocarcinoma, Pancreas .g 100 to 632 1 to 548   available from MGC,   548/915
(59 %)
17 diff
(98.2 %id)
BX491700   .g 102 to 612 1 to 511       511/511
(100 %)
2 diff
(99.7 %id)
DA491491 brain .g 103 to 687 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DB036593 testis .g 103 to 672 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB065918 testis .g 103 to 655 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB235972 trachea .g 103 to 683 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB287783 uterus .g 103 to 667 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA242728 brain .g 106 to 674 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB076912 testis .g 108 to 657 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA473083   .g 109 to 679 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB063247 testis .g 109 to 655 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BU167441 melanotic melanoma, skin .g 115 to 743 5 to 633   AAA   629/633
(99 %)
6 diff
(99.1 %id)
DA726328   .g 115 to 669 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DR005926 Prostate .g 115 to 833 1 to 717       717/722
(99 %)
11 diff
(98.5 %id)
DA490151 brain .g 117 to 687 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA760299   .g 118 to 667 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB086353 testis .g 119 to 660 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB112117 thymus .g 119 to 563 2 to 446   capped   445/445
(100 %)
0 diff
(100 %id)
DB212427 trachea .g 119 to 646 2 to 529   capped   528/528
(100 %)
2 diff
(99.7 %id)
DB466484 hippocampus .g 120 to 550 1 to 432       432/432
(100 %)
5 diff
(98.9 %id)
DB475658 hippocampus .g 120 to 593 1 to 474       474/474
(100 %)
0 diff
(100 %id)
DB478799 hippocampus .g 120 to 395 1 to 277       277/278
(99 %)
5 diff
(98.3 %id)
AU128566   .g 120 to 600 2 to 482   capped   481/481
(100 %)
0 diff
(100 %id)
DA121258 cerebellum .g 121 to 663 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA713488   .g 121 to 649 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
DB278536 uterus .g 121 to 626 2 to 507   capped   506/506
(100 %)
0 diff
(100 %id)
DB089405 testis .g 126 to 683 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB279026 uterus .g 126 to 677 2 to 557   capped   556/556
(100 %)
5 diff
(99.2 %id)
DB285985 uterus .g 128 to 679 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA319431 hippocampus .g 136 to 702 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DB082710 testis .g 140 to 695 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DB061847 testis .g 147 to 705 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA724766   .g 155 to 711 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
BU856350 ovary, teratocarcinoma, cell line .g 173 to 645 1 to 475   AAA   475/512
(92 %)
3 diff
(99.5 %id)
DW438241 Liver .g 181 to 415 12 to 246       235/246
(95 %)
6 diff
(97.6 %id)
DA723715   .g 184 to 756 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
AL514440 neuroblastoma, placenta .g 188 to 1236 19 to 1061       1043/1153
(90 %)
19 diff
(98.4 %id)
AL705543 human skeletal muscle .g 193 to 668 1 to 476       476/476
(100 %)
1 diff
(99.8 %id)
DB065516 testis .g 209 to 740 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
D90453   .g 210 to 2333 1 to 2120 exact tiling clone,   2120/2120
(100 %)
4 diff
(99.9 %id)
CN369307 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .g 212 to 641 1 to 430       430/430
(100 %)
2 diff
(99.6 %id)
DA606758   .g 212 to 776 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA853150 placenta .g 212 to 748 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA861471 placenta .g 212 to 786 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB061802 testis .g 212 to 765 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DB077223 testis .g 212 to 787 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB287598 uterus .g 212 to 786 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB062386 testis .g 222 to 773 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BF031512 hypernephroma, Kidney .g 236 to 658 1 to 427       427/640
(66 %)
10 diff
(98.5 %id)
EB362147 eye, lens .g 243 to 674 448 to 20   AAA   429/432
(99 %)
5 diff
(98.9 %id)
CA397908 eye, RPE/choroid .g 252 to 832 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BJ990706 hepatoblastoma .g 1773 to 2312 540 to 1   tiling clone,   540/540
(100 %)
0 diff
(100 %id)
AL514439 neuroblastoma, placenta .g 3115 to 4115 992 to 1   tiling clone,   992/992
(100 %)
15 diff
(98.5 %id)
DB365733   .g 3551 to 4111 556 to 1       556/556
(100 %)
10 diff
(98.3 %id)
BX648808 human esophagus tumor .h 1 to 4068 3 to 4069 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 4069/4069
(100 %)
4 diff
(100.0 %id)
AF247820   .i 1 to 3918 1 to 3918 exact tiling clone, AAA Possibly primed on the genome, locally A rich (23/23 A in genome downstream of last aligned base) 3918/3918
(100 %)
0 diff
(100 %id)
T39757 fetal spleen, Spleen .i 2165 to 2436 1 to 272       272/272
(100 %)
2 diff
(99.3 %id)
T39748 fetal spleen, Spleen .i 2165 to 2440 1 to 276       276/276
(100 %)
2 diff
(99.3 %id)
T39774 fetal spleen, Spleen .i 2165 to 2447 1 to 285       285/285
(100 %)
6 diff
(97.9 %id)
T39767 fetal spleen, Spleen .i 2165 to 2440 1 to 276       276/276
(100 %)
3 diff
(99.0 %id)
T39784 fetal spleen, Spleen .i 2165 to 2446 1 to 282       282/282
(100 %)
0 diff
(100 %id)
CB160732 Liver .i 2198 to 2835 8 to 645       638/645
(98 %)
6 diff
(99.1 %id)
AI826107 anaplastic oligodendroglioma, brain .i 3437 to 3921 485 to 1       485/485
(100 %)
5 diff
(99.0 %id)
AI290024 serous papillary carcinoma, high grade, 2pooled tumors, uterus .i 3477 to 3868 389 to 1       389/390
(99 %)
8 diff
(98.0 %id)
AW771414 colon, juvenile granulosa tumor .i 3504 to 3925 422 to 1       422/422
(100 %)
0 diff
(100 %id)
T40785 fetal spleen, Spleen .i 3581 to 3921 341 to 1       341/342
(99 %)
2 diff
(99.5 %id)
T40771 fetal spleen, Spleen .i 3584 to 3921 337 to 1       337/337
(100 %)
4 diff
(98.9 %id)
T40780 fetal spleen, Spleen .i 3588 to 3921 333 to 1       333/333
(100 %)
3 diff
(99.1 %id)
AW079215 colon, juvenile granulosa tumor .i 3621 to 3925 305 to 1       305/305
(100 %)
2 diff
(99.4 %id)
T40792 fetal spleen, Spleen .i 3681 to 3921 240 to 1       240/240
(100 %)
1 diff
(99.6 %id)
AA548067 adrenal adenoma, adrenal gland .i 3773 to 3923 151 to 1       151/151
(100 %)
0 diff
(100 %id)
AK304729 uterus .j 1 to 1938 1 to 1938 exact tiling clone,   1938/1938
(100 %)
1 diff
(100.0 %id)
DC422594 uterus .j 1 to 477 1 to 477       477/477
(100 %)
1 diff
(99.8 %id)
DA215596 brain .k 1 to 505 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
DA585648 lung .k 1 to 610 2 to 611   capped   610/611
(99 %)
3 diff
(99.6 %id)
DA858021 placenta .k 1 to 542 2 to 543   tiling clone, capped   542/542
(100 %)
0 diff
(100 %id)
DA851260 placenta .k 62 to 635 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA851829 placenta .k 62 to 640 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
AL554932 placenta, Placenta Cot 25-normalized .k 76 to 1003 1 to 928   tiling clone,   928/928
(100 %)
5 diff
(99.5 %id)
DB214722 trachea .k 117 to 667 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA853388 placenta .k 176 to 743 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
AL698975 human skeletal muscle .k 951 to 1601 1 to 650   tiling clone,   650/650
(100 %)
1 diff
(99.9 %id)
CN314571 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .l 1 to 693 1 to 693 exact tiling clone,   693/693
(100 %)
0 diff
(100 %id)
BX482463   .m 1 to 411 1 to 411 exact tiling clone,   411/411
(100 %)
0 diff
(100 %id)
CN483192 eye .n 1 to 615 1 to 615 exact tiling clone,   615/615
(100 %)
0 diff
(100 %id)
DA942120 Spleen .o 1 to 591 2 to 592 exact tiling clone, capped   591/591
(100 %)
0 diff
(100 %id)
DW419237 Liver .p 1 to 389 18 to 406 exact tiling clone,   389/406
(95 %)
6 diff
(98.6 %id)
DA652071   .q 1 to 496 2 to 498 R19L L20T E21R A22S E23R ... tiling clone, capped   497/497
(100 %)
2 diff
(99.6 %id)
BU567036 mixed (pool of 40 RNAs) .r 1 to 195 1 to 195 K64X tiling clone,   195/278
(70 %)
3 diff
(99.0 %id)
BX503085 Liver .s 1 to 444 1 to 444 T18A tiling clone,   444/444
(100 %)
3 diff
(99.4 %id)
AK022456 mammary gland .t-u 1 to 1625 2 to 1626 exact tiling clone, available from FLJ,   1626/1626
(100 %)
2 diff
(99.9 %id)
AU122611 mammary gland .t-u 1 to 883 2 to 887   capped   886/886
(100 %)
18 diff
(98.0 %id)
ES313095 beard hair, skin .t-u 313 to 496 1 to 183       183/183
(100 %)
2 diff
(99.0 %id)
CN360063 embryonic stem cells, DMSO-treated H9 cellline .t-u 317 to 1023 1 to 707       707/707
(100 %)
0 diff
(100 %id)
AW300144 Kidney .t-u 378 to 979 615 to 3       613/615
(99 %)
0 diff
(100 %id)
BF001849 colon, colon tumor, RER+ .t-u 393 to 976 584 to 1       584/586
(99 %)
1 diff
(99.9 %id)
BF448291 carcinoid, lung .t-u 393 to 980 588 to 1       588/588
(100 %)
0 diff
(100 %id)
BG622884 placenta .t-u 399 to 1021 1 to 620       620/620
(100 %)
5 diff
(99.2 %id)
AK021691 whole embryo, mainly head .t-u 455 to 2630 1 to 2176 exact tiling clone, available from FLJ,   2176/2176
(100 %)
4 diff
(99.9 %id)
AU118731 whole embryo, mainly head .t-u 456 to 1279 2 to 825 exact capped   824/824
(100 %)
2 diff
(99.8 %id)
BE220076 carcinoid, lung .t-u 533 to 976 444 to 1       444/444
(100 %)
0 diff
(100 %id)
AI338491   .t-u 535 to 980 448 to 1       448/448
(100 %)
5 diff
(98.9 %id)
AI798381 ovary, tumor, 5 pooled (see description) .t-u 540 to 980 441 to 1       441/441
(100 %)
0 diff
(100 %id)
DA023661   .t-u 653 to 1214 2 to 563 exact capped   562/562
(100 %)
0 diff
(100 %id)
BX470683   .t-u 702 to 1262 1 to 561 exact     561/561
(100 %)
0 diff
(100 %id)
CR743018   .t-u 914 to 1531 1 to 618       618/620
(99 %)
1 diff
(99.9 %id)
DA019850   .t-u 975 to 1539 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
BE929801 placenta_normal .t-u 1085 to 1547 1 to 462       462/462
(100 %)
13 diff
(97.2 %id)
AU148146 mammary gland .t-u 1085 to 1625 538 to 1       538/538
(100 %)
14 diff
(97.4 %id)
AA643791   .t-u 1112 to 1462 9 to 358       350/358
(97 %)
6 diff
(98.4 %id)
AI660901 colon, colonic mucosa from 5 ulcerative colitispatients .t-u 1138 to 1623 504 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 486/488
(99 %)
0 diff
(100 %id)
AI677690 pooled .t-u 1140 to 1625 487 to 1       487/487
(100 %)
8 diff
(98.4 %id)
N99557 liver and spleen .t-u 1151 to 1363 1 to 214       214/214
(100 %)
1 diff
(99.6 %id)
AW662382 colon, moderately-differentiated adenocarcinoma .t-u 1224 to 1634 411 to 1       411/411
(100 %)
0 diff
(100 %id)
AA679571 liver and spleen .t-u 1229 to 1623 395 to 1       395/395
(100 %)
0 diff
(100 %id)
BG571477 placenta .t-u 1244 to 1561 1 to 322       322/987
(32 %)
5 diff
(99.5 %id)
BX503880   .t-u 1249 to 1903 1 to 656       656/656
(100 %)
2 diff
(99.7 %id)
AA770571 carcinoid, lung .t-u 1279 to 1634 356 to 1       356/356
(100 %)
0 diff
(100 %id)
CN395605 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .t-u 1284 to 1529 1 to 246       246/246
(100 %)
1 diff
(99.6 %id)
FN077204 breast carcinoma .t-u 1310 to 1399 88 to 1     Submitted on the opposite strand 88/89
(98 %)
2 diff
(97.8 %id)
AA541556 metastatic prostate bone lesion .t-u 1448 to 1634 187 to 1       187/194
(96 %)
2 diff
(99.0 %id)
AA133908 muscle, skeletal muscle .t-u 1622 to 1962 1 to 343       343/343
(100 %)
2 diff
(99.5 %id)
CB044979 colon, juvenile granulosa tumor .t-u 1631 to 1777 12 to 161   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/20 A in genome downstream of last aligned base) 150/161
(93 %)
6 diff
(96.3 %id)
CB044978 colon, juvenile granulosa tumor .t-u 1637 to 1777 157 to 17   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/20 A in genome downstream of last aligned base) 141/141
(100 %)
1 diff
(99.3 %id)
AA456389 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .t-u 1704 to 2100 1 to 397   fully sequenced, Possibly primed on the genome, locally A rich (16/20 A in genome downstream of last aligned base) 397/397
(100 %)
1 diff
(99.8 %id)
BX119883 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .t-u 1705 to 2360 1 to 656       656/667
(98 %)
1 diff
(99.9 %id)
BX495477 Liver .t-u 1782 to 2311 1 to 530       530/530
(100 %)
2 diff
(99.7 %id)
CB962565 Blood vessels - aorta, basilar and artery .t-u 1832 to 2420 1 to 585       585/626
(93 %)
11 diff
(98.3 %id)
N71549 liver and spleen .t-u 1863 to 2062 202 to 2       201/202
(99 %)
0 diff
(100 %id)
DA343097 substantia nigra .t-u 1869 to 2350 2 to 484   capped   483/483
(100 %)
1 diff
(99.8 %id)
BF446003 breast, invasive ductal carcinoma, 3 pooled samples .t-u 1869 to 2322 1 to 455     Submitted on the opposite strand 455/455
(100 %)
3 diff
(99.4 %id)
AU145225 whole embryo, mainly head .t-u 2052 to 2630 578 to 1       578/578
(100 %)
14 diff
(97.6 %id)
AA455920 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .t-u 2070 to 2379 332 to 25   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/20 A in genome downstream of last aligned base) 308/308
(100 %)
7 diff
(97.8 %id)
DB108482 thymus .t-u 2072 to 2651 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB110703 thymus .t-u 2072 to 2646 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
TI_154089256   .t-u 2080 to 2630 642 to 93   AAA   550/550
(100 %)
8 diff
(98.6 %id)
BQ422944 melanotic melanoma, skin .t-u 2172 to 2983 1 to 821   tiling clone,   821/865
(94 %)
15 diff
(98.3 %id)
CA432847 mixed .t-u 2197 to 2630 452 to 19   AAA   434/434
(100 %)
1 diff
(99.8 %id)
CN393838 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .t-u 2303 to 2964 6 to 667       662/667
(99 %)
6 diff
(99.2 %id)
CN393837 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .t-u 2712 to 3409 1 to 698   tiling clone,   698/698
(100 %)
0 diff
(100 %id)
BE010986 breast_normal .t-u 2983 to 3306 1 to 325       325/343
(94 %)
3 diff
(99.2 %id)
BF995164 placenta_normal .t-u 3009 to 3271 18 to 279       262/280
(93 %)
11 diff
(96.1 %id)
BX508833   .t-u 3125 to 3632 1 to 508   tiling clone,   508/508
(100 %)
0 diff
(100 %id)
BX649088 Liver .u 1 to 2668 1 to 2665 W87L tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 2665/2665
(100 %)
10 diff
(99.7 %id)
DA601722   .u 890 to 1460 2 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
BM772971 stomach .u 1182 to 1820 1 to 639       639/639
(100 %)
0 diff
(100 %id)
DR980028 placenta .u 1227 to 1294 1 to 67     Submitted on the opposite strand 67/70
(95 %)
3 diff
(95.8 %id)
CB150022 cervix, Uterine .u 1347 to 1881 1 to 535       535/535
(100 %)
0 diff
(100 %id)
FN102155 breast carcinoma .u 1365 to 1466 103 to 1     Submitted on the opposite strand 103/104
(99 %)
1 diff
(99.1 %id)
FN146296 breast carcinoma .u 1391 to 1496 109 to 1     Submitted on the opposite strand 109/109
(100 %)
1 diff
(99.1 %id)
BM314023 insulinoma, Pancreas .u 1397 to 1929 1 to 533   tiling clone,   533/533
(100 %)
5 diff
(99.1 %id)
BP420772 small intestine .u 1518 to 2011 1 to 494     Submitted on the opposite strand 494/494
(100 %)
0 diff
(100 %id)
BP423546 small intestine .u 1518 to 2067 1 to 550     Submitted on the opposite strand 550/550
(100 %)
0 diff
(100 %id)
CV573441 cornea, eye .u 1520 to 2131 1 to 612       612/612
(100 %)
0 diff
(100 %id)
AJ223812   .u 1545 to 2672 1 to 1129       1129/1130
(99 %)
7 diff
(99.4 %id)
FN125727 breast carcinoma .u 1604 to 1686 1 to 83       83/83
(100 %)
4 diff
(95.2 %id)
BC015839 Prostate .u 1641 to 2667 4 to 1026   available from MGC, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 1023/1024
(99 %)
4 diff
(99.7 %id)
BF930526 nervous_tumor .u 1667 to 2049 70 to 450       381/451
(84 %)
44 diff
(90.3 %id)
CR591226 Neuroblastoma Cot 25-normalized .u 1695 to 2672 1 to 978       978/978
(100 %)
2 diff
(99.8 %id)
BQ005816 Chondrosarcoma, Left Pubic Bone .u 1718 to 2467 765 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 747/747
(100 %)
7 diff
(99.1 %id)
TI_154108106   .u 1723 to 2668 1014 to 73   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 942/1017
(92 %)
18 diff
(98.3 %id)
CN314586 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .u 1730 to 2472 1 to 743       743/743
(100 %)
8 diff
(99.0 %id)
CB163686 Liver .u 1749 to 2351 1 to 603       603/603
(100 %)
2 diff
(99.7 %id)
EL955664 eyeball .u 1783 to 2256 1 to 474       474/474
(100 %)
6 diff
(98.8 %id)
TI_151775091   .u 1804 to 2332 82 to 622       541/1141
(47 %)
38 diff
(96.7 %id)
TI_154099457   .u 1819 to 2668 937 to 92   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 846/1145
(73 %)
100 diff
(91.3 %id)
BG435381 placenta .u 1834 to 2511 1 to 677       677/679
(99 %)
6 diff
(99.2 %id)
TI_149310620   .u 1840 to 2668 907 to 89   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 887/922
(96 %)
28 diff
(97.0 %id)
CA447404 Chondrosarcoma, Left Pelvis .u 1867 to 2668 820 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 802/805
(99 %)
0 diff
(100 %id)
TI_154107682   .u 1878 to 2668 875 to 95   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 781/943
(82 %)
12 diff
(98.8 %id)
FN076549 breast carcinoma .u 1891 to 1971 1 to 79       79/80
(98 %)
7 diff
(91.3 %id)
ES311760 frontal balding hair, skin .u 1897 to 2044 1 to 148       148/148
(100 %)
2 diff
(98.7 %id)
FN068515 breast carcinoma .u 1959 to 2035 1 to 76       76/76
(100 %)
1 diff
(98.7 %id)
FN081827 breast carcinoma .u 1962 to 2049 1 to 87       87/93
(93 %)
2 diff
(97.9 %id)
FN056838 breast carcinoma .u 1968 to 2054 1 to 92       92/92
(100 %)
5 diff
(94.6 %id)
TI_149278155   .u 1998 to 2668 755 to 85   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 671/671
(100 %)
4 diff
(99.5 %id)
BE841170 stomach_normal .u 2000 to 2344 377 to 29       349/382
(91 %)
35 diff
(90.9 %id)
BQ335532 marrow .u 2028 to 2194 162 to 2       161/162
(99 %)
0 diff
(100 %id)
TI_149294240   .u 2028 to 2750 799 to 78   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 722/722
(100 %)
3 diff
(99.6 %id)
FN095470 breast carcinoma .u 2046 to 2138 1 to 90       90/91
(98 %)
4 diff
(95.7 %id)
TI_154010330   .u 2055 to 2668 720 to 104   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 617/968
(63 %)
12 diff
(98.8 %id)
FN126086 breast carcinoma .u 2075 to 2183 1 to 109       109/109
(100 %)
2 diff
(98.2 %id)
BU683034 lung .u 2078 to 2750 691 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 673/673
(100 %)
1 diff
(99.9 %id)
BI013179 lung_tumor .u 2096 to 2493 36 to 432       397/435
(91 %)
14 diff
(96.8 %id)
CR600262 Placenta Cot 25-normalized .u 2132 to 2619 1 to 488       488/488
(100 %)
1 diff
(99.8 %id)
FN115140 breast carcinoma .u 2160 to 2265 1 to 105       105/105
(100 %)
1 diff
(99.1 %id)
FN099707 breast carcinoma .u 2167 to 2261 1 to 98       98/102
(96 %)
3 diff
(97.1 %id)
N83985   .u 2173 to 2324 1 to 151       151/154
(98 %)
16 diff
(89.7 %id)
FN148959 breast carcinoma .u 2302 to 2405 105 to 1     Submitted on the opposite strand 105/106
(99 %)
6 diff
(94.4 %id)
EC515791 Prostate .u 2321 to 2426 1 to 104       104/104
(100 %)
6 diff
(94.3 %id)
FN092763 breast carcinoma .u 2326 to 2426 97 to 1     Submitted on the opposite strand 97/97
(100 %)
3 diff
(97.0 %id)
C16108   .u 2335 to 2561 1 to 227       227/227
(100 %)
0 diff
(100 %id)
FN156785 breast carcinoma .u 2340 to 2454 1 to 115       115/115
(100 %)
0 diff
(100 %id)
CN314587 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .u 2373 to 2759 1 to 387   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 387/387
(100 %)
0 diff
(100 %id)
FN129737 breast carcinoma .u 2376 to 2493 113 to 3     Submitted on the opposite strand 111/113
(98 %)
0 diff
(100 %id)
FN118580 breast carcinoma .u 2686 to 2757 76 to 4     Submitted on the opposite strand 73/76
(96 %)
0 diff
(100 %id)
DA945492 Spleen .va-u 1 to 560 2 to 562 V42C N43Q K45Q F46V S47L ... tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
BM504381 insulinoma, Pancreas .va-u 97 to 562 1 to 466   tiling clone,   466/466
(100 %)
5 diff
(99.0 %id)
CK905472 insulinoma, Pancreas .va-u 97 to 673 1 to 577   tiling clone,   577/577
(100 %)
6 diff
(99.0 %id)
CK905471 insulinoma, Pancreas .va-u 2013 to 2462 451 to 1   tiling clone,   451/451
(100 %)
10 diff
(97.8 %id)
BG988845 head_neck .vb-u 1 to 514 29 to 544   tiling clone,   516/544
(94 %)
6 diff
(98.9 %id)
AW891024 nervous_tumor .vb-u 18 to 266 14 to 261   tiling clone,   248/261
(95 %)
6 diff
(97.8 %id)
AW293204   .vb-u 125 to 520 1 to 396   tiling clone, Submitted on the opposite strand 396/396
(100 %)
5 diff
(98.8 %id)
BE467762 carcinoid, lung .vb-u 143 to 495 1 to 353     Submitted on the opposite strand 353/353
(100 %)
0 diff
(100 %id)
BE549734 carcinoid, lung .vb-u 143 to 495 1 to 353     Submitted on the opposite strand 353/353
(100 %)
0 diff
(100 %id)
DA117108 cerebellum .vb-u 312 to 863 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BX486432   .vb-u 445 to 1046 1 to 602   tiling clone,   602/602
(100 %)
2 diff
(99.7 %id)
CA449886 Chondrosarcoma, Left Pelvis .vb-u 746 to 1296 567 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 549/549
(100 %)
6 diff
(99.0 %id)
BF000374 colon, colon tumor, RER+ .vb-u 869 to 1295 427 to 1       427/427
(100 %)
1 diff
(99.8 %id)
BF435561 sciatic nerve .vb-u 1109 to 1694 600 to 12 S12K V13S F14V P15F S16P ... tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 589/589
(100 %)
2 diff
(99.7 %id)
BQ721217 sympathetic trunk .vb-u 1544 to 2193 80 to 741   tiling clone,   662/1034
(64 %)
6 diff
(99.5 %id)
BE175327 head_neck .vb-u 1893 to 2100 255 to 47   tiling clone, Submitted on the opposite strand 209/269
(77 %)
0 diff
(100 %id)
BF063186 colon, colon tumor, RER+ .vc-u 1 to 471 475 to 5   tiling clone,   471/476
(98 %)
0 diff
(100 %id)
CR742076   .vc-u 19 to 474 119 to 574   tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 456/574
(79 %)
6 diff
(99.0 %id)
AA436250 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vc-u 19 to 474 455 to 1       455/455
(100 %)
1 diff
(99.8 %id)
AI084336 parathyroid gland, parathyroid tumor .vc-u 85 to 480 396 to 1       396/396
(100 %)
0 diff
(100 %id)
BX103070 liver and spleen .vc-u 103 to 767 1 to 665 exact     665/665
(100 %)
0 diff
(100 %id)
H48677 liver and spleen .vc-u 104 to 474 1 to 373       373/374
(99 %)
3 diff
(99.2 %id)
AA970509 pooled .vc-u 112 to 474 363 to 1       363/363
(100 %)
0 diff
(100 %id)
AW589805 pooled germ cell tumors .vc-u 119 to 469 354 to 4       351/354
(99 %)
0 diff
(100 %id)
AA991879 germ cell tumor .vc-u 120 to 474 356 to 1       356/356
(100 %)
1 diff
(99.8 %id)
FN159070 breast carcinoma .vc-u 296 to 396 1 to 97       97/103
(94 %)
5 diff
(95.2 %id)
BQ575070 Chondrosarcoma Grade II, Left Pelvis .vc-u 353 to 963 629 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 611/639
(95 %)
2 diff
(99.7 %id)
DB276614 uterus .vc-u 417 to 962 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
BF940741 fibrotheoma, ovary .vc-u 434 to 981 1 to 549     Submitted on the opposite strand 549/549
(100 %)
3 diff
(99.5 %id)
AI038066 liver and spleen .vc-u 564 to 1086 523 to 1       523/523
(100 %)
0 diff
(100 %id)
AA679295 liver and spleen .vc-u 565 to 1112 547 to 1       547/547
(100 %)
1 diff
(99.9 %id)
AA705063 liver and spleen .vc-u 658 to 1130 473 to 1   tiling clone,   473/473
(100 %)
2 diff
(99.6 %id)
H48508 liver and spleen .vc-u 665 to 1112 460 to 1       460/462
(99 %)
18 diff
(96.2 %id)
BQ370450 placenta_normal .vc-u 779 to 1171 397 to 3   tiling clone,   395/397
(99 %)
0 diff
(100 %id)
BE707052 head_neck .vc-u 821 to 997 1 to 177       177/177
(100 %)
0 diff
(100 %id)
AA910902 carcinoid, lung .vd-u 1 to 296 296 to 1   tiling clone,   296/296
(100 %)
0 diff
(100 %id)
DA515469 brain .vd-u 52 to 588 2 to 542   tiling clone, capped   541/541
(100 %)
3 diff
(99.5 %id)
DA371633 thalamus .vd-u 340 to 893 2 to 555   tiling clone, capped   554/554
(100 %)
1 diff
(99.9 %id)
BF475987 Prostate .vd-u 846 to 1048 204 to 2   tiling clone,   203/204
(99 %)
0 diff
(100 %id)
AW292594   .vd-u 930 to 1066 136 to 1   tiling clone,   136/136
(100 %)
2 diff
(98.6 %id)
DB277761 uterus .ve 1 to 458 2 to 460   tiling clone, capped   459/459
(100 %)
4 diff
(99.2 %id)
DA320682 hippocampus .ve 25 to 546 2 to 523   tiling clone, capped   522/522
(100 %)
4 diff
(99.3 %id)
AL706245 human skeletal muscle .ve 83 to 836 1 to 755 G22R K23Q P25A W26L M27D ... tiling clone,   755/755
(100 %)
3 diff
(99.7 %id)
DA190009 amygdala .ve 85 to 657 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA852538 placenta .ve 90 to 629 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
DA861871 placenta .ve 90 to 645 2 to 559   capped   558/558
(100 %)
5 diff
(99.2 %id)
DA993735 synovial membrane tissue from rheumatioidarthritis .ve 131 to 666 2 to 537   tiling clone, capped   536/536
(100 %)
0 diff
(100 %id)
AL602401 human skeletal muscle .ve 141 to 710 1 to 570       570/570
(100 %)
2 diff
(99.7 %id)
DW418059 Liver .ve 170 to 456 18 to 304       287/304
(94 %)
0 diff
(100 %id)
DW425200 Liver .ve 170 to 438 18 to 286       269/286
(94 %)
4 diff
(98.7 %id)
DW432921 Liver .ve 170 to 416 18 to 264       247/264
(93 %)
0 diff
(100 %id)
AL703086 human skeletal muscle .ve 336 to 757 1 to 422       422/422
(100 %)
14 diff
(96.7 %id)
BG536098 lung .vf-u 1 to 675 1 to 678 H23R tiling clone,   678/679
(99 %)
18 diff
(97.4 %id)
AL599839   .vf-u 166 to 441 1 to 277       277/277
(100 %)
3 diff
(99.0 %id)
DR979871 placenta .vf-u 340 to 470 1 to 130     Submitted on the opposite strand 130/133
(97 %)
4 diff
(97.0 %id)
DW466077 Liver .vf-u 456 to 792 17 to 354   tiling clone,   338/354
(95 %)
6 diff
(98.4 %id)
AA808996 breast, normal ductal tissue .vf-u 509 to 760 1 to 252   tiling clone,   252/252
(100 %)
4 diff
(98.5 %id)
BX484638   .vg-u 1 to 480 1 to 479 exact tiling clone,   479/479
(100 %)
3 diff
(99.4 %id)
AI983834 adenocarcinoma, Pancreas .vg-u 274 to 716 539 to 97   tiling clone,   443/539
(82 %)
0 diff
(100 %id)
DA686922   .vh 1 to 542 2 to 543   tiling clone, capped   542/542
(100 %)
1 diff
(99.9 %id)
DA690313   .vh 1 to 586 2 to 587 I25T tiling clone, capped   586/586
(100 %)
3 diff
(99.5 %id)
BP341987 stomach mucosa .vi 1 to 580 1 to 580 exact tiling clone,   580/580
(100 %)
0 diff
(100 %id)
CN369315 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .vj 1 to 326 2 to 328   tiling clone,   328/328
(100 %)
1 diff
(99.7 %id)
AW859944 colon .vj 123 to 277 156 to 3       154/156
(98 %)
0 diff
(100 %id)
AW859989 colon .vj 123 to 277 156 to 3       154/156
(98 %)
0 diff
(100 %id)
BE825247 colon_normal .vj 232 to 551 19 to 337   tiling clone,   319/337
(94 %)
7 diff
(98.0 %id)
AA406011 ovarian tumor, ovary .vk 1 to 402 1 to 402   tiling clone, fully sequenced,   402/402
(100 %)
0 diff
(100 %id)
AA402898 ovarian tumor, ovary .vk 372 to 539 168 to 1   tiling clone, fully sequenced,   168/168
(100 %)
0 diff
(100 %id)
AL698794 human skeletal muscle .vl-u 1 to 163 1 to 163 exact tiling clone,   163/163
(100 %)
0 diff
(100 %id)
AK022222 mammary gland Gene CALD1, variant not shown       available from FLJ,      
BF356567 head_neck Gene CALD1, variant not shown              
BF356568 head_neck Gene CALD1, variant not shown              
BF733911 amnion_normal Gene CALD1, variant not shown         Submitted on the opposite strand    
BF851472 lung_normal Gene CALD1, variant not shown              
BF913354 uterus_tumor Gene CALD1, variant not shown              
T39422 placenta Gene CALD1, variant not shown              
T40578 placenta Gene CALD1, variant not shown              
AI911362 pooled Gene CALD1, variant not shown              
AW075298 colon, juvenile granulosa tumor Gene CALD1, variant not shown              
AW183421 pooled Gene CALD1, variant not shown              
AU147402 mammary gland Gene CALD1, variant not shown              
AU121619 mammary gland Gene CALD1, variant not shown       capped      
DA664123   Gene CALD1, variant not shown       capped      
AU158574 placenta Gene CALD1, variant not shown              
DA834176 placenta Gene CALD1, variant not shown       capped      
DB071723 testis Gene CALD1, variant not shown       capped      
DB340249 testis Gene CALD1, variant not shown              
BJ998081 Wilms tumor Gene CALD1, variant not shown              
BJ998082 Wilms tumor Gene CALD1, variant not shown              
399 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t-u, .u, .va-u, .vb-u, .vc-u, .vd-u, .ve, .vf-u, .vg-u, .vh, .vi, .vj, .vk, .vl-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI