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Gene C9orf98TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
90 supporting clones for gene C9orf98 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC050576 Brain, adult medulla .a 1 to 2106 1 to 2106 exact tiling clone, available from MGC, AAA   2106/2106
(100 %)
0 diff
(100 %id)
BM559952 brain, medulla .a 1 to 638 1 to 641       641/1482
(43 %)
13 diff
(99.2 %id)
NM_152572.2   .a 1 to 2106 1 to 2106 exact RefSeq, AAA   2106/2106
(100 %)
0 diff
(100 %id)
DB445127 testis .a 498 to 928 1 to 432       432/432
(100 %)
1 diff
(99.8 %id)
BC034776 Brain, Lung, Testis, adult, pooled whole .a 504 to 2104 1 to 1601 exact available from MGC, AAA   1601/1601
(100 %)
0 diff
(100 %id)
BI819382 pooled brain, lung, testis .a 504 to 1398 1 to 890       890/890
(100 %)
17 diff
(98.1 %id)
TI_57197593   .a 504 to 1398 95 to 984       890/984
(90 %)
22 diff
(97.8 %id)
AK292186 breast, tumor tissue .a 516 to 2092 1 to 1577 exact     1577/1577
(100 %)
0 diff
(100 %id)
DB004742 breast, tumor tissue .a 517 to 1110 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA668810 esophagus .a 526 to 1101 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB033160 testis .a 526 to 1076 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
BP368808 testis .a 526 to 1075 1 to 550       550/550
(100 %)
5 diff
(99.1 %id)
AK057266 testis .a 528 to 2106 1 to 1579 exact available from FLJ,   1579/1579
(100 %)
0 diff
(100 %id)
BP347783 brain .a 528 to 1107 1 to 583       583/583
(100 %)
5 diff
(99.2 %id)
DA680946 ovary .a 529 to 1082 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB020406 testis .a 529 to 1070 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB056225 testis .a 529 to 1091 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB057780 testis .a 529 to 1065 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DB059565 testis .a 529 to 1054 11 to 539   capped   529/529
(100 %)
5 diff
(99.1 %id)
FN171356 breast carcinoma .a 538 to 625 1 to 83       83/83
(100 %)
6 diff
(92.8 %id)
AX721043   .a 540 to 1152 1 to 615       615/615
(100 %)
2 diff
(99.7 %id)
BI829572 brain, medulla .a 540 to 1363 1 to 827       827/827
(100 %)
10 diff
(98.8 %id)
CD515464 White Matter .a 540 to 1415 1 to 885       885/886
(99 %)
8 diff
(99.1 %id)
TI_57175926   .a 540 to 1363 41 to 867       827/867
(95 %)
15 diff
(98.3 %id)
BI767614 pooled lung and spleen .a 550 to 1259 1 to 710       710/710
(100 %)
0 diff
(100 %id)
BM920443 pooled lung and spleen .a 550 to 1535 19 to 1012       994/1094
(90 %)
30 diff
(97.3 %id)
TI_57183843   .a 550 to 1259 37 to 746       710/746
(95 %)
6 diff
(99.2 %id)
TI_1948132100   .a 556 to 1535 121 to 1104       984/1382
(71 %)
25 diff
(98.2 %id)
TI_1948132101   .a 556 to 1443 131 to 1019       889/1035
(85 %)
16 diff
(98.5 %id)
TI_1948132418   .a 556 to 1452 121 to 1019       899/1345
(66 %)
24 diff
(98.3 %id)
TI_1948132419   .a 556 to 1443 130 to 1026       897/1040
(86 %)
29 diff
(97.3 %id)
TI_1948132731   .a 556 to 1531 127 to 1099       974/1343
(72 %)
26 diff
(98.1 %id)
TI_1948132732   .a 556 to 1429 125 to 1006       882/1038
(84 %)
26 diff
(97.5 %id)
TI_1948133036   .a 556 to 1448 124 to 1015       892/1352
(65 %)
13 diff
(99.1 %id)
TI_1948133037   .a 556 to 1278 125 to 851       727/1162
(62 %)
16 diff
(98.7 %id)
CV030269 mixed .a 557 to 1213 1 to 657       657/657
(100 %)
0 diff
(100 %id)
BI828586 brain, medulla .a 590 to 1259 1 to 670       670/670
(100 %)
0 diff
(100 %id)
TI_57175285   .a 590 to 1259 29 to 698       670/698
(95 %)
6 diff
(99.2 %id)
AW069362 bone marrow stroma .a 932 to 1394 1 to 463     Submitted on the opposite strand 463/463
(100 %)
0 diff
(100 %id)
TI_1948132733   .a 1111 to 1995 1021 to 123       899/1289
(69 %)
27 diff
(98.0 %id)
TI_1948132102   .a 1112 to 1995 1011 to 125       887/1243
(71 %)
19 diff
(98.5 %id)
TI_1948132420   .a 1152 to 2002 976 to 115       862/1292
(66 %)
36 diff
(97.3 %id)
TI_1948133038   .a 1303 to 1995 831 to 135       697/1355
(51 %)
10 diff
(99.3 %id)
TI_149294367   .a 1404 to 2112 798 to 96   AAA   703/705
(99 %)
8 diff
(98.9 %id)
BU617945 Bone, Subchondral Bone .a 1404 to 2104 719 to 19   AAA   701/703
(99 %)
0 diff
(100 %id)
BQ016312 lung, Metastatic Chondrosarcoma .a 1448 to 2104 675 to 19   AAA   657/667
(98 %)
1 diff
(99.9 %id)
BU683145 lung .a 1532 to 2112 598 to 19   AAA   580/590
(98 %)
1 diff
(99.9 %id)
TI_149298457   .a 1533 to 2106 661 to 89   AAA   573/799
(71 %)
2 diff
(99.8 %id)
AI826091 anaplastic oligodendroglioma, brain .a 1595 to 2110 534 to 18   AAA   517/517
(100 %)
5 diff
(99.1 %id)
BM983192 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1635 to 2106 488 to 17   AAA   472/472
(100 %)
0 diff
(100 %id)
AI361512 brain, glioblastoma (pooled) .a 1653 to 2103 453 to 3       451/453
(99 %)
0 diff
(100 %id)
AW974034   .a 1676 to 2105 430 to 1     Submitted on the opposite strand 430/552
(77 %)
0 diff
(100 %id)
BE858530 brain, glioblastoma (pooled) .a 1676 to 1907 232 to 1       232/265
(87 %)
12 diff
(95.5 %id)
AW008827 brain, glioblastoma (pooled) .a 1688 to 2100 417 to 1       417/417
(100 %)
4 diff
(99.1 %id)
AA861038   .a 1709 to 2104 408 to 13   AAA   396/396
(100 %)
3 diff
(99.3 %id)
AA961076 pooled .a 1709 to 2104 396 to 1       396/396
(100 %)
2 diff
(99.5 %id)
DB335803 testis .a 1728 to 2106 379 to 1       379/379
(100 %)
1 diff
(99.8 %id)
BG184009   .a 1752 to 2094 32 to 372       341/395
(86 %)
6 diff
(98.5 %id)
BM930983 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1782 to 2104 1 to 323   fully sequenced, AAA   323/323
(100 %)
0 diff
(100 %id)
DB510127 testis .a 1790 to 2104 1 to 315     Submitted on the opposite strand 315/315
(100 %)
8 diff
(97.5 %id)
BM684476 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1928 to 2104 193 to 17   fully sequenced, AAA   177/177
(100 %)
0 diff
(100 %id)
AI368484 brain, glioblastoma (pooled) .a 1938 to 2100 163 to 1       163/163
(100 %)
0 diff
(100 %id)
AI658621 Prostate .a 1961 to 2108 168 to 21   AAA   148/148
(100 %)
1 diff
(99.4 %id)
BC037402 Brain, adult medulla .b 1 to 2465 1 to 2465 Q86* tiling clone, available from MGC, AAA   2465/2465
(100 %)
2 diff
(100.0 %id)
BI520394 brain, medulla .b 1 to 787 1 to 792   available from MGC,   792/792
(100 %)
30 diff
(96.3 %id)
TI_43964155   .b 1 to 787 32 to 823       792/823
(96 %)
27 diff
(96.8 %id)
DB043443 testis .c 1 to 557 2 to 558   tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
DB043447 testis .c 1 to 276 2 to 277   capped   276/276
(100 %)
0 diff
(100 %id)
DB040091 testis .c 28 to 607 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
BM926674 pooled lung and spleen .c 39 to 976 6 to 954 C258M D260W V261T F262S Y263S ... tiling clone,   949/1130
(83 %)
28 diff
(97.6 %id)
AK093446 testis .d 1 to 1618 2 to 1619   tiling clone, available from FLJ,   1619/1619
(100 %)
0 diff
(100 %id)
AX748132   .d 1 to 1618 2 to 1619       1619/1619
(100 %)
0 diff
(100 %id)
DB038231 testis .d 1 to 564 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB337613 testis .d 1087 to 1618 532 to 1       532/532
(100 %)
0 diff
(100 %id)
AL040402 testis .e-u 1 to 696 1 to 695   tiling clone,   695/695
(100 %)
7 diff
(99.0 %id)
AK093333 testis .e-u 522 to 2415 1 to 1894 exact tiling clone, available from FLJ,   1894/1894
(100 %)
1 diff
(100.0 %id)
AX748058   .e-u 522 to 2415 1 to 1894 exact     1894/1894
(100 %)
1 diff
(100.0 %id)
DA891852 rectum .e-u 523 to 981 2 to 460   capped   459/459
(100 %)
0 diff
(100 %id)
DB031885 testis .e-u 523 to 1096 2 to 576 L42P G43R S44E L45P H46P ... capped   575/575
(100 %)
2 diff
(99.7 %id)
DB051234 testis .e-u 527 to 1112 2 to 589 R40L R41A L42A G43R S44E ... capped   588/588
(100 %)
2 diff
(99.7 %id)
AL040403 testis .e-u 1780 to 2415 666 to 34   AAA   633/633
(100 %)
3 diff
(99.6 %id)
DB337094 testis .e-u 1857 to 2415 559 to 1       559/559
(100 %)
0 diff
(100 %id)
AW511637 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .e-u 2124 to 2497 374 to 1   tiling clone,   374/374
(100 %)
4 diff
(99.0 %id)
DB046516 testis .f 1 to 561 2 to 562 D101G tiling clone, capped   561/561
(100 %)
2 diff
(99.7 %id)
BX091015 pooled .g 1 to 398 1 to 398 exact tiling clone,   398/398
(100 %)
0 diff
(100 %id)
AI915344 pooled .g 294 to 543 262 to 13   tiling clone, AAA   250/250
(100 %)
4 diff
(98.4 %id)
AW663881 pooled .h 1 to 488 493 to 6 exact tiling clone,   488/493
(98 %)
0 diff
(100 %id)
BU954715 mixed (pool of 40 RNAs) .i 1 to 541 1 to 542 exact tiling clone, AAA   542/542
(100 %)
7 diff
(98.8 %id)
AA580077 breast .i 108 to 543 436 to 1 exact tiling clone,   436/436
(100 %)
0 diff
(100 %id)
BX100680 brain, glioblastoma (pooled) .j 1 to 492 1 to 492 exact tiling clone,   492/500
(98 %)
1 diff
(99.8 %id)
AI359456 brain, glioblastoma (pooled) .j 27 to 490 464 to 1 exact     464/464
(100 %)
0 diff
(100 %id)
AI362274 brain, glioblastoma (pooled) .j 47 to 490 444 to 1 exact     444/444
(100 %)
0 diff
(100 %id)
BX485435   Gene C9orf98, variant not shown              
BX485436   Gene C9orf98, variant not shown       AAA      
AA489900   Gene C9orf98, variant not shown         This clone was ignored    
AA490055   Gene C9orf98, variant not shown         This clone was ignored    
AW071553 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma Gene C9orf98, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g, .h, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC