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Gene CACNB4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
89 supporting clones for gene CACNB4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_000726.3   .a 1 to 7979 1 to 7979 exact RefSeq,   7979/7979
(100 %)
0 diff
(100 %id)
U95020 brain .a 1 to 1823 1 to 1823 F245S tiling clone,   1823/1823
(100 %)
1 diff
(100.0 %id)
BC075049 Brain, PCR rescued clones .a 50 to 1673 1 to 1624 exact tiling clone, available from MGC,   1624/1624
(100 %)
0 diff
(100 %id)
AF038852   .a 91 to 2124 1 to 2034   tiling clone,   2034/2034
(100 %)
1 diff
(100.0 %id)
DB118580 thymus .b 1 to 234 2 to 235   tiling clone, capped   234/322
(72 %)
1 diff
(99.7 %id)
BX279713   .b 172 to 673 1 to 502       502/502
(100 %)
0 diff
(100 %id)
NM_001005746.2   .b 172 to 8100 1 to 7929 exact RefSeq,   7929/7929
(100 %)
0 diff
(100 %id)
AK316045 hippocampus .b 181 to 1887 1 to 1707 exact     1707/1707
(100 %)
0 diff
(100 %id)
DC330539 hippocampus .b 181 to 742 1 to 562       562/562
(100 %)
0 diff
(100 %id)
BP360802 thalamus .b 188 to 771 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
AK294398 amygdala .b 198 to 2061 1 to 1864 exact tiling clone,   1864/1864
(100 %)
0 diff
(100 %id)
DC316685 amygdala .b 198 to 761 1 to 565       565/565
(100 %)
3 diff
(99.5 %id)
NM_001005747.2   .c 1 to 8066 2 to 8067 exact RefSeq,   8067/8067
(100 %)
0 diff
(100 %id)
AK290049 hippocampus .c 19 to 1999 1 to 1981 exact tiling clone,   1981/1981
(100 %)
1 diff
(100.0 %id)
DA337698 hippocampus .c 20 to 611 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DB171013 kidney, tumor tissue .c 20 to 592 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA318399 hippocampus .c 24 to 586 9 to 571   capped   563/563
(100 %)
0 diff
(100 %id)
DA786760 brain .c 25 to 600 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BP229182 brain .c 31 to 613 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
AY054985 Spinal cord .c 36 to 1910 8 to 1882 D12N F211S L277V S407T tiling clone,   1875/1882
(99 %)
11 diff
(99.5 %id)
NM_001145798.1   .d 1 to 7793 1 to 7793 exact RefSeq,   7793/7793
(100 %)
0 diff
(100 %id)
AB302276 brain .d 57 to 1445 1 to 1389 exact tiling clone,   1389/1389
(100 %)
0 diff
(100 %id)
R15034 whole brain .d 1508 to 1853 1 to 360   tiling clone,   360/400
(90 %)
19 diff
(95.3 %id)
DA120609 cerebellum .d 1775 to 2306 2 to 533   tiling clone, capped   532/532
(100 %)
3 diff
(99.5 %id)
AL700210 human skeletal muscle .d 1881 to 2606 1 to 728   tiling clone,   728/728
(100 %)
2 diff
(99.8 %id)
DA221984 brain .d 2081 to 2623 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA405405 thalamus .d 2173 to 2722 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
BX484858   .d 2357 to 2942 1 to 586   tiling clone,   586/586
(100 %)
0 diff
(100 %id)
BX111684 whole brain .d 2467 to 2935 484 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 469/469
(100 %)
3 diff
(99.4 %id)
BE856737 pooled .d 2508 to 2946 439 to 1       439/439
(100 %)
1 diff
(99.8 %id)
R41472 whole brain .d 2655 to 2944 296 to 1       296/296
(100 %)
7 diff
(97.7 %id)
DA406090 thalamus .d 2747 to 3215 2 to 470   tiling clone, capped   469/469
(100 %)
1 diff
(99.8 %id)
DA105988 cerebellum .d 3067 to 3616 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA101035 cerebellum .d 3081 to 3642 2 to 563   tiling clone, capped   562/562
(100 %)
0 diff
(100 %id)
DA238995 brain .d 3365 to 3954 2 to 591   tiling clone, capped   590/590
(100 %)
0 diff
(100 %id)
DA094072 cerebellum .d 3587 to 4145 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
DA380336 thalamus .d 3588 to 4135 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
DA323461 hippocampus .d 3726 to 4287 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA235335 brain .d 3913 to 4504 2 to 593   tiling clone, capped   592/592
(100 %)
0 diff
(100 %id)
DA247883 brain .d 3980 to 4556 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA220165 brain .d 4060 to 4556 2 to 498   capped   497/497
(100 %)
0 diff
(100 %id)
DA236163 brain .d 4108 to 4699 2 to 594   capped   593/593
(100 %)
2 diff
(99.7 %id)
DA245234 brain .d 4161 to 4738 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DA227143 brain .d 4237 to 4800 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA218880 brain .d 4248 to 4928 2 to 681   capped   680/680
(100 %)
1 diff
(99.9 %id)
DA392651 thalamus .d 4258 to 4835 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
CD358936 testis .d 4388 to 5083 1 to 702       702/938
(74 %)
12 diff
(98.8 %id)
DA148617 amygdala .d 4423 to 4988 2 to 567   tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
CD102724 Pooled-Skin .d 4721 to 5242 1 to 515       515/546
(94 %)
10 diff
(98.2 %id)
DB501859 hypothalamus .d 4792 to 5262 1 to 469       469/469
(100 %)
29 diff
(93.9 %id)
BX951890   .d 4817 to 5351 1 to 535   tiling clone,   535/535
(100 %)
0 diff
(100 %id)
AA460099   .d 5036 to 5316 1 to 281       281/282
(99 %)
1 diff
(99.7 %id)
BU561391 testis .d 5066 to 5764 1 to 702       702/736
(95 %)
11 diff
(98.6 %id)
DA387426 thalamus .d 5156 to 5733 2 to 579   tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
BX488490   .d 5352 to 5769 1 to 418       418/418
(100 %)
0 diff
(100 %id)
DA259921 caudate nucleus .d 5697 to 6261 2 to 568   capped   567/577
(98 %)
2 diff
(99.7 %id)
DA344410 substantia nigra .d 5706 to 6290 2 to 586   tiling clone, capped   585/586
(99 %)
2 diff
(99.7 %id)
AL120155 amygdala .d 5786 to 6049 1 to 264   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 264/264
(100 %)
1 diff
(99.7 %id)
BX106675 brain .d 5973 to 6582 12 to 625   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 614/625
(98 %)
9 diff
(98.6 %id)
CR742895 germinal center B cell .d 5978 to 6439 1 to 462       462/462
(100 %)
0 diff
(100 %id)
AF075047   .d 5980 to 6582 1 to 603   tiling clone, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 603/603
(100 %)
0 diff
(100 %id)
H46537 brain .d 6010 to 6315 1 to 314       314/322
(97 %)
13 diff
(96.0 %id)
H51359 brain .d 6010 to 6288 1 to 281   fully sequenced,   281/281
(100 %)
1 diff
(99.7 %id)
H22074 brain .d 6013 to 6345 1 to 334   fully sequenced,   334/334
(100 %)
2 diff
(99.5 %id)
DB301602 amygdala .d 6044 to 6582 539 to 1       539/539
(100 %)
1 diff
(99.9 %id)
H50520 brain .d 6258 to 6555 306 to 1   fully sequenced,   306/306
(100 %)
2 diff
(99.4 %id)
H51425 brain .d 6273 to 6517 245 to 1       245/245
(100 %)
0 diff
(100 %id)
H22005 brain .d 6315 to 6582 270 to 1   fully sequenced,   270/270
(100 %)
4 diff
(98.6 %id)
AI381407   .d 6338 to 6582 262 to 18   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 245/245
(100 %)
2 diff
(99.2 %id)
H46538 brain .d 6348 to 6566 219 to 1       219/219
(100 %)
0 diff
(100 %id)
BE858009 Prostate .d 6507 to 7034 531 to 4   tiling clone,   528/531
(99 %)
0 diff
(100 %id)
AA748842 germinal center B cell .d 6728 to 7033 325 to 20   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 306/306
(100 %)
1 diff
(99.7 %id)
BX105660 pooled .d 6778 to 7497 1 to 720   tiling clone,   720/720
(100 %)
2 diff
(99.8 %id)
DB311692 thalamus .d 7131 to 7665 536 to 1       536/536
(100 %)
3 diff
(99.5 %id)
AA972729 pooled .d 7181 to 7677 498 to 2       497/498
(99 %)
0 diff
(100 %id)
AI393623 pooled .d 7265 to 7677 414 to 2       413/414
(99 %)
0 diff
(100 %id)
DB311377 thalamus .d 7276 to 7786 515 to 5   tiling clone,   511/515
(99 %)
0 diff
(100 %id)
AA971789 pooled .d 7319 to 7677 360 to 2       359/360
(99 %)
0 diff
(100 %id)
DB573055 hypothalamus .d 7369 to 7788 1 to 422     Submitted on the opposite strand 422/424
(99 %)
22 diff
(94.9 %id)
DB562548 hypothalamus .d 7383 to 7790 1 to 408     Submitted on the opposite strand 408/408
(100 %)
3 diff
(99.3 %id)
DB560326 hypothalamus .d 7463 to 7788 1 to 328     Submitted on the opposite strand 328/330
(99 %)
11 diff
(96.7 %id)
DB556242 hypothalamus .d 7470 to 7788 1 to 320     Submitted on the opposite strand 320/320
(100 %)
12 diff
(96.3 %id)
T23939   .d 7485 to 7793 309 to 1   tiling clone,   309/309
(100 %)
1 diff
(99.7 %id)
BX648679 human amygdala .e 1 to 5335 39 to 5371 T175A tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 5333/5371
(99 %)
16 diff
(99.8 %id)
BP219438 caudate nucleus .f 1 to 583 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
AW134825   .f 484 to 1087 621 to 18   tiling clone, AAA   604/604
(100 %)
0 diff
(100 %id)
DB349776 trachea .g 1 to 519 519 to 1 S79F S96Y tiling clone,   519/519
(100 %)
3 diff
(99.5 %id)
CU444229 epidermis .h 1 to 556 567 to 13 N20I N21I S23A K24R R25E ... tiling clone, Submitted on the opposite strand 555/579
(95 %)
4 diff
(99.4 %id)
CU445573 epidermis .h 1 to 556 568 to 13 V107A A111T tiling clone, Submitted on the opposite strand 556/580
(95 %)
2 diff
(99.7 %id)
CU450357 epidermis .h 1 to 556 564 to 9 A111T tiling clone, Submitted on the opposite strand 556/576
(96 %)
2 diff
(99.7 %id)
DA082068 cerebellum .i 1 to 555 2 to 557 exact tiling clone, capped   556/556
(100 %)
3 diff
(99.5 %id)
DA782833 brain .j 1 to 583 2 to 586 G74R K75G Q76S F77N tiling clone, capped   585/585
(100 %)
1 diff
(99.9 %id)
BF950540 nervous_normal .k-u 1 to 498 1 to 506 L3I S4E C5L S6* tiling clone,   506/506
(100 %)
35 diff
(93.1 %id)
DB118598 thymus Gene CACNB4, variant not shown       capped Suspected internal deletion, this clone was ignored    
AK291378 brain Gene CACNB4, variant not shown         This clone was ignored    
DA779148 brain Gene CACNB4, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI