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Gene TTC39BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
128 supporting clones for gene TTC39B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_152574.2   .a 1 to 3259 2 to 3260 exact RefSeq, AAA   3260/3260
(100 %)
0 diff
(100 %id)
AK091187 tongue, tumor tissue .a 114 to 2541 1 to 2428   tiling clone, available from FLJ,   2428/2428
(100 %)
3 diff
(99.9 %id)
AX746836   .a 114 to 2541 1 to 2428       2428/2428
(100 %)
3 diff
(99.9 %id)
NM_001168339.1   .b 1 to 3253 2 to 3254 exact RefSeq, AAA   3254/3254
(100 %)
0 diff
(100 %id)
BC142985 Clones donated by RIKEN .b 21 to 3253 1 to 3234 I418V F665L tiling clone, AAA   3234/3234
(100 %)
9 diff
(99.8 %id)
DB505134 hypothalamus .b 21 to 676 1 to 656       656/656
(100 %)
4 diff
(99.4 %id)
NM_001168340.1   .c 1 to 3220 2 to 3221 exact RefSeq, AAA   3221/3221
(100 %)
0 diff
(100 %id)
DB087562 testis .c 1 to 570 2 to 571   tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
DB087567 testis .c 1 to 565 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BX646444   .c 8 to 498 1 to 490       490/490
(100 %)
5 diff
(99.0 %id)
BX646446   .c 16 to 499 7 to 490       484/490
(98 %)
6 diff
(98.8 %id)
AK298998   .c 28 to 2146 1 to 2119 C7Y S329F I407V tiling clone,   2119/2119
(100 %)
3 diff
(99.9 %id)
DA715677   .c 29 to 573 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA438710 tongue, tumor tissue .c 115 to 702 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA650141   .c 144 to 681 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
BP354020   .c 144 to 733 1 to 590       590/592
(99 %)
6 diff
(99.0 %id)
DA438556 tongue, tumor tissue .c 145 to 716 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA180583 amygdala .c 146 to 716 2 to 576   capped   572/575
(99 %)
7 diff
(98.8 %id)
DB136022 thymus .c 146 to 684 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
DA948457 Spleen .c 150 to 699 2 to 554   capped   553/553
(100 %)
3 diff
(99.5 %id)
CD637887   .c 154 to 852 1 to 701       701/702
(99 %)
11 diff
(98.5 %id)
DA588991 lung .c 174 to 747 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DR004379 placenta .c 213 to 884 1 to 670       670/670
(100 %)
5 diff
(99.3 %id)
BX492232   .c 220 to 593 1 to 381       381/381
(100 %)
11 diff
(97.2 %id)
DB443222 testis .c 305 to 602 181 to 476       301/477
(63 %)
11 diff
(97.7 %id)
CD637888   .c 444 to 1205 786 to 16   tiling clone,   771/786
(98 %)
11 diff
(98.7 %id)
DB313542 tongue, tumor tissue .c 1969 to 2502 534 to 1   tiling clone,   534/534
(100 %)
2 diff
(99.7 %id)
NM_001168341.1   .d 1 to 3052 2 to 3053 exact RefSeq, AAA   3053/3053
(100 %)
0 diff
(100 %id)
BX646471   .d 16 to 269 7 to 260   tiling clone,   254/260
(97 %)
6 diff
(97.7 %id)
AK298581   .d 145 to 2220 1 to 2076   tiling clone,   2076/2076
(100 %)
3 diff
(99.9 %id)
DA659403   .d 146 to 732 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
FN171106 breast carcinoma .d 149 to 231 83 to 1     Submitted on the opposite strand 83/83
(100 %)
0 diff
(100 %id)
DA915410   .d 754 to 1309 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DN993015 brain, whole brain .d 846 to 1486 1 to 641       641/641
(100 %)
7 diff
(99.0 %id)
CK903976 Islets of Langerhans, Pancreas .d 956 to 1550 1 to 595   tiling clone,   595/595
(100 %)
1 diff
(99.9 %id)
BM053065 Islets of Langerhans, Pancreas .d 971 to 1575 1 to 605       605/605
(100 %)
2 diff
(99.7 %id)
AA402576   .d 1027 to 1552 1 to 520       520/572
(90 %)
14 diff
(97.6 %id)
BX094163   .d 1028 to 1770 1 to 744       744/751
(99 %)
3 diff
(99.7 %id)
AA318701 Spleen .d 1241 to 1523 1 to 283       283/283
(100 %)
2 diff
(99.3 %id)
BG678603 skin, squamous cell carcinoma .d 1329 to 1764 1 to 456       456/505
(90 %)
30 diff
(94.1 %id)
CA438701 lung, Metastatic Chondrosarcoma .d 1380 to 1986 618 to 11   AAA   608/608
(100 %)
3 diff
(99.6 %id)
AA403213   .d 1553 to 1701 11 to 159   fully sequenced,   150/160
(93 %)
6 diff
(96.3 %id)
DB508105 testis .d 1558 to 1974 1 to 428     Submitted on the opposite strand 425/428
(99 %)
17 diff
(96.1 %id)
CR747064 testis .d 1568 to 1986 447 to 29   AAA Submitted on the opposite strand 419/419
(100 %)
0 diff
(100 %id)
AA620302   .d 1582 to 1787 205 to 1       205/205
(100 %)
7 diff
(96.6 %id)
DA415877 thalamus .d 1640 to 2214 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
AA398910   .d 1640 to 1990 354 to 4   fully sequenced,   351/354
(99 %)
0 diff
(100 %id)
Z24976 leg muscle, skeletal muscle .d 1665 to 2008 345 to 2       344/345
(99 %)
0 diff
(100 %id)
CK903975 Islets of Langerhans, Pancreas .d 1756 to 2341 587 to 2       586/587
(99 %)
0 diff
(100 %id)
CA310821 Human Lung Epithelial cells, lung .d 1757 to 2503 765 to 19   AAA   747/747
(100 %)
0 diff
(100 %id)
CA311808 Human Lung Epithelial cells, lung .d 1764 to 2503 758 to 19   AAA   740/740
(100 %)
2 diff
(99.8 %id)
BM052771 Islets of Langerhans, Pancreas .d 1765 to 2341 578 to 2       577/578
(99 %)
1 diff
(99.9 %id)
DB526951 testis .d 1918 to 2329 1 to 411   AAA Submitted on the opposite strand 411/411
(100 %)
5 diff
(98.8 %id)
CB121022 Liver .d 1939 to 2303 1 to 365       365/365
(100 %)
0 diff
(100 %id)
BF056282 pooled germ cell tumors .d 1985 to 2505 522 to 2   tiling clone,   521/522
(99 %)
0 diff
(100 %id)
AI653293 pooled germ cell tumors .d 1986 to 2505 522 to 2       521/522
(99 %)
0 diff
(100 %id)
BE504636 pooled germ cell tumors .d 1986 to 2505 521 to 2       520/521
(99 %)
0 diff
(100 %id)
BE710021 head_neck .d 2024 to 2495 472 to 3       470/472
(99 %)
0 diff
(100 %id)
EC470803 Prostate .d 2050 to 2159 1 to 109       109/109
(100 %)
1 diff
(99.1 %id)
AW025298 Kidney .d 2391 to 2967 579 to 1       579/579
(100 %)
11 diff
(98.2 %id)
AI473911 Kidney .d 2505 to 2967 463 to 1   tiling clone,   463/463
(100 %)
1 diff
(99.8 %id)
BG165633 hypernephroma, cell line, Kidney .d 2525 to 3153 1 to 630   tiling clone,   630/978
(64 %)
21 diff
(97.9 %id)
BX105862 pooled germ cell tumors .d 2558 to 2987 1 to 431   AAA   431/431
(100 %)
1 diff
(99.8 %id)
DB576404 hypothalamus .d 2591 to 3052 1 to 463   tiling clone, Submitted on the opposite strand 463/463
(100 %)
1 diff
(99.8 %id)
AI672546 pooled germ cell tumors .d 2591 to 2988 399 to 1       399/399
(100 %)
1 diff
(99.8 %id)
DB043009 testis .e 1 to 558 2 to 561   tiling clone, capped   560/560
(100 %)
3 diff
(99.5 %id)
BC042417 Brain, adult medulla .e 10 to 2062 1 to 2053 I323V tiling clone, available from MGC, AAA   2053/2053
(100 %)
1 diff
(100.0 %id)
TI_57173177   .e 11 to 673 25 to 682       658/693
(94 %)
10 diff
(98.6 %id)
BI827065 brain, medulla .e 13 to 673 1 to 657   available from MGC,   657/668
(98 %)
10 diff
(98.6 %id)
AK310482 testis .f 1 to 1880 2 to 1881 I420V tiling clone,   1881/1881
(100 %)
1 diff
(100.0 %id)
NM_001168342.1   .g 1 to 3135 1 to 3135 exact RefSeq, AAA   3135/3135
(100 %)
0 diff
(100 %id)
DA390238 thalamus .g 39 to 609 8 to 578   tiling clone, capped   571/574
(99 %)
6 diff
(99.0 %id)
AK301427 synovial membrane tissue from rheumatoidarthritis .g 85 to 2034 1 to 1950 I255V tiling clone,   1950/1950
(100 %)
1 diff
(100.0 %id)
DA985306 synovial membrane tissue from rheumatioidarthritis .g 86 to 636 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
AK093459 testis .h 1 to 2242 2 to 2238 I255V K300N A301L T302C Y303V ... tiling clone, available from FLJ,   2242/2238
(100 %)
3 diff
(99.9 %id)
AX748140   .h 1 to 2242 2 to 2238 I255V K300N A301L T302C Y303V ...     2242/2238
(100 %)
3 diff
(99.9 %id)
DB038624 testis .h 1 to 570 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
CU444294 epidermis .h 412 to 893 486 to 6     Submitted on the opposite strand 481/513
(93 %)
0 diff
(100 %id)
CU445797 epidermis .h 412 to 893 487 to 7     Submitted on the opposite strand 481/514
(93 %)
0 diff
(100 %id)
DB337648 testis .h 1714 to 2242 531 to 1       531/531
(100 %)
2 diff
(99.7 %id)
AK310271 testis .i 1 to 1165 2 to 1166   tiling clone,   1166/1166
(100 %)
1 diff
(100.0 %id)
DB036199 testis .i 1 to 547 2 to 548   tiling clone, capped   547/547
(100 %)
1 diff
(99.9 %id)
DB038407 testis .i 1 to 573 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB461542 testis .i 20 to 508 1 to 490       490/490
(100 %)
7 diff
(98.6 %id)
BG210586   .i 892 to 1667 789 to 14   tiling clone, Submitted on the opposite strand 776/848
(91 %)
20 diff
(97.7 %id)
AA284311 germinal center B cell .i 998 to 1412 8 to 423   fully sequenced,   418/425
(98 %)
15 diff
(96.5 %id)
AA904681 pooled .i 1173 to 1667 494 to 1   tiling clone,   494/494
(100 %)
7 diff
(98.6 %id)
AA292721 germinal center B cell .i 1351 to 1664 314 to 1   fully sequenced,   314/314
(100 %)
0 diff
(100 %id)
BC038592 Blood, adult leukocytes .j 1 to 1326 44 to 1369 exact tiling clone, available from MGC, AAA   1326/1369
(96 %)
6 diff
(99.6 %id)
BI909163 leukocyte .j 1 to 663 44 to 705   available from MGC,   662/705
(93 %)
7 diff
(99.1 %id)
TI_57236728   .j 1 to 663 104 to 765       662/765
(86 %)
7 diff
(99.1 %id)
TI_1948229733   .j 270 to 808 133 to 671       539/562
(95 %)
8 diff
(98.6 %id)
TI_1948229897   .j 270 to 698 133 to 561   fully sequenced,   429/451
(95 %)
6 diff
(98.7 %id)
TI_1948230050   .j 270 to 879 132 to 743 T2D R170K N171E N172Q Y173L ... fully sequenced,   610/632
(96 %)
12 diff
(98.2 %id)
TI_1948230205   .j 270 to 878 132 to 742 Q156P E158G I159N D160* fully sequenced,   611/742
(82 %)
12 diff
(98.4 %id)
EL737177 mixed .j 276 to 872 1 to 596       596/638
(93 %)
8 diff
(98.8 %id)
TI_1948229898   .j 637 to 878 363 to 122   fully sequenced,   242/265
(91 %)
0 diff
(100 %id)
TI_1948230051   .j 637 to 878 360 to 119   fully sequenced,   242/265
(91 %)
0 diff
(100 %id)
TI_1948230206   .j 637 to 878 361 to 119   fully sequenced,   243/266
(91 %)
1 diff
(99.7 %id)
AK301185 Spleen .k 1 to 927 1 to 927 exact tiling clone,   927/927
(100 %)
0 diff
(100 %id)
BI461860 testis .l 1 to 569 1 to 569 V2G tiling clone,   569/903
(63 %)
5 diff
(99.5 %id)
BI562431 testis .m 1 to 709 9 to 719 S97L A98P M99* tiling clone,   709/792
(89 %)
10 diff
(98.8 %id)
TI_44350318   .m 1 to 709 132 to 842 S97L A98P M99*     709/915
(77 %)
13 diff
(98.6 %id)
DB078588 testis .n 1 to 572 2 to 573 exact tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
DA397699 thalamus .o 1 to 604 2 to 605 exact tiling clone, capped   604/604
(100 %)
0 diff
(100 %id)
DT217817 brain .p 1 to 672 1 to 672 exact tiling clone,   672/672
(100 %)
2 diff
(99.8 %id)
DA846967 placenta .q-u 1 to 369 2 to 372 D13G E14R V15G R16T S17I ... tiling clone, capped   371/371
(100 %)
2 diff
(99.5 %id)
BF304575 muscle, rhabdomyosarcoma .q-u 88 to 838 1 to 752 exact tiling clone,   752/1060
(70 %)
28 diff
(97.4 %id)
BF307803 muscle, rhabdomyosarcoma .q-u 88 to 848 1 to 736 R7E A8R E9S L10W E11K ... tiling clone,   736/867
(84 %)
42 diff
(95.2 %id)
BI028779 marrow .q-u 908 to 1120 1 to 211   tiling clone,   211/219
(96 %)
9 diff
(95.9 %id)
BF683658 leiomyosarcoma cell line, uterus .q-u 1110 to 1417 359 to 673   tiling clone,   649/681
(95 %)
52 diff
(92.4 %id)
BI860659 breast, mammary adenocarcinoma, cell line .r 1 to 725 1 to 733 exact tiling clone,   733/751
(97 %)
13 diff
(98.3 %id)
TI_57189544   .r 1 to 725 13 to 745 exact     733/1054
(69 %)
19 diff
(98.2 %id)
CB528632 Aveolar Macrophage, lung .r 60 to 724 683 to 19   tiling clone, AAA   665/665
(100 %)
1 diff
(99.9 %id)
FN074080 breast carcinoma .r 163 to 258 96 to 1     Submitted on the opposite strand 96/96
(100 %)
1 diff
(99.0 %id)
BX473853   .r 295 to 938 1 to 644   tiling clone,   644/644
(100 %)
4 diff
(99.4 %id)
AW052033 Kidney .r 314 to 774 476 to 16   AAA   461/461
(100 %)
3 diff
(99.4 %id)
CK904345 Islets of Langerhans, Pancreas .r 349 to 728 1 to 380   AAA   380/380
(100 %)
1 diff
(99.8 %id)
BM021533 Islets of Langerhans, Pancreas .r 365 to 728 1 to 364   AAA   364/364
(100 %)
1 diff
(99.8 %id)
FN053933 breast carcinoma .r 422 to 503 80 to 1     Submitted on the opposite strand 80/82
(97 %)
2 diff
(97.6 %id)
BX115990 Prostate .r 493 to 724 1 to 232   AAA   232/232
(100 %)
0 diff
(100 %id)
AI418767 Prostate .r 525 to 724 200 to 1       200/200
(100 %)
0 diff
(100 %id)
BM999329 Fibrosarcoma .s-u 1 to 810 823 to 19 L26W tiling clone, AAA   805/806
(99 %)
7 diff
(99.2 %id)
AW854097 colon .t-u 1 to 682 8 to 685 exact tiling clone,   678/686
(98 %)
8 diff
(98.9 %id)
BM929879 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .u 1 to 608 1 to 610 exact tiling clone, fully sequenced, AAA   610/610
(100 %)
5 diff
(99.2 %id)
BM684313 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .u 366 to 608 261 to 19   fully sequenced, AAA   243/243
(100 %)
0 diff
(100 %id)
DB027712 testis .va 1 to 565 2 to 566 exact tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DB146859 thymus .vb 1 to 194 2 to 195   tiling clone, capped   194/194
(100 %)
1 diff
(99.5 %id)
DB148898 thymus .vb 16 to 507 2 to 493 exact tiling clone, capped   492/492
(100 %)
3 diff
(99.4 %id)
BE222084 carcinoid, lung .vc-u 1 to 392 392 to 1 exact tiling clone,   392/392
(100 %)
0 diff
(100 %id)
BE502860 carcinoid, lung .vc-u 2 to 392 391 to 1 exact     391/391
(100 %)
0 diff
(100 %id)
BF437886 carcinoid, lung .vc-u 3 to 396 394 to 1       394/394
(100 %)
1 diff
(99.8 %id)
FN096511 breast carcinoma .vc-u 80 to 171 91 to 1     Submitted on the opposite strand 91/93
(97 %)
1 diff
(99.0 %id)
BF115722 carcinoid, lung .vc-u 187 to 396 210 to 1   tiling clone,   210/210
(100 %)
0 diff
(100 %id)
AW001030 Kidney Gene TTC39B, variant not shown         This clone was ignored    
BC070139 Blood vessels- blood vessel, aorta, basilarartery. Gene TTC39B, variant not shown       available from MGC, AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q-u, .r, .s-u, .t-u, .u, .va, .vb, .vc-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC