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Gene SURF2andC9orf96TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
137 supporting clones for gene SURF2andC9orf96 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI458908 testis .a 1 to 706 1 to 704   tiling clone,   704/704
(100 %)
20 diff
(97.2 %id)
BC036504 testis .a 6 to 2783 1 to 2777 K473E tiling clone, available from MGC, AAA   2777/2777
(100 %)
2 diff
(100.0 %id)
NM_153710.3   .a 6 to 2784 1 to 2779 exact RefSeq,   2779/2779
(100 %)
0 diff
(100 %id)
DN989936 brain, whole brain .a 6 to 499 27 to 519       493/520
(94 %)
9 diff
(98.3 %id)
DA401193 thalamus .a 55 to 333 2 to 280   capped   279/279
(100 %)
1 diff
(99.7 %id)
EL737188 mixed .a 67 to 732 1 to 666       666/666
(100 %)
3 diff
(99.6 %id)
DB312161 thalamus .a 2096 to 2601 506 to 1   tiling clone,   506/513
(98 %)
6 diff
(98.9 %id)
BG332915 large cell carcinoma, lung .b 2 to 642 1 to 639   tiling clone,   639/639
(100 %)
3 diff
(99.6 %id)
BC014411 Lung, large cell carcinoma .b 3 to 807 1 to 805 S213G available from MGC, AAA   805/805
(100 %)
1 diff
(99.9 %id)
CX753182 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 4 to 749 1 to 745     Submitted on the opposite strand 745/745
(100 %)
1 diff
(99.9 %id)
Z35094   .b 4 to 815 1 to 813 A24T P37T D142E G143A G160A ...     813/813
(100 %)
8 diff
(99.1 %id)
BU595848 mixed (pool of 40 RNAs) .b 5 to 796 1 to 798 P173L E174S L175Y F176S T177P ...     798/804
(99 %)
23 diff
(97.2 %id)
CA488379   .b 5 to 1001 1 to 1000 D186G G187W D188G G189W T190H ... tiling clone,   1000/1001
(99 %)
27 diff
(97.4 %id)
BU600684 mixed (pool of 40 RNAs) .b 16 to 674 1 to 671       671/923
(72 %)
25 diff
(97.3 %id)
BP199922 amygdala .b 20 to 602 1 to 583       583/583
(100 %)
0 diff
(100 %id)
CR456753   .b 20 to 790 1 to 771 exact     771/771
(100 %)
0 diff
(100 %id)
CV028602 mixed .b 20 to 672 1 to 651       651/654
(99 %)
7 diff
(99.0 %id)
BP236867 coronary artery .b 20 to 606 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
AU099663   .b 20 to 319 1 to 300       300/300
(100 %)
0 diff
(100 %id)
AU105894   .b 20 to 69 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BE969731 Pancreas .b 21 to 419 1 to 398       398/398
(100 %)
1 diff
(99.8 %id)
BE909323 epithelioid carcinoma, Pancreas .b 28 to 803 1 to 773       773/1074
(71 %)
20 diff
(98.2 %id)
BI118187 lung, small cell carcinoma .b 30 to 816 1 to 785   tiling clone,   788/796
(98 %)
11 diff
(98.7 %id)
BU161365 melanotic melanoma, skin .b 30 to 706 36 to 720       685/891
(76 %)
43 diff
(95.2 %id)
AI125355   .b 32 to 807 799 to 21   AAA   779/785
(99 %)
13 diff
(98.4 %id)
BM910467 astrocytoma grade IV, cell line, brain .b 32 to 808 1 to 777   AAA   777/777
(100 %)
6 diff
(99.3 %id)
BM910812 astrocytoma grade IV, cell line, brain .b 32 to 705 1 to 679       679/1145
(59 %)
26 diff
(97.8 %id)
BM797376 Ascites, stomach .b 32 to 426 1 to 395       395/395
(100 %)
1 diff
(99.8 %id)
TI_149286337   .b 34 to 807 864 to 97   AAA   768/1150
(66 %)
13 diff
(98.9 %id)
BM713878 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 38 to 640 1 to 603       603/603
(100 %)
3 diff
(99.6 %id)
BM784792 Ascites, stomach .b 43 to 408 1 to 367       367/367
(100 %)
1 diff
(99.8 %id)
BE781163 eye, retinoblastoma .b 44 to 613 1 to 573       573/789
(72 %)
10 diff
(98.8 %id)
BE393806 endometrium, adenocarcinoma cell line, uterus .b 55 to 704 1 to 653       653/713
(91 %)
20 diff
(97.2 %id)
BP196903 adrenal gland .b 98 to 566 114 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA508993 brain .b 98 to 564 117 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
BP244646 Kidney .b 98 to 555 127 to 584       584/584
(100 %)
0 diff
(100 %id)
BP247147 Kidney .b 98 to 567 118 to 587       587/587
(100 %)
1 diff
(99.9 %id)
BP247579 Kidney .b 98 to 577 118 to 597       597/597
(100 %)
1 diff
(99.9 %id)
AW328587 cervix .b 98 to 567 125 to 589   fully sequenced,   581/589
(98 %)
8 diff
(98.7 %id)
NM_017503.3   .b 98 to 815 127 to 844 exact RefSeq,   844/844
(100 %)
0 diff
(100 %id)
BM789997 stomach .b 98 to 548 120 to 570       570/570
(100 %)
0 diff
(100 %id)
BP246936 Kidney .b 118 to 648 1 to 531       531/533
(99 %)
3 diff
(99.5 %id)
BX283634 cervix .b 125 to 512 1 to 388       388/388
(100 %)
0 diff
(100 %id)
TI_149286158   .b 125 to 807 766 to 84   AAA   683/683
(100 %)
1 diff
(99.9 %id)
N50274 multiple sclerosis lesions .b 126 to 237 1 to 112       112/116
(96 %)
3 diff
(97.5 %id)
BU629580 cell lines, Chondrosarcoma .b 139 to 807 687 to 19   AAA   669/669
(100 %)
1 diff
(99.9 %id)
BU680977 lung .b 146 to 807 680 to 19   AAA   662/662
(100 %)
1 diff
(99.9 %id)
CA415377 Chondrosarcoma Grade II, Left Pelvis .b 193 to 807 633 to 19   AAA   615/615
(100 %)
2 diff
(99.7 %id)
BM971940 lung .b 202 to 807 624 to 19   AAA   606/606
(100 %)
0 diff
(100 %id)
TI_154192156   .b 229 to 815 47 to 634   AAA   588/634
(92 %)
7 diff
(98.9 %id)
CF130214 Chondrosarcoma Lung Metastasis cell lines, lung .b 236 to 815 1 to 581   AAA   581/581
(100 %)
3 diff
(99.5 %id)
AI609350 ovary, tumor, 5 pooled (see description) .b 253 to 807 579 to 26   AAA   554/562
(98 %)
20 diff
(96.5 %id)
AI808831 pooled .b 253 to 820 570 to 3   tiling clone,   568/578
(98 %)
2 diff
(99.7 %id)
AW007861 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 253 to 809 553 to 2   tiling clone,   552/584
(94 %)
9 diff
(98.5 %id)
BF125681 melanotic melanoma, skin .b 258 to 808 1 to 552       552/604
(91 %)
11 diff
(98.2 %id)
BF437785 Prostate .b 260 to 809 557 to 8       550/557
(98 %)
2 diff
(99.7 %id)
BF125515 melanotic melanoma, skin .b 260 to 787 1 to 527       527/527
(100 %)
3 diff
(99.5 %id)
BU565492 mixed (pool of 40 RNAs) .b 294 to 806 1 to 513       513/514
(99 %)
3 diff
(99.5 %id)
AA758119   .b 308 to 806 509 to 10       501/509
(98 %)
24 diff
(95.3 %id)
BQ672017 epidermoid carcinoma, cell line, salivary gland .b 325 to 807 1 to 483   AAA   483/483
(100 %)
0 diff
(100 %id)
AA909110 pooled .b 332 to 809 471 to 5       467/471
(99 %)
17 diff
(96.4 %id)
AI859034 anaplastic oligodendroglioma, brain .b 335 to 807 484 to 12   AAA   473/473
(100 %)
7 diff
(98.6 %id)
BF342180 brain, glioblastoma with EGFR amplification .b 340 to 807 15 to 480   AAA   466/480
(97 %)
8 diff
(98.4 %id)
AW614570 Kidney .b 350 to 809 462 to 3       460/462
(99 %)
0 diff
(100 %id)
AA847371 colon, colon tumor .b 357 to 807 466 to 18   AAA   449/450
(99 %)
5 diff
(98.9 %id)
BE898121 melanotic melanoma, skin .b 360 to 807 1 to 450   AAA   450/450
(100 %)
2 diff
(99.6 %id)
CU455570 epidermis .b 368 to 696 11 to 339       329/348
(94 %)
8 diff
(97.8 %id)
AI208203   .b 383 to 814 436 to 4       433/444
(97 %)
5 diff
(98.9 %id)
AA587491 breast .b 406 to 807 416 to 14   AAA   403/438
(92 %)
13 diff
(97.1 %id)
EC491829 Prostate .b 428 to 524 1 to 97       97/97
(100 %)
0 diff
(100 %id)
EC534764 Prostate .b 428 to 524 1 to 95       95/95
(100 %)
2 diff
(97.9 %id)
N49224 multiple sclerosis lesions .b 453 to 815 390 to 28   AAA   363/367
(98 %)
3 diff
(99.2 %id)
AW328588 cervix .b 506 to 807 321 to 20   fully sequenced, AAA   302/302
(100 %)
1 diff
(99.7 %id)
AI351835 pooled germ cell tumors .b 537 to 807 293 to 23   AAA   271/272
(99 %)
21 diff
(92.3 %id)
BF911048 uterus_tumor .b 545 to 807 276 to 13     Submitted on the opposite strand 264/284
(92 %)
2 diff
(99.3 %id)
AA775505 heart .b 549 to 809 260 to 1       260/260
(100 %)
2 diff
(99.3 %id)
BQ379080 uterus_tumor .b 550 to 809 274 to 15       260/274
(94 %)
1 diff
(99.7 %id)
M91494   .b 585 to 814 238 to 11   AAA   228/229
(99 %)
3 diff
(98.7 %id)
F13594   .b 597 to 809 217 to 5       213/218
(97 %)
5 diff
(97.8 %id)
AA548399 normal prostate, Prostate .b 604 to 807 228 to 26   AAA   203/203
(100 %)
1 diff
(99.6 %id)
EC572689 Prostate .b 621 to 727 1 to 107       107/107
(100 %)
2 diff
(98.2 %id)
AA317816 retina .b 622 to 807 186 to 1     Submitted on the opposite strand 186/368
(50 %)
4 diff
(99.0 %id)
BF223408 pooled germ cell tumors .b 650 to 785 136 to 1       136/136
(100 %)
8 diff
(94.2 %id)
DV460804 cochlea, ear .b 672 to 809 1 to 138       138/163
(84 %)
2 diff
(98.8 %id)
BF594552 colon, colon tumor, RER+ .b 692 to 785 94 to 1       94/94
(100 %)
1 diff
(99.0 %id)
EC473635 Prostate .b 725 to 809 90 to 7       84/96
(87 %)
0 diff
(100 %id)
BG401165 Kidney .c 1 to 677 1 to 660   tiling clone,   660/899
(73 %)
33 diff
(96.4 %id)
BX094512 brain, glioblastoma (pooled) .c 315 to 779 1 to 465   tiling clone,   465/465
(100 %)
0 diff
(100 %id)
BG104184 melanotic melanoma, skin .c 401 to 972 1 to 575   tiling clone,   575/1054
(54 %)
7 diff
(99.4 %id)
AK131545 thalamus .d 1 to 3121 1 to 3121 exact tiling clone, available from FLJ,   3121/3121
(100 %)
4 diff
(99.9 %id)
AK294947 brain .e 1 to 1612 2 to 1613 exact tiling clone,   1613/1613
(100 %)
4 diff
(99.8 %id)
DA231208 brain .e 1 to 538 2 to 539   capped   538/539
(99 %)
1 diff
(99.9 %id)
AL044935 testis .e 121 to 520 1 to 400       400/400
(100 %)
0 diff
(100 %id)
AK131533 amygdala .e 207 to 5881 1 to 5680 exact tiling clone, available from FLJ,   5680/5680
(100 %)
11 diff
(99.9 %id)
DA193170 amygdala .e 208 to 801 2 to 595 R142I capped   594/594
(100 %)
1 diff
(99.9 %id)
DB096673 testis .e 950 to 1504 2 to 556   tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
BX114483 whole brain .e 1446 to 1973 1 to 528       528/528
(100 %)
0 diff
(100 %id)
DB096695 testis .e 1580 to 2135 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB063981 testis .e 1909 to 2463 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BF685436 leiomyosarcoma cell line, uterus .e 3471 to 3773 302 to 1   available from MGC, Submitted on the opposite strand 302/302
(100 %)
3 diff
(99.1 %id)
DB303446 amygdala .e 5345 to 5881 538 to 1       538/538
(100 %)
1 diff
(99.9 %id)
DB341792 testis .e 5610 to 6063 454 to 1   tiling clone,   454/456
(99 %)
6 diff
(98.7 %id)
BP245932 Kidney .f 1 to 448 2 to 449 Q52R tiling clone,   449/451
(99 %)
3 diff
(99.4 %id)
DB145784 thymus .g 1 to 492 2 to 494 exact tiling clone, capped   493/493
(100 %)
1 diff
(99.8 %id)
CN428031 embryonic stem cells, DMSO-treated H9 cellline .g 13 to 514 1 to 502 exact tiling clone,   502/502
(100 %)
0 diff
(100 %id)
CN428030 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .g 98 to 612 114 to 628 Q133H tiling clone,   628/628
(100 %)
7 diff
(98.9 %id)
BP287302 lung .g 98 to 490 114 to 507 E42*     507/583
(86 %)
19 diff
(96.8 %id)
DB095841 testis .h 1 to 564 2 to 565   tiling clone, capped   564/564
(100 %)
0 diff
(100 %id)
TI_151808815   .h 4163 to 4774 75 to 688   tiling clone, AAA   614/614
(100 %)
6 diff
(99.1 %id)
BQ184985 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .h 4216 to 4775 578 to 19   tiling clone, AAA   560/560
(100 %)
1 diff
(99.9 %id)
DB341739 testis .h 4439 to 4957 519 to 1   tiling clone,   519/519
(100 %)
4 diff
(99.3 %id)
AA492058 Liver .h 4924 to 5311 18 to 404   tiling clone,   387/404
(95 %)
6 diff
(98.6 %id)
CD630108   .h 5097 to 5703 17 to 620   tiling clone,   604/620
(97 %)
9 diff
(98.6 %id)
BF983763 duodenal adenocarcinoma, cell line, small intestine .h 5277 to 5996 1 to 724   tiling clone,   724/975
(74 %)
29 diff
(97.1 %id)
BE839333 prostate_normal .h 5540 to 5800 1 to 260   tiling clone,   260/329
(79 %)
7 diff
(97.9 %id)
DA107585 cerebellum .i 1 to 541 2 to 542   tiling clone, capped   541/545
(99 %)
1 diff
(99.9 %id)
BQ944986 carcinoma, cell line, Prostate .i 349 to 1025 1 to 680 exact tiling clone,   680/680
(100 %)
3 diff
(99.6 %id)
Z43309 brain, total brain .j 1 to 249 1 to 250   tiling clone,   250/250
(100 %)
1 diff
(99.6 %id)
R53669 whole brain .j 2 to 429 1 to 436   tiling clone,   436/444
(98 %)
13 diff
(97.1 %id)
R53558 whole brain .j 1199 to 1619 434 to 14   tiling clone, AAA   421/421
(100 %)
10 diff
(97.7 %id)
Z39384 brain, total brain .j 1298 to 1619 321 to 1   tiling clone,   321/321
(100 %)
3 diff
(99.1 %id)
TI_154052471   .k-u 1 to 611 692 to 82 exact AAA   611/984
(62 %)
11 diff
(98.9 %id)
BQ447298 Knee, Osteoarthritic Cartilage .k-u 1 to 611 628 to 18 exact tiling clone, AAA   611/616
(99 %)
11 diff
(98.3 %id)
CA415237 Knee, Osteoarthritic Cartilage .k-u 1 to 611 628 to 18 exact AAA   611/616
(99 %)
11 diff
(98.3 %id)
BE736189 adenocarcinoma, Pancreas .l 1 to 426 1 to 426 G86A R87G R88G Y89T Q90S ... tiling clone, AAA   426/426
(100 %)
2 diff
(99.6 %id)
AA418660 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .m 1 to 554 18 to 571   tiling clone,   554/571
(97 %)
6 diff
(99.0 %id)
AV763896 bone marrow .m 194 to 947 1 to 754 S43A S47N G49S V54L D65G ... tiling clone,   754/779
(96 %)
34 diff
(95.7 %id)
AI554166 pooled .m 777 to 1195 419 to 1   tiling clone,   419/419
(100 %)
4 diff
(99.1 %id)
AW183662 pooled .m 797 to 1208 426 to 15   tiling clone, AAA   412/412
(100 %)
5 diff
(98.8 %id)
AI658791 Prostate .m 978 to 1210 235 to 1   tiling clone,   235/235
(100 %)
2 diff
(99.2 %id)
BX472607   .n 1 to 583 6 to 589 E35R L36A P37A C38L R39P ... tiling clone,   589/589
(100 %)
7 diff
(98.9 %id)
DA319411 hippocampus .n 27 to 526 2 to 501   tiling clone, capped   500/500
(100 %)
0 diff
(100 %id)
AI799141 pooled .o 1 to 266 271 to 6 exact tiling clone,   266/271
(98 %)
0 diff
(100 %id)
BG697742 skin .p-u 1 to 810 1 to 811 exact tiling clone,   811/811
(100 %)
4 diff
(99.6 %id)
BM310060 insulinoma, Pancreas .p-u 436 to 877 1 to 442       442/442
(100 %)
6 diff
(98.7 %id)
CK905279 insulinoma, Pancreas .p-u 473 to 1007 535 to 1       535/535
(100 %)
1 diff
(99.9 %id)
BM310328 insulinoma, Pancreas .p-u 617 to 1047 431 to 1   tiling clone,   431/431
(100 %)
0 diff
(100 %id)
AI280663 ovary, tumor, 5 pooled (see description) .p-u 780 to 1064 285 to 1   tiling clone,   285/285
(100 %)
0 diff
(100 %id)
DB077888 testis .q 1 to 571 2 to 572 exact tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DB110346 thymus .r -11 to 565 2 to 578 exact tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
DA451369 tongue, tumor tissue .r 1 to 516 2 to 518 L36H P37A C38L R39P L40P ... capped   517/517
(100 %)
2 diff
(99.7 %id)
DA517514 brain .r 29 to 524 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
BM798152 Ascites, stomach .r 232 to 545 1 to 314       314/314
(100 %)
1 diff
(99.7 %id)
BC007959 Uterus, leiomyosarcoma Gene SURF2andC9orf96, variant not shown       available from MGC, Submitted on the opposite strand    
TI_1948085119   Gene SURF2andC9orf96, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l, .m, .n, .o, .p-u, .q, .r Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI