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Gene C9orf68TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
71 supporting clones for gene C9orf68 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_43963225   .a 1 to 890 69 to 964   tiling clone,   896/1239
(72 %)
28 diff
(97.8 %id)
BI520328 brain, medulla .a 2 to 890 1 to 895   tiling clone,   895/1170
(76 %)
22 diff
(98.2 %id)
TI_149297424   .a 605 to 1407 840 to 47   tiling clone,   794/989
(80 %)
10 diff
(99.0 %id)
BM982488 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 758 to 1407 670 to 22   tiling clone,   649/670
(96 %)
0 diff
(100 %id)
BQ016484 lung, Metastatic Chondrosarcoma .a 814 to 1410 614 to 20   tiling clone, AAA   597/596
(100 %)
15 diff
(97.5 %id)
AA936404 pooled .a 945 to 1414 478 to 9       470/478
(98 %)
2 diff
(99.6 %id)
TI_1948092992   .b 1 to 803 130 to 932   tiling clone, fully sequenced,   803/932
(86 %)
15 diff
(98.4 %id)
TI_1948093144   .b 1 to 803 127 to 928   tiling clone, fully sequenced,   802/928
(86 %)
15 diff
(98.4 %id)
TI_1948093311   .b 1 to 460 128 to 587   fully sequenced,   460/587
(78 %)
6 diff
(99.0 %id)
TI_1948093457   .b 250 to 1196 1065 to 103   tiling clone,   963/1371
(70 %)
39 diff
(97.2 %id)
TI_1948093312   .b 399 to 1196 901 to 105   tiling clone, fully sequenced,   797/901
(88 %)
4 diff
(99.6 %id)
TI_1948092993   .b 742 to 1196 556 to 102   tiling clone, fully sequenced,   455/556
(81 %)
0 diff
(100 %id)
TI_1948093145   .b 742 to 1196 563 to 109   fully sequenced,   455/563
(80 %)
0 diff
(100 %id)
BP215549 corpus callosum .c 1 to 582 1 to 582   tiling clone,   582/582
(100 %)
3 diff
(99.5 %id)
BC034293 Brain, adult medulla .c 34 to 1774 1 to 1741 K171R R243G tiling clone, available from MGC, AAA   1741/1741
(100 %)
7 diff
(99.6 %id)
BI827091 brain, medulla .c 34 to 798 1 to 763       763/763
(100 %)
4 diff
(99.5 %id)
TI_57173191   .c 34 to 798 29 to 791       763/791
(96 %)
8 diff
(99.0 %id)
BP369387 testis .c 48 to 625 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
BP339448 Spleen .c 76 to 433 1 to 358       358/567
(63 %)
5 diff
(99.2 %id)
CV030335 mixed .c 207 to 672 1 to 467       467/467
(100 %)
14 diff
(97.1 %id)
BQ340424 nervous_normal .c 1131 to 1338 210 to 3       208/210
(99 %)
1 diff
(99.6 %id)
NM_001039395.3   .d 1 to 3737 2 to 3738 exact RefSeq, AAA   3738/3738
(100 %)
0 diff
(100 %id)
AK295831 hippocampus .d 8 to 1420 1 to 1413 exact tiling clone,   1413/1413
(100 %)
0 diff
(100 %id)
DC335435 hippocampus .d 8 to 599 1 to 592       592/592
(100 %)
0 diff
(100 %id)
DB527102 testis .d 994 to 1447 2 to 454   tiling clone, Submitted on the opposite strand 453/455
(99 %)
17 diff
(96.3 %id)
AA609149   .d 1055 to 1451 402 to 6   tiling clone,   397/402
(98 %)
0 diff
(100 %id)
DA039783 bladder .d 1440 to 2008 2 to 570   tiling clone, capped   569/569
(100 %)
2 diff
(99.7 %id)
BX415768 thymus .d 1488 to 2195 1 to 705       705/705
(100 %)
21 diff
(97.1 %id)
CD359593 testis .d 1630 to 2381 1 to 756   tiling clone,   756/811
(93 %)
14 diff
(98.3 %id)
AW897720 nervous_normal .d 1858 to 2064 1 to 205       205/212
(96 %)
11 diff
(94.9 %id)
AW897726 nervous_normal .d 1858 to 2064 1 to 207       207/214
(96 %)
11 diff
(94.9 %id)
AW897727 nervous_normal .d 1858 to 2064 1 to 206       206/213
(96 %)
9 diff
(95.8 %id)
CD300369 testis .d 1977 to 2574 5 to 611   tiling clone,   607/1110
(54 %)
18 diff
(98.4 %id)
Z42490 brain, total brain .d 2583 to 2821 1 to 222   tiling clone,   222/225
(98 %)
19 diff
(91.6 %id)
R24871 whole brain .d 2584 to 2958 1 to 386       386/393
(98 %)
21 diff
(94.7 %id)
H05175 whole brain .d 2584 to 3048 1 to 484   tiling clone,   484/486
(99 %)
30 diff
(93.9 %id)
H15395 whole brain .d 2584 to 3061 1 to 485   tiling clone,   485/491
(98 %)
12 diff
(97.6 %id)
BX111437 whole brain .d 3210 to 3743 548 to 15   tiling clone, AAA   534/534
(100 %)
0 diff
(100 %id)
DB295926 bladder .d 3215 to 3743 529 to 1       529/529
(100 %)
2 diff
(99.7 %id)
H15396 whole brain .d 3333 to 3741 419 to 1       419/421
(99 %)
14 diff
(96.7 %id)
AI445341 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 3344 to 3743 394 to 1       394/394
(100 %)
8 diff
(98.0 %id)
AI680014 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 3359 to 3745 394 to 8   tiling clone,   387/394
(98 %)
0 diff
(100 %id)
H05132 whole brain .d 3483 to 3743 280 to 20   AAA   261/261
(100 %)
1 diff
(99.7 %id)
Z38684 brain, total brain .d 3558 to 3737 180 to 1       180/180
(100 %)
0 diff
(100 %id)
AK301790 testis .e 1 to 1854 1 to 1854 G213C tiling clone,   1854/1854
(100 %)
3 diff
(99.9 %id)
DC395298 testis .e 1 to 544 1 to 544       544/544
(100 %)
0 diff
(100 %id)
DA316807 hippocampus .e 102 to 645 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
AK000920 whole embryo, mainly head .f 1 to 2436 2 to 2437 exact tiling clone, available from FLJ,   2437/2437
(100 %)
3 diff
(99.9 %id)
AU117437 whole embryo, mainly head .f 1 to 868 2 to 863 exact capped   862/876
(98 %)
13 diff
(98.6 %id)
BG203244   .f 640 to 988 359 to 11   tiling clone, Submitted on the opposite strand 349/359
(97 %)
0 diff
(100 %id)
FN102746 breast carcinoma .f 1321 to 1431 1 to 112       112/112
(100 %)
1 diff
(99.2 %id)
AU144268 whole embryo, mainly head .f 1997 to 2436 438 to 1       438/539
(81 %)
4 diff
(99.3 %id)
BX100219   .g 1 to 641 1 to 641 exact tiling clone,   641/641
(100 %)
0 diff
(100 %id)
BC036349 Brain, adult medulla .h 1 to 1834 1 to 1834 exact tiling clone, available from MGC, AAA   1834/1834
(100 %)
2 diff
(99.9 %id)
BI826180 brain, medulla .h 1 to 731 1 to 731 exact available from MGC,   731/731
(100 %)
0 diff
(100 %id)
TI_57173659   .h 1 to 731 35 to 765 exact     731/765
(95 %)
6 diff
(99.3 %id)
CV030201 mixed .h 99 to 492 1 to 394       394/397
(99 %)
30 diff
(92.5 %id)
BX649030 human retina .i 1 to 4073 1 to 4073 exact tiling clone, available from DKFZ,   4073/4073
(100 %)
11 diff
(99.8 %id)
AL603321 human skeletal muscle .i 1132 to 1765 1 to 638       638/644
(99 %)
11 diff
(98.3 %id)
BE972255 testis .j 1 to 433 1 to 433 L19S M20* tiling clone,   433/436
(99 %)
7 diff
(98.4 %id)
BP394968 pancreatic islet .k-u 1 to 485 485 to 1   tiling clone,   485/485
(100 %)
0 diff
(100 %id)
BF475287 carcinoid, lung .k-u 50 to 461 411 to 1       411/417
(98 %)
3 diff
(99.3 %id)
BE002919 breast_normal .k-u 157 to 367 1 to 211       211/211
(100 %)
2 diff
(99.1 %id)
DB070963 testis .k-u 463 to 1011 2 to 550 exact tiling clone, capped   549/549
(100 %)
1 diff
(99.9 %id)
EC505890 Prostate .k-u 495 to 579 1 to 84       84/95
(88 %)
2 diff
(97.9 %id)
EC578936 Prostate .k-u 495 to 594 1 to 100       100/100
(100 %)
0 diff
(100 %id)
BE147496 head_neck .l-u 1 to 553 5 to 576 G13W tiling clone,   572/592
(96 %)
6 diff
(99.0 %id)
BF194854 Kidney .m 1 to 511 512 to 3 exact tiling clone,   510/512
(99 %)
0 diff
(100 %id)
AW611804 Kidney .m 97 to 513 418 to 2   tiling clone,   417/418
(99 %)
0 diff
(100 %id)
AI695191 Kidney .m 161 to 513 354 to 1       354/354
(100 %)
1 diff
(99.8 %id)
DA926064 small intestine .n 1 to 565 2 to 566 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
AI354943 lung .o 1 to 389 389 to 1 exact tiling clone,   389/389
(100 %)
0 diff
(100 %id)
DB209899 trachea .p 1 to 470 3 to 472 exact tiling clone, capped   471/471
(100 %)
0 diff
(100 %id)
DA773773 brain .p 34 to 611 2 to 579 exact tiling clone, to resequence, capped   578/578
(100 %)
0 diff
(100 %id)
DB325879 brain .p 1552 to 1831 280 to 1   tiling clone, to resequence,   280/280
(100 %)
0 diff
(100 %id)
DA234263 brain .q 1 to 588 2 to 588 exact tiling clone, capped   587/587
(100 %)
1 diff
(99.9 %id)
AI806217 pooled Gene C9orf68, variant not shown       AAA      
AW135596   Gene C9orf68, variant not shown       AAA This clone was ignored    
AW246362 lung, small cell carcinoma Gene C9orf68, variant not shown         Suspected internal deletion, this clone was ignored    
AW246578 lung, small cell carcinoma Gene C9orf68, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BP370227 testis Gene C9orf68, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l-u, .m, .n, .o, .p, .q Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C