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Gene CACNA1ITABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
42 supporting clones for gene CACNA1I back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF142567   .a 1 to 6990 1 to 6990 exact tiling clone, 6990/6990
(100 %)
1 diff
(100.0 %id)
NM_021096.3   .a 1 to 10007 1 to 10007 exact RefSeq, 10007/10007
(100 %)
5 diff
(100.0 %id)
H55223   .a 255 to 348 1 to 94     94/94
(100 %)
0 diff
(100 %id)
H55605   .a 255 to 348 1 to 94     94/94
(100 %)
0 diff
(100 %id)
H55617   .a 483 to 580 1 to 98     98/98
(100 %)
0 diff
(100 %id)
AB032946 brain .a 3598 to 9997 2 to 6405   tiling clone, available from KIAA, 6404/6405
(99 %)
3 diff
(100.0 %id)
DA183658 amygdala .a 6947 to 7407 2 to 464   capped 463/463
(100 %)
2 diff
(99.6 %id)
DA787070 brain .a 6969 to 7341 2 to 375   capped 374/381
(98 %)
3 diff
(99.3 %id)
DA517716 brain .a 7220 to 7709 2 to 491   capped 490/490
(100 %)
0 diff
(100 %id)
DA388337 thalamus .a 7312 to 7905 2 to 594   capped 593/593
(100 %)
2 diff
(99.7 %id)
BX488084   .a 7398 to 7892 1 to 494     494/494
(100 %)
5 diff
(99.0 %id)
TI_45212421   .a 7549 to 8293 85 to 825     741/825
(89 %)
6 diff
(99.3 %id)
TI_44342721   .a 7549 to 8388 119 to 958     840/967
(86 %)
6 diff
(99.4 %id)
BG707996 brain, hypothalamus .a 7551 to 8280 1 to 724     724/866
(83 %)
29 diff
(96.7 %id)
BC042972 Brain, hypothalamus .a 7551 to 10000 1 to 2449   available from MGC, AAA 2449/2449
(100 %)
9 diff
(99.7 %id)
BI597525 brain, hypothalamus .a 7551 to 8293 1 to 739   available from MGC, 739/739
(100 %)
16 diff
(97.9 %id)
BI666530 brain, hypothalamus .a 7551 to 8388 1 to 838     838/847
(98 %)
6 diff
(99.3 %id)
DA516481 brain .a 7768 to 8253 2 to 487   capped 486/486
(100 %)
0 diff
(100 %id)
BI758428 brain .a 7822 to 8707 30 to 932     903/936
(96 %)
47 diff
(95.0 %id)
TI_57218515   .a 7822 to 8707 30 to 932     903/936
(96 %)
47 diff
(95.0 %id)
F13540 brain, total brain .a 8079 to 8373 1 to 295     295/295
(100 %)
0 diff
(100 %id)
BQ637689 eye, retina .a 8109 to 8738 1 to 630     630/630
(100 %)
0 diff
(100 %id)
T65485 whole brain .a 8194 to 8480 1 to 294     294/305
(96 %)
11 diff
(96.4 %id)
BX951618   .a 8195 to 8788 1 to 595     595/595
(100 %)
1 diff
(99.9 %id)
CT001055 T-Lymphocytes .a 8388 to 9051 1 to 664     664/668
(99 %)
1 diff
(99.9 %id)
BF948573 nervous_normal .a 8735 to 9278 565 to 7     559/565
(98 %)
0 diff
(100 %id)
CF456670 peripheral nervous system .a 8782 to 9303 1 to 521     521/813
(64 %)
11 diff
(98.7 %id)
N57586 multiple sclerosis lesions .a 9041 to 9444 1 to 406     406/406
(100 %)
2 diff
(99.6 %id)
BY996679   .a 9177 to 9863 10 to 696     687/696
(98 %)
6 diff
(99.2 %id)
BI002572 head_normal .a 9206 to 9307 100 to 1     100/100
(100 %)
2 diff
(98.0 %id)
BM695724 eye, optic nerve .a 9372 to 9726 1 to 355   fully sequenced, 355/355
(100 %)
1 diff
(99.8 %id)
T65410 whole brain .a 9505 to 9950 448 to 1     448/451
(99 %)
16 diff
(96.5 %id)
BX101763 whole brain .a 9530 to 9997 482 to 15   AAA 468/468
(100 %)
0 diff
(100 %id)
BF940871 brain, oligodendroglioma .a 9535 to 9999 467 to 1     467/467
(100 %)
3 diff
(99.4 %id)
N52765 multiple sclerosis lesions .a 9559 to 10002 449 to 6     444/450
(98 %)
0 diff
(100 %id)
AJ573520 pectoral muscle (after mastectomy) .a 9566 to 9973 1 to 408     408/408
(100 %)
1 diff
(99.8 %id)
BM688784 eye, optic nerve .a 9665 to 9983 9 to 327     319/327
(97 %)
6 diff
(98.2 %id)
F11119 brain, total brain .a 9689 to 9997 308 to 1     308/308
(100 %)
1 diff
(99.7 %id)
BM665096 eye, optic nerve .a 9696 to 10004 328 to 19   tiling clone, fully sequenced, AAA 310/310
(100 %)
1 diff
(99.7 %id)
AF393329   .b 1 to 9892 1 to 9896 I1005V tiling clone, 9896/9896
(100 %)
7 diff
(100.0 %id)
NM_001003406.1   .b 1 to 9902 1 to 9902 exact RefSeq, 9902/9902
(100 %)
5 diff
(100.0 %id)
AF129133 brain .c 1 to 6740 1 to 6740 exact tiling clone, 6740/6740
(100 %)
1 diff
(100.0 %id)
AF211189   .d 1 to 5952 1 to 5952 exact tiling clone, 5952/5952
(100 %)
0 diff
(100 %id)
BE164503 head_neck .e 1 to 423 1 to 422 S59T P60T tiling clone, 422/425
(99 %)
7 diff
(98.4 %id)
H55225   .f 1 to 168 1 to 168 A36C P37T A54R A55R tiling clone, 168/168
(100 %)
6 diff
(96.5 %id)
BF879321 lung_tumor .g-u 1 to 146 1 to 146 exact tiling clone, 146/146
(100 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C