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Gene CACNA1ETABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
113 supporting clones for gene CACNA1E back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BE222969 brain, oligodendroglioma .a 1 to 498 498 to 1   tiling clone,   498/498
(100 %)
0 diff
(100 %id)
AF387615   .a 285 to 422 1 to 138       138/138
(100 %)
0 diff
(100 %id)
L27745   .a 424 to 7490 1 to 7064   tiling clone,   7064/7110
(99 %)
7 diff
(100.0 %id)
L29385 Brain, hippocampus .b 1 to 7089 1 to 7089 R2034P G2041R C2163W S2176R G2202V tiling clone,   7089/7089
(100 %)
10 diff
(99.9 %id)
NM_000721.2   .b 1 to 9721 1 to 9721 exact RefSeq, AAA   9721/9721
(100 %)
0 diff
(100 %id)
CD609475   .b 277 to 985 720 to 11       710/720
(98 %)
3 diff
(99.6 %id)
CD609474   .b 280 to 864 1 to 585       585/585
(100 %)
0 diff
(100 %id)
T28790 brain .b 295 to 667 1 to 380     Submitted on the opposite strand 380/384
(98 %)
9 diff
(97.7 %id)
A22936   .b 411 to 2585 1 to 2175   tiling clone,   2175/2175
(100 %)
6 diff
(99.8 %id)
DA490041 brain .b 1052 to 1613 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AB209499 brain .b 1369 to 13068 1 to 11702   tiling clone,   11702/11702
(100 %)
7 diff
(100.0 %id)
BP230632 brain .b 1981 to 2557 1 to 578       578/582
(99 %)
3 diff
(99.5 %id)
DA325464 hippocampus .b 2063 to 2700 2 to 646   capped   645/645
(100 %)
9 diff
(98.7 %id)
BP310090 brain .b 2770 to 3063 1 to 294       294/582
(50 %)
1 diff
(99.9 %id)
CN261474 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2876 to 3404 1 to 529       529/529
(100 %)
3 diff
(99.5 %id)
DA796409 brain .b 3729 to 4201 2 to 474   capped   473/473
(100 %)
1 diff
(99.8 %id)
DA159669 amygdala .b 3892 to 4455 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BE935840 nervous_normal .b 4270 to 4676 1 to 407       407/420
(96 %)
2 diff
(99.6 %id)
DA799670 brain .b 6311 to 6869 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
CD580303 brain .b 6350 to 7123 1 to 777       777/777
(100 %)
5 diff
(99.4 %id)
DA502762 brain .b 6479 to 7032 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
BI914369 brain .b 6755 to 7531 1 to 776       776/776
(100 %)
5 diff
(99.4 %id)
TI_57242975   .b 6755 to 7531 74 to 849       776/849
(91 %)
7 diff
(99.2 %id)
DA773499 brain .b 6788 to 7274 2 to 489   capped   488/488
(100 %)
2 diff
(99.6 %id)
DR002711 fetal brain .b 6928 to 7570 1 to 643       643/643
(100 %)
10 diff
(98.5 %id)
DA778041 brain .b 7033 to 7373 2 to 345   capped   344/344
(100 %)
2 diff
(99.5 %id)
DN991303 brain, whole brain .b 7073 to 7646 5 to 578       574/578
(99 %)
6 diff
(99.0 %id)
AA349993 brain .b 7109 to 7517 1 to 410       410/410
(100 %)
3 diff
(99.3 %id)
R11722 whole brain .b 7110 to 7595 1 to 495       495/498
(99 %)
14 diff
(97.2 %id)
DA788673 brain .b 7161 to 7721 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
AK096563 brain .b 7191 to 9727 1 to 2539   available from FLJ,   2539/2539
(100 %)
4 diff
(99.9 %id)
DA774605 brain .b 7192 to 7762 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BQ067912 brain .b 7390 to 8290 20 to 929       910/1078
(84 %)
40 diff
(96.3 %id)
DA301749 hippocampus .b 7468 to 7965 2 to 499   capped   498/500
(99 %)
5 diff
(99.0 %id)
DA509484 brain .b 7484 to 7931 2 to 449   capped   448/448
(100 %)
2 diff
(99.6 %id)
DA297581 hippocampus .b 7608 to 8179 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
DA172496 amygdala .b 7736 to 8309 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
BM927219 brain .b 8073 to 9038 1 to 976       976/1047
(93 %)
21 diff
(98.0 %id)
Z43665 brain, total brain .b 8236 to 8596 1 to 361       361/361
(100 %)
0 diff
(100 %id)
R56643.
matches multiple genes
whole brain .b 8335 to 8830 500 to 1     Submitted on the opposite strand, also hits gene ZNF174andNAT15andCLUAP1 500/503
(99 %)
12 diff
(97.7 %id)
F12971 brain, total brain .b 8555 to 8914 1 to 360       360/360
(100 %)
1 diff
(99.8 %id)
T75282 whole brain .b 8555 to 9007 1 to 463       463/518
(89 %)
17 diff
(96.8 %id)
R52840 whole brain .b 8556 to 9062 1 to 516       516/516
(100 %)
13 diff
(97.5 %id)
AA683288 schizophrenic brain S-11 frontal lobe .b 8557 to 9003 447 to 1       447/447
(100 %)
2 diff
(99.6 %id)
BE504178 carcinoid, lung .b 8627 to 9103 26 to 502     Submitted on the opposite strand 477/502
(95 %)
6 diff
(98.9 %id)
AI564014 anaplastic oligodendroglioma, brain .b 8880 to 9365 1 to 486     Submitted on the opposite strand 486/486
(100 %)
0 diff
(100 %id)
DA325255 hippocampus .b 8881 to 9423 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BF364673 nervous_normal .b 8950 to 9200 252 to 3       250/256
(97 %)
0 diff
(100 %id)
AI000342 Kidney .b 9092 to 9486 1 to 399     Submitted on the opposite strand 399/399
(100 %)
7 diff
(98.3 %id)
DB302631 amygdala .b 9154 to 9721 569 to 1       569/569
(100 %)
1 diff
(99.9 %id)
DB325918 brain .b 9170 to 9727 559 to 1       559/559
(100 %)
1 diff
(99.9 %id)
AW452628   .b 9198 to 9721 539 to 16   AAA   524/538
(97 %)
0 diff
(100 %id)
BX110050 whole brain .b 9207 to 9718 526 to 15   AAA   512/512
(100 %)
2 diff
(99.7 %id)
AI933655 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 9295 to 9581 300 to 13   AAA   288/288
(100 %)
7 diff
(97.6 %id)
AW451100   .b 9316 to 9733 1 to 418     Submitted on the opposite strand 418/431
(96 %)
8 diff
(98.2 %id)
R52811 whole brain .b 9360 to 9724 366 to 1       366/366
(100 %)
5 diff
(98.7 %id)
AA349992 brain .b 9392 to 9561 170 to 1       170/170
(100 %)
1 diff
(99.5 %id)
AA704377 pineal gland .b 9433 to 9721 289 to 1       289/289
(100 %)
1 diff
(99.7 %id)
R66414 whole brain .b 9453 to 9719 287 to 19   AAA   269/269
(100 %)
2 diff
(99.3 %id)
F10569 brain, total brain .b 9463 to 9719 257 to 1       257/257
(100 %)
0 diff
(100 %id)
Z39724 brain, total brain .b 9466 to 9727 262 to 1       262/262
(100 %)
1 diff
(99.7 %id)
R38659 whole brain .b 9490 to 9719 250 to 19   AAA   232/237
(97 %)
0 diff
(100 %id)
DA336175 hippocampus .b 10341 to 10826 2 to 487   capped   486/486
(100 %)
3 diff
(99.4 %id)
DA270776 caudate nucleus .b 11072 to 11625 2 to 555   tiling clone, capped   554/554
(100 %)
1 diff
(99.9 %id)
D59380 brain .b 11267 to 11700 1 to 433       433/433
(100 %)
4 diff
(99.1 %id)
DA506666 brain .b 11872 to 12437 10 to 576   capped   567/575
(98 %)
6 diff
(99.0 %id)
DA531210 brain .b 12092 to 12693 2 to 603   capped   602/602
(100 %)
2 diff
(99.7 %id)
AI268276 carcinoid, lung .b 12239 to 12683 1 to 445     Submitted on the opposite strand 445/445
(100 %)
0 diff
(100 %id)
AI912770 carcinoid, lung .b 12239 to 12723 1 to 485     Submitted on the opposite strand 485/485
(100 %)
0 diff
(100 %id)
AI698138 carcinoid, lung .b 12239 to 12709 1 to 471     Submitted on the opposite strand 471/471
(100 %)
0 diff
(100 %id)
DA524213 brain .b 12301 to 12868 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA790882 brain .b 12301 to 12831 2 to 531   capped   530/530
(100 %)
3 diff
(99.5 %id)
AI692335 carcinoid, lung .b 12417 to 12963 1 to 545     Submitted on the opposite strand 545/545
(100 %)
1 diff
(99.9 %id)
AA916749 carcinoid, lung .b 12419 to 12973 1 to 555     Submitted on the opposite strand 555/555
(100 %)
0 diff
(100 %id)
BF445076 carcinoid, lung .b 12421 to 12955 1 to 535     Submitted on the opposite strand 535/537
(99 %)
1 diff
(99.9 %id)
DA257894 caudate nucleus .b 12433 to 12986 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DB307001 caudate nucleus .b 12536 to 13064 532 to 1   tiling clone,   532/532
(100 %)
3 diff
(99.5 %id)
BE468166 carcinoid, lung .b 12588 to 13067 480 to 1       480/480
(100 %)
1 diff
(99.8 %id)
BF223638 carcinoid, lung .b 12622 to 13071 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
AA931556 carcinoid, lung .b 12641 to 13071 431 to 1       431/431
(100 %)
1 diff
(99.8 %id)
DA131668 alzheimer cortex .b 12655 to 13031 2 to 378   capped   377/377
(100 %)
0 diff
(100 %id)
DA506164 brain .b 12657 to 13223 2 to 566   capped   565/565
(100 %)
3 diff
(99.5 %id)
AI702713 carcinoid, lung .b 12659 to 13071 413 to 1       413/413
(100 %)
5 diff
(98.8 %id)
D80086 brain .b 12777 to 13064 288 to 1       288/288
(100 %)
6 diff
(98.0 %id)
DA257885 caudate nucleus .b 12926 to 13482 2 to 558   tiling clone, capped   557/557
(100 %)
3 diff
(99.5 %id)
R15004 whole brain .b 12965 to 13257 1 to 301     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 301/301
(100 %)
8 diff
(97.4 %id)
BF445172 carcinoid, lung .b 13057 to 13495 1 to 439   tiling clone, Submitted on the opposite strand 439/439
(100 %)
3 diff
(99.4 %id)
DA157131 amygdala .b 13252 to 13821 2 to 571   tiling clone, capped   570/570
(100 %)
3 diff
(99.5 %id)
AA774930 schizophrenic brain S-11 frontal lobe .b 14289 to 14430 1 to 141   tiling clone, Submitted on the opposite strand 141/141
(100 %)
2 diff
(98.6 %id)
AW905038 nervous_normal .b 14299 to 14783 493 to 9       485/521
(93 %)
0 diff
(100 %id)
D61062   .b 14383 to 14725 1 to 340       340/340
(100 %)
6 diff
(98.3 %id)
DB309887 hippocampus .b 14385 to 14926 542 to 1   tiling clone,   542/542
(100 %)
1 diff
(99.9 %id)
BE702176 nervous_normal .b 14446 to 14839 399 to 6       394/399
(98 %)
0 diff
(100 %id)
R45692 whole brain .b 14453 to 14926 503 to 13   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 491/537
(91 %)
28 diff
(94.8 %id)
BX096029 whole brain .b 14472 to 14926 469 to 15   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 455/455
(100 %)
0 diff
(100 %id)
AI681841 carcinoid, lung .b 14545 to 14903 1 to 359     Submitted on the opposite strand 359/359
(100 %)
0 diff
(100 %id)
DB317371 brain .b 14611 to 14848 239 to 1       239/239
(100 %)
1 diff
(99.6 %id)
T23719   .b 14618 to 14925 308 to 1       308/309
(99 %)
3 diff
(99.1 %id)
BF433423 carcinoid, lung .b 14700 to 14928 231 to 3   tiling clone,   229/250
(91 %)
0 diff
(100 %id)
L29384 Brain, hippocampus .c 1 to 7032 1 to 7032 R2015P G2022R C2144W S2157R G2183V tiling clone,   7032/7032
(100 %)
10 diff
(99.9 %id)
A22424   .d 1 to 4873 1 to 4874 Q12H Q13E E18D L19V I54M ... tiling clone,   4874/4919
(99 %)
27 diff
(99.5 %id)
AW138217   .d 4090 to 4501 8 to 419   tiling clone, Submitted on the opposite strand 412/419
(98 %)
6 diff
(98.6 %id)
AW136398   .d 4090 to 4439 8 to 357     Submitted on the opposite strand 350/357
(98 %)
6 diff
(98.4 %id)
AW205814   .d 4090 to 4435 8 to 353     Submitted on the opposite strand 346/353
(98 %)
6 diff
(98.4 %id)
TI_153989744   .d 4090 to 4627 79 to 617     Submitted on the opposite strand 539/617
(87 %)
6 diff
(99.1 %id)
AW613536 carcinoid, lung .d 4100 to 4396 1 to 297     Submitted on the opposite strand 297/297
(100 %)
2 diff
(99.4 %id)
AI885679 anaplastic oligodendroglioma, brain .d 4409 to 4735 329 to 3       327/329
(99 %)
0 diff
(100 %id)
BF446546 carcinoid, lung .d 4409 to 4740 336 to 5       332/336
(98 %)
0 diff
(100 %id)
AA908801 carcinoid, lung .d 4546 to 4891 477 to 132   tiling clone, AAA   346/453
(76 %)
0 diff
(100 %id)
AK309070 hippocampus .e 1 to 2141 2 to 2140 L211S tiling clone,   2140/2140
(100 %)
2 diff
(100.0 %id)
DA332110 hippocampus .e 1 to 595 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
AW028641 fibrotheoma, ovary .e 177 to 508 334 to 1   tiling clone,   334/334
(100 %)
1 diff
(99.8 %id)
BF732181 fibrotheoma, ovary .e 205 to 508 304 to 1       304/304
(100 %)
0 diff
(100 %id)
BP230397 brain .e 236 to 816 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
BG713893 brain, hypothalamus .f-u 1 to 781 1 to 790   tiling clone, available from MGC,   790/795
(99 %)
19 diff
(97.7 %id)
BC037800 Brain, hypothalamus .f-u 5 to 1346 5 to 1346 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1342/1342
(100 %)
2 diff
(99.9 %id)
TI_57243227   .f-u 22 to 672 67 to 716       650/716
(90 %)
6 diff
(99.2 %id)
BI918098 brain .f-u 27 to 672 1 to 645       645/645
(100 %)
3 diff
(99.6 %id)
AL134292 brain .g-u 1 to 549 1 to 549 exact tiling clone,   549/549
(100 %)
1 diff
(99.9 %id)
BQ351021 head_neck Gene CACNA1E, variant not shown         This clone was ignored    
DB305870 brain Gene CACNA1E, variant not shown              
DA239810 brain Gene CACNA1E, variant not shown       capped      
BX643306   Gene CACNA1E, variant not shown         Suspected internal deletion, this clone was ignored    
BP423542 small intestine Gene CACNA1E, variant not shown         Submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI