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Gene CABP4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
39 supporting clones for gene CABP4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AY039217 retina .a 1 to 1299 1 to 1299 exact tiling clone,   1299/1299
(100 %)
0 diff
(100 %id)
NM_145200.3   .a 1 to 4018 1 to 4018 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 4018/4018
(100 %)
0 diff
(100 %id)
BM690981 eye, RPE and Choroid .a 48 to 642 7 to 601       595/601
(99 %)
6 diff
(99.1 %id)
BU726309 eye, RPE and Choroid .a 1111 to 1473 362 to 1   tiling clone,   362/362
(100 %)
4 diff
(98.9 %id)
EL949781 eyeball .a 3270 to 3911 1 to 642   tiling clone,   642/642
(100 %)
5 diff
(99.3 %id)
BF929601 nervous_tumor .a 3467 to 3719 1 to 253       253/431
(58 %)
2 diff
(99.6 %id)
BM692307 eye, human retina .a 3467 to 3997 28 to 558   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 531/558
(95 %)
6 diff
(99.0 %id)
BM692721 eye, Retina Foveal and Macular .a 3575 to 4018 1 to 444   tiling clone, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 444/444
(100 %)
0 diff
(100 %id)
BM702535 eye, human retina .a 3602 to 3998 1 to 397       397/430
(92 %)
1 diff
(99.8 %id)
BM692536 eye, human retina .a 3647 to 3997 1 to 351   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 351/351
(100 %)
0 diff
(100 %id)
TI_151705725   .a 3747 to 4002 332 to 76       257/356
(72 %)
0 diff
(100 %id)
TI_149278473   .a 3956 to 4589 60 to 690   tiling clone, Submitted on the opposite strand 631/761
(82 %)
11 diff
(98.6 %id)
BM969329 lung, Primary Lung Epithelial Cells .a 3956 to 4566 16 to 623   tiling clone, Submitted on the opposite strand 608/623
(97 %)
7 diff
(98.9 %id)
BX283598 large cell carcinoma, lung .b 1 to 397 1 to 397       397/397
(100 %)
1 diff
(99.8 %id)
BG330956 large cell carcinoma, lung .b 1 to 648 1 to 648   tiling clone,   648/648
(100 %)
1 diff
(99.9 %id)
BC033167 Lung, large cell carcinoma .b 2 to 1381 1 to 1380 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 1380/1380
(100 %)
0 diff
(100 %id)
EL955158 eyeball .b 579 to 956 1 to 380       380/380
(100 %)
9 diff
(97.7 %id)
BX954839   .c-u 1 to 605 1 to 605 exact tiling clone,   605/605
(100 %)
1 diff
(99.9 %id)
BX115851 liver and spleen .d-u -11 to 725 1 to 737   tiling clone,   737/737
(100 %)
0 diff
(100 %id)
H70963 liver and spleen .d-u -10 to 336 1 to 346       346/346
(100 %)
7 diff
(98.0 %id)
DW410206 Liver .d-u 339 to 657 17 to 335       319/335
(95 %)
7 diff
(98.0 %id)
AI129455 uterus .d-u 388 to 844 473 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 457/457
(100 %)
2 diff
(99.6 %id)
H69788 liver and spleen .d-u 430 to 809 395 to 6       390/398
(97 %)
0 diff
(100 %id)
DW446822 Liver .d-u 629 to 812 17 to 201   tiling clone, AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 185/201
(92 %)
6 diff
(97.1 %id)
BE070394 breast .d-u 1156 to 1334 179 to 1   tiling clone, Submitted on the opposite strand 179/179
(100 %)
1 diff
(99.5 %id)
BM688179 eye, human retina .d-u 1505 to 1942 1 to 439   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 439/439
(100 %)
2 diff
(99.6 %id)
AI271217 breast, normal epithelium .d-u 1719 to 1935 1 to 216   AAA Submitted on the opposite strand 216/216
(100 %)
6 diff
(97.3 %id)
AI225179 breast, normal epithelium .d-u 1719 to 1935 1 to 216   AAA Submitted on the opposite strand 216/216
(100 %)
6 diff
(97.3 %id)
BU726935 eye, human retina .d-u 1867 to 1942 94 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 76/76
(100 %)
0 diff
(100 %id)
BI766814 pooled lung and spleen .e 1 to 778 1 to 780 A77C P78T A80C S81I G83W ... tiling clone,   780/780
(100 %)
2 diff
(99.8 %id)
TI_57180712   .e 1 to 778 89 to 868 A77C P78T A80C S81I G83W ...     780/868
(89 %)
7 diff
(99.2 %id)
DA978105 synovial membrane tissue from rheumatioidarthritis .f 1 to 561 2 to 562   tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
DB334861 synovial membrane tissue from rheumatioidarthritis .f 1158 to 1676 519 to 1   tiling clone,   519/519
(100 %)
2 diff
(99.7 %id)
BX510148   .g 1 to 491 1 to 491   tiling clone,   491/491
(100 %)
1 diff
(99.8 %id)
AL712439 human skeletal muscle .g 90 to 683 1 to 594 exact tiling clone,   594/594
(100 %)
6 diff
(99.0 %id)
CR615565 fetal liver .h-u 1 to 1187 1 to 1187 exact tiling clone,   1187/1187
(100 %)
0 diff
(100 %id)
BX422498 fetal liver, Liver .h-u 1 to 833 1 to 833 S49V G50A T51P Q52R V53S ... fully sequenced,   833/833
(100 %)
8 diff
(99.1 %id)
BX422497 fetal liver, Liver .h-u 803 to 1151 396 to 38   fully sequenced,   359/396
(90 %)
6 diff
(98.5 %id)
AK311199 brain .i 1 to 783 2 to 785 exact tiling clone,   785/785
(100 %)
8 diff
(99.0 %id)
DA239996 brain .i 1 to 596 2 to 598 exact capped   597/597
(100 %)
7 diff
(98.9 %id)
BQ882349 Spleen .i 16 to 913 1 to 916 exact tiling clone,   916/918
(99 %)
39 diff
(95.8 %id)
AI569060 adenocarcinoma, Pancreas .j 1 to 354 354 to 1 exact tiling clone,   354/354
(100 %)
0 diff
(100 %id)
AI659884 Prostate Gene CABP4, variant not shown         Submitted on the opposite strand    
BQ668814 epidermoid carcinoma, cell line, salivary gland Gene CABP4, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d-u, .e, .f, .g, .h-u, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI