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Gene NAIF1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
146 supporting clones for gene NAIF1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM931058 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1 to 647 1 to 647   tiling clone,   647/647
(100 %)
2 diff
(99.7 %id)
BF724764 eye, Iris .a 525 to 1136 1 to 612   tiling clone,   612/612
(100 %)
1 diff
(99.9 %id)
AA281868 germinal center B cell .a 752 to 1161 1 to 407       407/407
(100 %)
5 diff
(98.8 %id)
BG008293 placenta_normal .a 963 to 1390 11 to 440       430/440
(97 %)
6 diff
(98.7 %id)
BM684531 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1012 to 1713 717 to 19   tiling clone, AAA   699/699
(100 %)
4 diff
(99.5 %id)
CA426093 Bone, Subchondral Bone .a 1040 to 1709 688 to 19   AAA   670/670
(100 %)
2 diff
(99.8 %id)
BC047160 Brain, anaplastic oligodendroglioma with1p/19q loss .a 1078 to 1707 1 to 630   available from MGC, AAA   630/630
(100 %)
1 diff
(99.9 %id)
BG912959 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1079 to 1637 1 to 559   available from MGC,   559/559
(100 %)
3 diff
(99.5 %id)
BF724763 eye, Iris .a 1143 to 1713 594 to 24   tiling clone, AAA   571/571
(100 %)
1 diff
(99.9 %id)
AA281584 germinal center B cell .a 1295 to 1590 297 to 1       297/297
(100 %)
1 diff
(99.7 %id)
DA604999   .b 1 to 534 2 to 535   tiling clone, capped   534/534
(100 %)
0 diff
(100 %id)
DA665611   .b 520 to 1011 2 to 493   tiling clone, capped   492/492
(100 %)
1 diff
(99.8 %id)
DA668298 esophagus .b 520 to 970 2 to 452   capped   451/451
(100 %)
2 diff
(99.6 %id)
DA003444   .b 539 to 1108 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DR001704 fetal brain .b 548 to 1045 1 to 498       498/501
(99 %)
6 diff
(98.9 %id)
BQ231034 epithelioid carcinoma, Pancreas .b 551 to 1291 1 to 742       742/844
(87 %)
12 diff
(98.6 %id)
AK122729 Liver .b 552 to 3171 1 to 2620 exact tiling clone, available from FLJ,   2620/2620
(100 %)
4 diff
(99.9 %id)
NM_197956.3   .b 552 to 3948 1 to 3397 exact RefSeq, AAA   3397/3397
(100 %)
1 diff
(100.0 %id)
DA815363   .b 552 to 1024 2 to 475   capped   474/474
(100 %)
2 diff
(99.6 %id)
DA901926   .b 552 to 1109 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA021784   .b 553 to 1107 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DA038065   .b 553 to 1042 2 to 491   capped   490/490
(100 %)
2 diff
(99.6 %id)
DA372175 thalamus .b 553 to 1111 2 to 560   capped   559/560
(99 %)
2 diff
(99.7 %id)
DA445335 tongue, tumor tissue .b 553 to 1132 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA452095 tongue, tumor tissue .b 553 to 1115 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA453600 tongue, tumor tissue .b 553 to 1124 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA487981 brain .b 553 to 1105 2 to 556   capped   555/555
(100 %)
3 diff
(99.5 %id)
DA510225 brain .b 553 to 994 2 to 443   capped   442/444
(99 %)
8 diff
(98.2 %id)
DA539960 Liver .b 553 to 1345 2 to 792   capped   791/791
(100 %)
14 diff
(98.3 %id)
DA552498   .b 553 to 1076 2 to 526   capped   525/525
(100 %)
2 diff
(99.7 %id)
DA648505   .b 553 to 1090 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA661395   .b 553 to 1109 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA766450 tongue .b 553 to 1124 2 to 574   capped   573/575
(99 %)
3 diff
(99.5 %id)
DA808514 brain .b 553 to 1042 2 to 491   capped   490/490
(100 %)
1 diff
(99.8 %id)
DA826217 pericardium .b 553 to 1038 2 to 487   capped   486/486
(100 %)
2 diff
(99.6 %id)
DA907796   .b 553 to 1251 2 to 702   capped   701/701
(100 %)
7 diff
(99.1 %id)
DA913894   .b 553 to 1111 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DA942669 Spleen .b 553 to 1124 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA949036 Spleen .b 553 to 1109 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA955824 Spleen .b 553 to 1103 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA969439 stomach .b 553 to 1057 2 to 506   capped   505/505
(100 %)
1 diff
(99.9 %id)
DB004585 breast, tumor tissue .b 553 to 1124 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DB181757 liver, tumor tissue .b 553 to 1124 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DB189088 liver, tumor tissue .b 553 to 1133 2 to 582   capped   581/581
(100 %)
3 diff
(99.5 %id)
DB253940 uterus .b 553 to 1042 2 to 491   capped   490/490
(100 %)
2 diff
(99.6 %id)
DB056696 testis .b 556 to 919 2 to 365   capped   364/364
(100 %)
1 diff
(99.8 %id)
BM464251 leiomyosarcoma, uterus .b 560 to 1455 22 to 921       900/1129
(79 %)
31 diff
(97.3 %id)
DR006598 Spleen .b 567 to 1170 1 to 605       605/606
(99 %)
8 diff
(98.7 %id)
BM905218 melanotic melanoma, skin .b 570 to 1255 30 to 728       699/1176
(59 %)
36 diff
(97.0 %id)
DA145903 amygdala .b 602 to 1170 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA546123   .b 602 to 1111 2 to 511   capped   510/511
(99 %)
1 diff
(99.9 %id)
DA273088 caudate nucleus .b 604 to 1156 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA120866 cerebellum .b 609 to 1076 2 to 469   capped   468/468
(100 %)
1 diff
(99.8 %id)
BM543547 brain, hippocampus .b 613 to 1442 25 to 874       850/1059
(80 %)
34 diff
(96.8 %id)
DB189900 lung, tumor tissue .b 616 to 1124 2 to 510   capped   509/509
(100 %)
1 diff
(99.9 %id)
DB012885 esophageal, tumor tissue .b 623 to 996 2 to 375   capped   374/374
(100 %)
0 diff
(100 %id)
DA577466   .b 626 to 1175 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
DA958297 Spleen .b 626 to 1181 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DB191861 ovary, tumor tissue .b 626 to 1157 2 to 532   capped   531/531
(100 %)
2 diff
(99.7 %id)
DA293118 hippocampus .b 628 to 1187 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DB020844 testis .b 628 to 1054 2 to 429   capped   428/428
(100 %)
1 diff
(99.8 %id)
DA054988 cerebellum .b 635 to 1107 2 to 474   capped   473/473
(100 %)
0 diff
(100 %id)
BM016964 astrocytoma grade IV, cell line, brain .b 636 to 1107 1 to 473       473/704
(67 %)
3 diff
(99.6 %id)
TI_59387203   .b 637 to 1107 61 to 532   AAA   472/688
(68 %)
3 diff
(99.6 %id)
DA052796   .b 650 to 1206 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DA681364 ovary .b 654 to 1217 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DB038760 testis .b 665 to 1247 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
BM914393 Spleen .b 683 to 1281 1 to 608       608/1244
(48 %)
23 diff
(98.2 %id)
BG340504 B-cells, primary B-cells from tonsils (cell line) .b 730 to 1372 1 to 652       652/672
(97 %)
19 diff
(97.2 %id)
CO393603 Chondrosarcoma Lung Metastasis cell lines, lung .b 730 to 1276 31 to 568       538/722
(74 %)
18 diff
(97.6 %id)
BM853143 Ascites, stomach .b 749 to 1150 40 to 442       403/442
(91 %)
6 diff
(98.7 %id)
AL833392 melanoma (MeWo cell line) .b 760 to 3942 1 to 3181 exact tiling clone, available from DKFZ, AAA   3181/3181
(100 %)
5 diff
(99.9 %id)
CV029197 mixed .b 771 to 1058 1 to 288       288/288
(100 %)
10 diff
(96.6 %id)
TI_154115576   .b 1031 to 1894 946 to 89   AAA   858/972
(88 %)
15 diff
(98.5 %id)
CA449283 Chondrosarcoma, Left Pelvis .b 1185 to 1894 728 to 19   AAA   710/710
(100 %)
1 diff
(99.9 %id)
CA426906 cell lines, Chondrosarcoma .b 1202 to 1894 711 to 19   AAA   693/693
(100 %)
0 diff
(100 %id)
DN831108 pooled .b 1225 to 1728 503 to 1     Submitted on the opposite strand 503/503
(100 %)
4 diff
(99.3 %id)
CA310459 cell lines, Chondrosarcoma .b 1358 to 1894 555 to 19   AAA   537/537
(100 %)
0 diff
(100 %id)
BE385388 melanotic melanoma, skin .b 1364 to 1998 1 to 633       633/668
(94 %)
7 diff
(99.0 %id)
AW449992   .b 1591 to 1886 313 to 18   AAA   296/297
(99 %)
3 diff
(99.0 %id)
BM511394 insulinoma, Pancreas .b 1802 to 2328 8 to 534       527/534
(98 %)
10 diff
(98.2 %id)
CK823846 insulinoma, Pancreas .b 1802 to 2369 8 to 575       568/575
(98 %)
6 diff
(99.0 %id)
DB109149 thymus .b 1840 to 2393 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BM750316 stomach .b 1892 to 2431 1 to 541       541/541
(100 %)
5 diff
(99.1 %id)
BM740522 stomach .b 1893 to 2420 1 to 528       528/528
(100 %)
0 diff
(100 %id)
BM740427 stomach .b 1893 to 2448 1 to 556       556/556
(100 %)
1 diff
(99.9 %id)
BM740504 stomach .b 1893 to 2417 1 to 524       524/524
(100 %)
2 diff
(99.7 %id)
BM759701 stomach .b 1893 to 2466 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
BM757831 stomach .b 1893 to 2408 1 to 516       516/516
(100 %)
0 diff
(100 %id)
AA359485 lung .b 2075 to 2249 1 to 175       175/175
(100 %)
0 diff
(100 %id)
AA381105   .b 2104 to 2421 1 to 320       320/320
(100 %)
4 diff
(98.8 %id)
AW963898   .b 2105 to 2636 1 to 534       534/534
(100 %)
13 diff
(97.6 %id)
BE741976 adenocarcinoma cell line, ovary .b 2136 to 2930 28 to 809       782/985
(79 %)
28 diff
(97.2 %id)
CB137031 Liver .b 2172 to 2567 1 to 396       396/396
(100 %)
1 diff
(99.8 %id)
DA569504 whole embryo, mainly head .b 2492 to 3262 2 to 775   capped   774/774
(100 %)
5 diff
(99.4 %id)
AW769468 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .b 2542 to 3015 476 to 6       471/476
(98 %)
0 diff
(100 %id)
BU162007 eye, retinoblastoma .b 2583 to 3328 1 to 757       757/916
(82 %)
26 diff
(97.2 %id)
BX463728 brain, fetal brain .b 2584 to 3250 1 to 667       667/821
(81 %)
10 diff
(98.8 %id)
BF131845 hypernephroma, Kidney .b 2584 to 3093 1 to 502       502/512
(98 %)
24 diff
(95.4 %id)
BF796375 lymph, lymphoma, cell line .b 2599 to 3369 18 to 788   tiling clone,   771/925
(83 %)
26 diff
(97.2 %id)
BM510565 insulinoma, Pancreas .b 2696 to 3135 440 to 1       440/440
(100 %)
1 diff
(99.8 %id)
DB318067 Liver .b 2700 to 3171 475 to 1       475/505
(94 %)
21 diff
(95.9 %id)
AW956385   .b 3203 to 3791 1 to 585       585/587
(99 %)
11 diff
(98.2 %id)
AA340072 epithelium, skin .b 3206 to 3499 1 to 294       294/294
(100 %)
0 diff
(100 %id)
BG009209 placenta_normal .b 3214 to 3464 251 to 1       251/251
(100 %)
2 diff
(99.3 %id)
CA312400 Human Lung Epithelial cells, lung .b 3221 to 3944 740 to 17   AAA   724/727
(99 %)
2 diff
(99.8 %id)
BX463727 brain, fetal brain .b 3266 to 3889 660 to 27       634/999
(63 %)
34 diff
(96.6 %id)
BP432212   .b 3289 to 3749 1 to 461       461/461
(100 %)
3 diff
(99.4 %id)
AI831258 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 3356 to 3949 597 to 3       595/600
(99 %)
0 diff
(100 %id)
CA427966 Bone, Subchondral Bone .b 3361 to 3948 606 to 19   AAA   588/588
(100 %)
0 diff
(100 %id)
BE293321 adenocarcinoma cell line, colon .b 3365 to 3946 1 to 583       583/613
(95 %)
8 diff
(98.7 %id)
DB356146 whole embryo, mainly head .b 3385 to 3948 571 to 13   AAA   559/559
(100 %)
9 diff
(98.4 %id)
DB320058   .b 3386 to 3941 556 to 1       556/556
(100 %)
0 diff
(100 %id)
AA043145.
matches multiple genes
uterus .b 3389 to 3943 1 to 560     also hits gene FAHD2A 560/562
(99 %)
12 diff
(97.9 %id)
BG315149   .b 3402 to 3602 1 to 202       202/202
(100 %)
2 diff
(99.1 %id)
AW082728 pooled .b 3412 to 3949 540 to 3   tiling clone,   538/540
(99 %)
0 diff
(100 %id)
AW838390 leiomios .b 3420 to 3816 449 to 52       398/449
(88 %)
0 diff
(100 %id)
BE044419 pooled .b 3431 to 3945 517 to 3       515/517
(99 %)
0 diff
(100 %id)
DB331299   .b 3431 to 3944 517 to 5       513/520
(98 %)
0 diff
(100 %id)
AI417373 anaplastic oligodendroglioma, brain .b 3456 to 3949 494 to 1       494/494
(100 %)
0 diff
(100 %id)
BM824384 Ascites, stomach .b 3491 to 3768 1 to 278       278/278
(100 %)
4 diff
(98.6 %id)
AI147614 uterus .b 3498 to 3945 450 to 4       447/450
(99 %)
0 diff
(100 %id)
AA632403 breast .b 3507 to 3943 443 to 7       437/443
(98 %)
0 diff
(100 %id)
AA631602 breast .b 3508 to 3948 442 to 1       442/442
(100 %)
1 diff
(99.8 %id)
AI937606 anaplastic oligodendroglioma, brain .b 3513 to 3945 433 to 1       433/433
(100 %)
1 diff
(99.8 %id)
AA642586 normal prostate, Prostate .b 3537 to 3904 368 to 1       368/368
(100 %)
0 diff
(100 %id)
AI969211 lung, two pooled squamous cell carcinomas .b 3537 to 3944 408 to 1       408/408
(100 %)
0 diff
(100 %id)
AI864878 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 3546 to 3948 414 to 12   AAA   403/405
(99 %)
0 diff
(100 %id)
AI081135 senescent fibroblast .b 3549 to 3949 407 to 7       401/407
(98 %)
0 diff
(100 %id)
AA885000 pooled .b 3555 to 3943 389 to 1       389/389
(100 %)
0 diff
(100 %id)
AA926984 pooled .b 3575 to 3945 373 to 3       371/373
(99 %)
0 diff
(100 %id)
BG315359   .b 3584 to 3879 295 to 1       295/295
(100 %)
3 diff
(99.0 %id)
AW079405 colon, moderately differentiated adenocarcinoma .b 3647 to 3944 298 to 1       298/298
(100 %)
0 diff
(100 %id)
BM725183 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3654 to 3944 1 to 291   fully sequenced, AAA   291/291
(100 %)
2 diff
(99.4 %id)
AA927393 pooled .b 3657 to 3831 175 to 1       175/175
(100 %)
0 diff
(100 %id)
AW628858 pooled .b 3672 to 3918 247 to 1       247/247
(100 %)
3 diff
(98.8 %id)
BM678197 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3690 to 3944 271 to 17   fully sequenced, AAA   255/255
(100 %)
0 diff
(100 %id)
AA973001 pooled .b 3691 to 3949 261 to 3       259/261
(99 %)
0 diff
(100 %id)
AI752966 bone marrow stroma .b 3771 to 3942 190 to 19   AAA   172/172
(100 %)
0 diff
(100 %id)
AA040877.
matches multiple genes
uterus .b 3788 to 3945 158 to 2     also hits gene MAP2K1 157/158
(99 %)
0 diff
(100 %id)
CX166157 human embryonic stem cells differentiated toan early endodermal cell type .c 1 to 787 1 to 787 exact tiling clone,   787/787
(100 %)
2 diff
(99.8 %id)
BG774313 choriocarcinoma, placenta .d-u 1 to 702 1 to 701 exact tiling clone,   701/701
(100 %)
3 diff
(99.6 %id)
CB241622 Human Lung Epithelial cells, lung .d-u 286 to 981 713 to 19   tiling clone, AAA   695/695
(100 %)
4 diff
(99.5 %id)
DA633499 Kidney .e 1 to 576 2 to 577 exact tiling clone, capped   576/576
(100 %)
1 diff
(99.9 %id)
CR591717 Placenta Cot 25-normalized .e 88 to 1566 1 to 1479 exact tiling clone,   1479/1479
(100 %)
0 diff
(100 %id)
BX359224 Placenta Cot 25-normalized .e 88 to 1000 1 to 914 S45X A46S R97M A98G W99V ...     914/1075
(85 %)
7 diff
(99.4 %id)
BX359223 Placenta Cot 25-normalized .e 992 to 1566 578 to 1       578/1067
(54 %)
12 diff
(98.9 %id)
DA454091 tongue, tumor tissue .f 1 to 569 2 to 570 exact tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
BC013371 Ovary, adenocarcinoma .g 1 to 2028 1 to 2028 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 2028/2028
(100 %)
2 diff
(100.0 %id)
BE747080 adenocarcinoma cell line, ovary .g 21 to 524 1 to 499   available from MGC,   499/500
(99 %)
8 diff
(98.4 %id)
BC021580 Placenta, choriocarcinoma Gene NAIF1, variant not shown       available from MGC, AAA This clone was ignored    
BX103094 heart Gene NAIF1, variant not shown         Suspected internal deletion, this clone was ignored    
W69444 heart Gene NAIF1, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
W69527 heart Gene NAIF1, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
AA393124   Gene NAIF1, variant not shown         This clone was ignored    
AA411902   Gene NAIF1, variant not shown         This clone was ignored    
DA631452 Kidney Gene NAIF1, variant not shown       capped This clone was ignored    
DA927988 small intestine Gene NAIF1, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC