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Gene CACNA2D2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
94 supporting clones for gene CACNA2D2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF040709   .a 1 to 5482 1 to 5482 S2A tiling clone,   5482/5482
(100 %)
6 diff
(99.9 %id)
NM_001005505.1   .a 143 to 5485 1 to 5343   RefSeq,   5343/5343
(100 %)
0 diff
(100 %id)
AB011130 brain .a 180 to 5482 1 to 5303   tiling clone, available from KIAA,   5303/5303
(100 %)
0 diff
(100 %id)
BC152438 Clones donated by Kazusa DNA Research Inst. .a 180 to 5482 1 to 5303   AAA   5303/5303
(100 %)
0 diff
(100 %id)
NM_001174051.1   .b 1 to 5358 1 to 5358 exact RefSeq,   5358/5358
(100 %)
0 diff
(100 %id)
AJ251368 thyroid .b 39 to 3491 1 to 3453   tiling clone,   3453/3453
(100 %)
1 diff
(100.0 %id)
DA760583   .b 1767 to 2347 2 to 582   tiling clone, capped   581/581
(100 %)
0 diff
(100 %id)
CD621659   .b 2730 to 3318 605 to 15       591/605
(97 %)
10 diff
(98.4 %id)
AK074820   .b 2907 to 5265 1 to 2357   tiling clone, available from FLJ,   2357/2357
(100 %)
1 diff
(100.0 %id)
DA733247   .b 2908 to 3620 2 to 726   capped   725/726
(99 %)
22 diff
(97.0 %id)
DB365119   .b 4691 to 5265 574 to 1   tiling clone,   574/579
(99 %)
15 diff
(97.5 %id)
AI675521 Prostate .b 5106 to 5351 249 to 4       246/249
(98 %)
0 diff
(100 %id)
AA916808 breast .b 5143 to 5357 215 to 1   tiling clone,   215/215
(100 %)
0 diff
(100 %id)
AA906993 carcinoid, lung .b 5145 to 5354 210 to 1       210/210
(100 %)
0 diff
(100 %id)
CA338190 1st pharyngeal arch (pooled) .b 5165 to 5350 1 to 186   AAA   186/186
(100 %)
0 diff
(100 %id)
NM_006030.2   .c 1 to 5337 1 to 5337 exact RefSeq,   5337/5337
(100 %)
0 diff
(100 %id)
AJ251367 heart .c 39 to 3470 1 to 3432   tiling clone,   3432/3432
(100 %)
0 diff
(100 %id)
AF042793   .d 1 to 5272 8 to 5279 exact tiling clone,   5272/5279
(99 %)
7 diff
(99.9 %id)
BE818172 breast_normal .d 177 to 379 20 to 222       204/316
(64 %)
7 diff
(97.8 %id)
DA109727 cerebellum .d 837 to 1392 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BP250236 hippocampus .d 973 to 1558 1 to 588       588/588
(100 %)
3 diff
(99.5 %id)
DA806607 brain .d 1194 to 1739 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
BF986528 placenta_normal .d 1354 to 1624 1 to 270       270/270
(100 %)
4 diff
(98.6 %id)
CN294018 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 1395 to 1974 1 to 580   tiling clone,   580/580
(100 %)
0 diff
(100 %id)
BF849571 lung_normal .d 2000 to 2252 255 to 3     Submitted on the opposite strand 253/255
(99 %)
1 diff
(99.7 %id)
CD621660   .d 2060 to 2874 1 to 816       816/816
(100 %)
9 diff
(98.9 %id)
DA113154 cerebellum .d 2112 to 2696 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
BF879162 lung_tumor .d 2162 to 3182 1 to 158       158/170
(92 %)
5 diff
(97.1 %id)
CD621655   .d 2279 to 2660 1 to 381       381/382
(99 %)
6 diff
(98.5 %id)
CD621656   .d 2280 to 2660 381 to 1       381/382
(99 %)
3 diff
(99.3 %id)
CD621653   .d 2568 to 2658 91 to 1       91/91
(100 %)
0 diff
(100 %id)
CD621654   .d 2568 to 2660 1 to 93       93/94
(98 %)
1 diff
(99.0 %id)
BF082812 breast .d 2693 to 2915 20 to 241       222/241
(92 %)
6 diff
(97.6 %id)
DA134235 alzheimer cortex .d 2715 to 3264 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
BG115894 duodenal adenocarcinoma, cell line, small intestine .d 2790 to 3426 1 to 632       632/937
(67 %)
12 diff
(98.8 %id)
BQ954572 sciatic nerve .d 3019 to 3573 1 to 558       558/928
(60 %)
14 diff
(98.5 %id)
BF766203 colon_est .d 3239 to 3446 1 to 208       208/208
(100 %)
0 diff
(100 %id)
BX391062   .d 3539 to 4292 1 to 757       757/842
(89 %)
23 diff
(97.3 %id)
T80372 whole brain .d 3815 to 4293 1 to 486       486/486
(100 %)
12 diff
(97.6 %id)
AA360556   .d 4144 to 4479 1 to 337       337/338
(99 %)
6 diff
(98.3 %id)
AA301068 testis .d 4150 to 4380 1 to 231       231/231
(100 %)
8 diff
(96.6 %id)
AW959431   .d 4151 to 4798 1 to 650       650/668
(97 %)
27 diff
(96.0 %id)
BE794711 lung, small cell carcinoma .d 4168 to 4928 1 to 758       758/953
(79 %)
14 diff
(98.6 %id)
AL583288 B cells from Burkitt lymphoma .d 4235 to 5217 965 to 3       963/996
(96 %)
0 diff
(100 %id)
BM990784 lung, Lung Focal Fibrosis .d 4258 to 4975 728 to 11   AAA   718/720
(99 %)
2 diff
(99.8 %id)
CB240597 Human Lung Epithelial cells, lung .d 4533 to 5187 668 to 14   AAA   655/655
(100 %)
0 diff
(100 %id)
BX280981 anaplastic oligodendroglioma, brain .d 4650 to 4956 1 to 307       307/307
(100 %)
0 diff
(100 %id)
BQ015791 lung, Metastatic Chondrosarcoma .d 4656 to 5187 545 to 14   AAA   532/532
(100 %)
2 diff
(99.7 %id)
N53512 multiple sclerosis lesions .d 4685 to 5187 511 to 1       511/512
(99 %)
15 diff
(97.1 %id)
BM701762 eye, optic nerve .d 4694 to 5183 1 to 490   AAA   490/490
(100 %)
1 diff
(99.8 %id)
AW118109 pooled .d 4696 to 5176 486 to 6       481/486
(98 %)
0 diff
(100 %id)
AI191453 lung .d 4707 to 5183 477 to 1       477/477
(100 %)
0 diff
(100 %id)
BQ185046 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 4716 to 5182 485 to 19   AAA   467/474
(98 %)
0 diff
(100 %id)
TI_151808896   .d 4716 to 5182 74 to 540   AAA   467/467
(100 %)
1 diff
(99.8 %id)
AI586961 brain, tumor, 5 pooled (see description) .d 4737 to 4969 233 to 1       233/233
(100 %)
0 diff
(100 %id)
AI884536 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 4757 to 5187 431 to 1       431/431
(100 %)
0 diff
(100 %id)
AW302487 brain, three pooled meningiomas .d 4761 to 5184 424 to 1       424/424
(100 %)
0 diff
(100 %id)
AA887514 carcinoid, lung .d 4773 to 5271 499 to 1       499/499
(100 %)
5 diff
(99.0 %id)
AA329137   .d 4799 to 5081 1 to 285       285/285
(100 %)
2 diff
(99.3 %id)
AW952467   .d 4800 to 5272 1 to 473   AAA   473/473
(100 %)
12 diff
(97.5 %id)
AI275868 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 4834 to 5275 443 to 2       442/443
(99 %)
0 diff
(100 %id)
AI027237   .d 4853 to 5272 435 to 16   AAA   420/420
(100 %)
0 diff
(100 %id)
AI563965 anaplastic oligodendroglioma, brain .d 4884 to 5273 390 to 1       390/390
(100 %)
1 diff
(99.8 %id)
R38827 whole brain .d 4885 to 5167 288 to 3       286/288
(99 %)
0 diff
(100 %id)
AI862563 2 pooled tumors (clear cell type), Kidney .d 4905 to 5188 287 to 4       284/287
(98 %)
0 diff
(100 %id)
AI026646   .d 4915 to 5274 360 to 1       360/360
(100 %)
0 diff
(100 %id)
AA994701 pooled .d 4923 to 5274 352 to 1       352/352
(100 %)
0 diff
(100 %id)
AI241832 brain, tumor, 5 pooled (see description) .d 4923 to 5182 285 to 26   AAA   260/260
(100 %)
1 diff
(99.7 %id)
AA422068 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 4925 to 5069 1 to 145       145/145
(100 %)
1 diff
(99.4 %id)
AW771699 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .d 4937 to 5182 246 to 1       246/246
(100 %)
2 diff
(99.2 %id)
BE218388 carcinoid, lung .d 4943 to 5248 303 to 1       303/303
(100 %)
5 diff
(98.4 %id)
BE671662 pooled germ cell tumors .d 4954 to 5187 247 to 14   AAA   234/234
(100 %)
7 diff
(97.1 %id)
AW007700 colon .d 5000 to 5173 198 to 25   AAA   174/174
(100 %)
6 diff
(96.6 %id)
AA534927 colon .d 5001 to 5173 197 to 25   AAA   173/173
(100 %)
0 diff
(100 %id)
AA905569 pooled .d 5094 to 5181 89 to 1       89/89
(100 %)
1 diff
(98.9 %id)
AK310138 stomach .e 159 to 1030 112 to 983 S39P Y40P R41P P42L A45L ... tiling clone, Suspected internal deletion 983/983
(100 %)
0 diff
(100 %id)
T87497 liver and spleen .e 844 to 936 14 to 105       92/107
(85 %)
3 diff
(97.2 %id)
R01464 liver and spleen .e 844 to 1234 12 to 417   tiling clone,   406/418
(97 %)
27 diff
(93.6 %id)
AA300985 testis .e 847 to 1130 1 to 290   tiling clone,   290/291
(99 %)
13 diff
(95.6 %id)
AW959426   .e 848 to 1368 1 to 529   tiling clone,   529/529
(100 %)
29 diff
(94.6 %id)
TI_57178093   .e 1153 to 1914 30 to 791       762/857
(88 %)
6 diff
(99.3 %id)
BI766934 pooled lung and spleen .e 1160 to 1914 1 to 755   tiling clone,   755/789
(95 %)
7 diff
(99.2 %id)
AI970144 pooled germ cell tumors .e 1355 to 1915 561 to 1       561/561
(100 %)
6 diff
(99.0 %id)
R00809 liver and spleen .e 1528 to 1915 397 to 2   tiling clone,   396/398
(99 %)
0 diff
(100 %id)
CR615217 B cells (Ramos cell line) Cot 25-normalized .f 1 to 2526 1 to 2526 exact tiling clone,   2526/2526
(100 %)
0 diff
(100 %id)
AL583348 B cells from Burkitt lymphoma .f 1 to 917 1 to 905 A118X P119X A120X A129X L143F ...     905/989
(91 %)
26 diff
(97.4 %id)
DA189731 amygdala .g 1 to 578 2 to 579   tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
CD621657   .g 179 to 589 411 to 1       411/411
(100 %)
1 diff
(99.8 %id)
CD621658   .g 179 to 589 1 to 411   tiling clone,   411/412
(99 %)
2 diff
(99.6 %id)
DB086517 testis .h 1 to 573 2 to 572   tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
DB071923 testis .i 1 to 551 2 to 552 exact tiling clone, capped   551/551
(100 %)
0 diff
(100 %id)
DA105946 cerebellum .j-u 1 to 535 2 to 538 A40C R41E L42V T43N M44N ... tiling clone, capped   537/539
(99 %)
3 diff
(99.5 %id)
AF042792   Gene CACNA2D2, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
AI904178 breast Gene CACNA2D2, variant not shown              
DA969749 stomach Gene CACNA2D2, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB334576 stomach Gene CACNA2D2, variant not shown         Suspected internal deletion, this clone was ignored    
CA941357 Pancreas, Purified pancreatic islet Gene CACNA2D2, variant not shown       fully sequenced, AAA Suspected internal deletion, this clone was ignored    
CA941644 Pancreas, Purified pancreatic islet Gene CACNA2D2, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
DB083435 testis Gene CACNA2D2, variant not shown       capped      
DB340972 testis Gene CACNA2D2, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C