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Gene CACNA1BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
82 supporting clones for gene CACNA1B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
M94172 CNS .a 1 to 7345 1 to 7351 N1605E N1606T F1607N I1608N N1609F ... tiling clone,   7351/7364
(99 %)
11 diff
(99.9 %id)
NM_000718.2   .a 1 to 9784 1 to 9790 N1605E N1606T F1607N I1608N N1609F ... RefSeq,   9790/9790
(100 %)
2 diff
(100.0 %id)
BQ882047 dorsal root ganglia .a 429 to 1046 56 to 677       622/958
(64 %)
29 diff
(97.0 %id)
A22950   .a 979 to 2078 1 to 1100       1100/1100
(100 %)
0 diff
(100 %id)
DA234258 brain .a 3074 to 3657 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB097527 testis .a 3248 to 3837 2 to 592   capped   591/591
(100 %)
2 diff
(99.7 %id)
DA920671 small intestine .a 3376 to 3935 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB076398 testis .a 3807 to 4378 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BP230519 brain .a 4029 to 4611 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
A22926   .a 4105 to 9546 1 to 5438   tiling clone,   5438/5438
(100 %)
17 diff
(99.7 %id)
DA194046 amygdala .a 4282 to 4859 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
DA768239 brain .a 4621 to 5148 2 to 529   tiling clone, capped   528/528
(100 %)
0 diff
(100 %id)
A22932   .a 4663 to 5659 1 to 997       997/997
(100 %)
5 diff
(99.5 %id)
BF092960 testis_normal .a 4663 to 4915 81 to 333       253/333
(75 %)
6 diff
(98.2 %id)
DA096832 cerebellum .a 4708 to 5204 2 to 504   capped   503/503
(100 %)
4 diff
(99.3 %id)
DA243072 brain .a 4739 to 5322 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
AA776162 schizophrenic brain S-11 frontal lobe .a 4868 to 5306 1 to 438     Submitted on the opposite strand 438/438
(100 %)
4 diff
(99.1 %id)
DB023273 testis .a 5010 to 5554 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
T12610   .a 5089 to 5233 1 to 145       145/145
(100 %)
0 diff
(100 %id)
DA526357 brain .a 5230 to 5785 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
BE266069 lung, small cell carcinoma .a 5284 to 5913 1 to 631       631/696
(90 %)
9 diff
(98.8 %id)
DA194551 amygdala .a 5510 to 6110 2 to 603   capped   602/602
(100 %)
3 diff
(99.6 %id)
DA698142   .a 5666 to 6228 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DA098865 cerebellum .a 5705 to 6254 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
BG472603 eye, retinoblastoma .a 5837 to 6572 1 to 735       735/735
(100 %)
9 diff
(98.8 %id)
DA103959 cerebellum .a 5874 to 6424 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA238136 brain .a 6191 to 6780 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA191062 amygdala .a 6243 to 6771 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
DA789385 brain .a 6664 to 7177 2 to 515   capped   514/514
(100 %)
2 diff
(99.7 %id)
BP387438 pancreatic islet .a 6937 to 7345 1 to 409     Submitted on the opposite strand 409/412
(99 %)
3 diff
(99.3 %id)
DA157630 amygdala .a 7329 to 7888 2 to 561   tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
DR033756 brain, Right frontal lobe .a 7391 to 8007 12 to 628   tiling clone,   617/628
(98 %)
6 diff
(99.1 %id)
BQ233723 brain .a 7822 to 8639 1 to 825   tiling clone,   825/905
(91 %)
36 diff
(96.1 %id)
BE252230 eye, retinoblastoma .a 7973 to 8606 1 to 633       633/633
(100 %)
2 diff
(99.7 %id)
BG714937 brain, hypothalamus .a 8227 to 8771 1 to 545       545/557
(97 %)
16 diff
(97.2 %id)
BI667554.
matches multiple genes
brain, Brain, hypothalamus, hypothalamus .a 8227 to 9037 1 to 813   available from MGC, also hits gene C21orf131 813/856
(94 %)
33 diff
(96.2 %id)
BI667391 brain, hypothalamus .a 8227 to 8897 1 to 670       670/670
(100 %)
14 diff
(98.0 %id)
TI_44343349   .a 8233 to 8897 89 to 752       664/752
(88 %)
6 diff
(99.3 %id)
TI_44343513   .a 8233 to 9037 127 to 933       807/976
(82 %)
29 diff
(97.1 %id)
BX419165 brain, fetal brain .a 8305 to 9109 1 to 802   tiling clone,   802/802
(100 %)
56 diff
(93.1 %id)
BI549597 brain, hippocampus .a 8350 to 9185 1 to 838   available from MGC,   838/846
(99 %)
22 diff
(97.4 %id)
BC033060 Brain, hippocampus .a 8354 to 9774 5 to 1422   tiling clone, available from MGC, AAA   1418/1427
(99 %)
3 diff
(99.8 %id)
TI_44170803   .a 8354 to 9185 96 to 929       834/937
(89 %)
20 diff
(97.9 %id)
DB472016 hippocampus .a 8355 to 8849 1 to 493       493/493
(100 %)
2 diff
(99.6 %id)
AW953319   .a 8389 to 8762 3 to 374   tiling clone,   372/393
(94 %)
6 diff
(98.5 %id)
AA351022 brain .a 8396 to 8740 1 to 346       346/346
(100 %)
3 diff
(99.2 %id)
DA141704 alzheimer cortex .a 8520 to 9076 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
H16945 whole brain .a 8590 to 9088 1 to 506       506/506
(100 %)
15 diff
(97.1 %id)
R55936 whole brain .a 8652 to 9116 1 to 475       475/481
(98 %)
30 diff
(93.8 %id)
CD513312 brain, Pituitary .a 8863 to 9651 29 to 826       798/911
(87 %)
14 diff
(98.5 %id)
CK005412 brain/CNS, Human Brain - Frontal Cortex .a 8966 to 9583 1 to 617       617/621
(99 %)
3 diff
(99.6 %id)
BF110379 carcinoid, lung .a 8990 to 9586 597 to 1       597/597
(100 %)
3 diff
(99.5 %id)
BX091082 whole brain .a 9051 to 9597 547 to 1       547/547
(100 %)
0 diff
(100 %id)
AW015170   .a 9051 to 9583 550 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 533/533
(100 %)
0 diff
(100 %id)
AI912671 carcinoid, lung .a 9078 to 9582 505 to 1       505/505
(100 %)
1 diff
(99.9 %id)
AI458511 carcinoid, lung .a 9187 to 9582 396 to 1       396/396
(100 %)
0 diff
(100 %id)
AA351021 brain .a 9208 to 9583 381 to 1       381/385
(98 %)
7 diff
(98.2 %id)
DB301991 amygdala .a 9229 to 9775 547 to 1       547/547
(100 %)
2 diff
(99.7 %id)
BF941918 sciatic nerve .a 9232 to 9587 356 to 1       356/356
(100 %)
0 diff
(100 %id)
R55937 whole brain .a 9253 to 9566 319 to 1       319/319
(100 %)
20 diff
(93.8 %id)
H16946 whole brain .a 9271 to 9592 324 to 1       324/331
(97 %)
3 diff
(99.1 %id)
DB540769 hippocampus .a 9303 to 9774 1 to 471     Submitted on the opposite strand 471/480
(98 %)
1 diff
(99.8 %id)
AA448208.
matches multiple genes
  .a 9363 to 9778 416 to 1   tiling clone, also hits gene KCTD7andRABGEF1 416/416
(100 %)
0 diff
(100 %id)
D80875 brain .a 9461 to 9773 1 to 312       312/313
(99 %)
2 diff
(99.4 %id)
M94173 CNS .b 1 to 6628 1 to 6634 N1605E N1606T F1607N I1608N N1609F ... tiling clone,   7164/7177
(99 %)
11 diff
(99.9 %id)
A22938   .c 163 to 6197 184 to 6232   tiling clone,   6204/6232
(99 %)
30 diff
(99.6 %id)
AB209467 brain .d 1 to 6731 1 to 5647 exact tiling clone, Suspected internal deletion 5647/5647
(100 %)
2 diff
(100.0 %id)
CK000994 mixed .e 1 to 759 1 to 755 D235Y E242K K243R S246P L247V ... tiling clone,   755/802
(94 %)
8 diff
(99.1 %id)
CN261465 embryonic stem cells, cell lines H1, H7, andH9 .f 1 to 663 1 to 663 exact tiling clone,   663/663
(100 %)
1 diff
(99.9 %id)
DB019146 esophageal, tumor tissue .g 1 to 565 2 to 566 exact tiling clone, capped   565/565
(100 %)
2 diff
(99.7 %id)
DB064678 testis .h 1 to 511 26 to 537 S32V S33Q T34H E36R R37K ... tiling clone, capped   515/530
(97 %)
6 diff
(98.9 %id)
DA269188 caudate nucleus .i 1 to 546 2 to 547 S120T A152D S153Y tiling clone, capped   546/546
(100 %)
4 diff
(99.3 %id)
DB071339 testis .j 1 to 544 2 to 545 exact tiling clone, capped   544/544
(100 %)
0 diff
(100 %id)
T12609   .j 118 to 243 1 to 126       126/126
(100 %)
0 diff
(100 %id)
AY429522   .k 1 to 448 1 to 448 exact tiling clone,   448/457
(98 %)
0 diff
(100 %id)
DA213854 brain .l 1 to 539 2 to 540 A9S Q94X tiling clone, capped   539/539
(100 %)
3 diff
(99.5 %id)
DB088137 testis .m 1 to 556 2 to 557 exact tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
AY429523   .n 1 to 576 1 to 576 exact tiling clone,   576/585
(98 %)
0 diff
(100 %id)
BX509846   .o-u 1 to 456 1 to 458 G4X tiling clone,   458/458
(100 %)
3 diff
(99.4 %id)
DA243842 brain .p 1 to 586 12 to 597 exact capped   586/586
(100 %)
0 diff
(100 %id)
DA243871 brain .p 1 to 584 12 to 595 exact tiling clone, capped   584/584
(100 %)
0 diff
(100 %id)
BQ337878 nervous_normal .q-u 1 to 266 531 to 255 A6P G52W H53A C54L A55C ... tiling clone,   272/281
(96 %)
0 diff
(100 %id)
DB359778 whole embryo, mainly body Gene CACNA1B, variant not shown         This clone was ignored    
AU120920 whole embryo, mainly body Gene CACNA1B, variant not shown       capped This clone was ignored    
BF436729 fibrotheoma, ovary Gene CACNA1B, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV751195 Pituitary Gene CACNA1B, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o-u, .p, .q-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI