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Gene C9orf41TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
130 supporting clones for gene C9orf41 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX332562 Neuroblastoma Cot 25-normalized .a 1 to 1029 1 to 1006   tiling clone,   1006/1034
(97 %)
34 diff
(96.8 %id)
BC034033 Brain, primitive neuroectodermal .a 23 to 2213 1 to 2191   tiling clone, available from MGC, AAA   2191/2191
(100 %)
0 diff
(100 %id)
NM_152420.1   .a 23 to 2213 1 to 2191   RefSeq, AAA   2191/2191
(100 %)
0 diff
(100 %id)
BE899104 adenocarcinoma cell line, ovary .a 54 to 818 1 to 757       757/833
(90 %)
21 diff
(97.5 %id)
CX784041 human embryonic stem cells .a 138 to 801 1 to 664       664/664
(100 %)
0 diff
(100 %id)
EL735407 mixed .a 176 to 797 1 to 621       621/621
(100 %)
7 diff
(98.9 %id)
TI_1948222262   .a 176 to 1051 128 to 1011       884/1310
(67 %)
35 diff
(97.4 %id)
TI_1948222562   .a 176 to 1084 129 to 1041       913/1270
(71 %)
25 diff
(98.1 %id)
TI_1948222864   .a 176 to 1043 131 to 1004       874/1327
(65 %)
34 diff
(97.5 %id)
TI_1948223171   .a 176 to 894 127 to 848       722/1459
(49 %)
29 diff
(98.1 %id)
TI_1948223172   .a 176 to 1088 134 to 1055       922/1391
(66 %)
30 diff
(97.9 %id)
BX647386 human colon endothel primary cell culture .a 218 to 4154 1 to 3937   tiling clone, available from DKFZ, AAA   3937/3937
(100 %)
3 diff
(100.0 %id)
CN348096 embryonic stem cells, cell lines H1, H7, andH9 .a 284 to 960 1 to 677       677/677
(100 %)
0 diff
(100 %id)
TI_1948222563   .a 400 to 1411 1119 to 116       1004/1348
(74 %)
33 diff
(97.6 %id)
BI825460 brain, medulla .a 424 to 1317 1 to 908       908/943
(96 %)
52 diff
(94.5 %id)
BQ722426 sympathetic trunk .a 424 to 1372 1 to 946       946/954
(99 %)
13 diff
(98.7 %id)
TI_57170350   .a 424 to 1317 64 to 971       908/1006
(90 %)
55 diff
(94.6 %id)
BX538061 human uterus endothel primary cell culture .a 470 to 4149 1 to 3678   tiling clone, available from DKFZ, AAA   3678/3678
(100 %)
4 diff
(99.9 %id)
DA756182   .a 497 to 1096 2 to 602   capped   601/601
(100 %)
1 diff
(99.9 %id)
BP290493 lung .a 529 to 1097 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
TI_1948222263   .a 551 to 1411 973 to 113       861/1415
(60 %)
12 diff
(99.2 %id)
AK098661 testis .a 560 to 1636 1 to 1077   available from FLJ,   1077/1077
(100 %)
0 diff
(100 %id)
BP370781 testis .a 560 to 1133 1 to 573       573/573
(100 %)
8 diff
(98.7 %id)
TI_1948223174   .a 628 to 1411 905 to 117       789/1276
(61 %)
18 diff
(98.6 %id)
TI_1948222264   .a 632 to 1411 911 to 116       794/1337
(59 %)
40 diff
(97.1 %id)
CN348095 embryonic stem cells, cell lines H1, H7, andH9 .a 671 to 1437 1 to 768       768/768
(100 %)
3 diff
(99.7 %id)
DA023033   .a 728 to 1290 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BX368597 Neuroblastoma Cot 25-normalized .a 764 to 1596 1 to 832       832/832
(100 %)
6 diff
(99.3 %id)
TI_1948222564   .a 765 to 1411 800 to 150   AAA   651/1286
(50 %)
31 diff
(97.6 %id)
TI_1948222865   .a 765 to 1411 775 to 126       650/1300
(50 %)
14 diff
(99.0 %id)
BF670130 brain, primitive neuroectoderm .a 817 to 1529 1 to 706       706/842
(83 %)
28 diff
(96.7 %id)
AW503912 lymph .a 821 to 1397 8 to 585       578/585
(98 %)
7 diff
(98.9 %id)
TI_154159979   .a 821 to 1479 91 to 746       656/659
(99 %)
9 diff
(98.7 %id)
BX281771 leiomyosarcoma, uterus .a 967 to 1449 1 to 483       483/483
(100 %)
0 diff
(100 %id)
BX481773   .a 972 to 1645 1 to 676       676/676
(100 %)
3 diff
(99.6 %id)
BM477824 leiomyosarcoma, uterus .a 974 to 1868 8 to 913       906/1123
(80 %)
47 diff
(95.9 %id)
CU456597 epidermis .a 1013 to 1376 373 to 9     Submitted on the opposite strand 365/374
(97 %)
3 diff
(99.2 %id)
BI596493 brain, hypothalamus .a 1256 to 1982 1 to 716       716/717
(99 %)
16 diff
(97.8 %id)
BI668541 brain, hypothalamus .a 1256 to 2049 1 to 793       793/793
(100 %)
26 diff
(96.8 %id)
TI_45209352   .a 1261 to 1982 126 to 836       711/837
(84 %)
18 diff
(97.9 %id)
TI_44344712   .a 1261 to 2049 94 to 881       788/881
(89 %)
28 diff
(96.9 %id)
BF830627 head_neck .a 1272 to 1495 228 to 9     Submitted on the opposite strand 220/233
(94 %)
0 diff
(100 %id)
BQ376001 testis_normal .a 1279 to 1643 1 to 363       363/363
(100 %)
8 diff
(97.8 %id)
BG998615 head_neck .a 1285 to 1717 433 to 1       433/433
(100 %)
0 diff
(100 %id)
DA881357   .a 1525 to 2081 2 to 557   capped   556/556
(100 %)
3 diff
(99.5 %id)
BG493795 lung, mucoepidermoid carcinoma .a 1823 to 2535 1 to 728       728/732
(99 %)
74 diff
(89.9 %id)
AA330240   .a 1862 to 2076 1 to 217       217/217
(100 %)
2 diff
(99.1 %id)
AW955674   .a 1863 to 2460 1 to 598       598/599
(99 %)
1 diff
(99.9 %id)
TI_149305972   .a 1907 to 2517 703 to 93   AAA   611/915
(66 %)
1 diff
(99.9 %id)
BU686155 lung, Primary Lung Epithelial Cells .a 1907 to 2517 629 to 19   AAA   611/641
(95 %)
1 diff
(99.9 %id)
H50724 liver and spleen .a 1926 to 2386 1 to 481       481/481
(100 %)
26 diff
(94.6 %id)
DA286313 corpus callosum .a 1999 to 2496 2 to 500   capped   499/499
(100 %)
2 diff
(99.6 %id)
BF028964 bladder, carcinoma, cell line .a 2008 to 2593 1 to 583       583/867
(67 %)
12 diff
(98.7 %id)
DA543594   .a 2103 to 2676 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
AA602748 breast, breast tumor .a 2129 to 2351 1 to 223     Submitted on the opposite strand 223/223
(100 %)
1 diff
(99.6 %id)
DW432158 Liver .a 2180 to 2429 266 to 17       250/266
(93 %)
0 diff
(100 %id)
DW432466 Liver .a 2182 to 2429 265 to 17       249/265
(93 %)
0 diff
(100 %id)
CK430790 eye, lacrimal gland .a 2195 to 2816 1 to 622       622/622
(100 %)
0 diff
(100 %id)
BI227442 Burkitt lymphoma, lymph .a 2381 to 3141 41 to 796       756/881
(85 %)
42 diff
(95.3 %id)
BU658418 blood .a 2562 to 2867 306 to 1     Submitted on the opposite strand 306/306
(100 %)
6 diff
(98.1 %id)
CX787042 human embryonic stem cells .a 2642 to 3434 1 to 792       792/792
(100 %)
3 diff
(99.7 %id)
BI258804 cervical carcinoma cell line, cervix .a 2656 to 3431 1 to 784       784/801
(97 %)
49 diff
(93.9 %id)
AW902848 nervous_normal .a 2714 to 2875 164 to 3       162/164
(98 %)
0 diff
(100 %id)
F11142 brain, total brain .a 2758 to 3086 1 to 329       329/329
(100 %)
0 diff
(100 %id)
BF060758 pooled .a 2761 to 3157 1 to 397     Submitted on the opposite strand 397/427
(92 %)
10 diff
(97.7 %id)
AA464699 ovarian tumor, ovary .a 2762 to 3146 1 to 385     Submitted on the opposite strand 385/385
(100 %)
0 diff
(100 %id)
AI745281 pooled .a 2762 to 3194 1 to 433     Submitted on the opposite strand 433/433
(100 %)
0 diff
(100 %id)
AW085579 pooled .a 2762 to 3184 1 to 424     Submitted on the opposite strand 424/424
(100 %)
3 diff
(99.3 %id)
AV701427 adrenal gland .a 2789 to 3407 1 to 617       617/620
(99 %)
4 diff
(99.4 %id)
CF136900 lymph .a 2800 to 3201 18 to 420       403/420
(95 %)
9 diff
(97.9 %id)
TI_154166206   .a 2800 to 3256 90 to 547       458/469
(97 %)
9 diff
(98.1 %id)
BP420632 small intestine .a 2874 to 3380 1 to 507     Submitted on the opposite strand 507/507
(100 %)
1 diff
(99.9 %id)
AA825887 germinal center B cell .a 2942 to 3249 315 to 8       308/315
(97 %)
0 diff
(100 %id)
AA683246 schizophrenic brain S-11 frontal lobe .a 3071 to 3489 1 to 419     Submitted on the opposite strand 419/419
(100 %)
0 diff
(100 %id)
AA936240 adenocarcinoma, colon .a 3090 to 3484 1 to 394     Submitted on the opposite strand 394/394
(100 %)
4 diff
(99.0 %id)
AW968585   .a 3107 to 3635 29 to 557       529/564
(93 %)
6 diff
(99.0 %id)
BX332561 Neuroblastoma Cot 25-normalized .a 3137 to 4119 985 to 1       985/1052
(93 %)
19 diff
(98.2 %id)
H50638 liver and spleen .a 3147 to 3412 271 to 1       271/271
(100 %)
5 diff
(98.2 %id)
AA252582 germinal center B cell .a 3159 to 3577 1 to 419       419/419
(100 %)
2 diff
(99.6 %id)
BG492503 lung, mucoepidermoid carcinoma .a 3182 to 3802 1 to 626       626/627
(99 %)
14 diff
(97.8 %id)
N90846 multiple sclerosis lesions .a 3239 to 3724 1 to 481       481/500
(96 %)
10 diff
(98.0 %id)
N77132 multiple sclerosis lesions .a 3277 to 3581 1 to 307       307/307
(100 %)
3 diff
(99.1 %id)
TI_149310096   .a 3373 to 4149 859 to 87   AAA   773/952
(81 %)
22 diff
(97.7 %id)
TI_149272459   .a 3387 to 4149 840 to 89   AAA   752/983
(76 %)
20 diff
(98.0 %id)
AA159730   .a 3418 to 3786 1 to 370   fully sequenced,   370/370
(100 %)
1 diff
(99.8 %id)
BF217269 brain, glioblastoma .a 3434 to 4144 1 to 704       704/878
(80 %)
29 diff
(96.7 %id)
BU677396 lung, Primary Lung Epithelial Cells .a 3479 to 3979 1 to 501     Submitted on the opposite strand 501/501
(100 %)
2 diff
(99.7 %id)
BM983366 lung, Primary Lung Epithelial Cells .a 3479 to 4150 1 to 672     Submitted on the opposite strand 672/698
(96 %)
5 diff
(99.3 %id)
BU675084 lung, Primary Lung Epithelial Cells .a 3491 to 4149 675 to 19   AAA   657/657
(100 %)
3 diff
(99.6 %id)
BU688435 lung .a 3505 to 4149 661 to 17   AAA   645/645
(100 %)
5 diff
(99.3 %id)
AI627846 Kidney .a 3575 to 4157 583 to 2       582/592
(98 %)
0 diff
(100 %id)
BQ346973 nervous_tumor .a 3578 to 4018 1 to 442       442/442
(100 %)
8 diff
(98.2 %id)
AI686196 Prostate .a 3581 to 4149 569 to 1       569/569
(100 %)
0 diff
(100 %id)
AI766030 Kidney .a 3607 to 4149 542 to 1       542/542
(100 %)
2 diff
(99.7 %id)
DB295605   .a 3619 to 4154 537 to 1       537/538
(99 %)
1 diff
(99.9 %id)
DB330362   .a 3619 to 4149 531 to 1       531/531
(100 %)
1 diff
(99.9 %id)
BU615646 Bone, Enchondroma cell line .a 3644 to 4149 524 to 19   AAA   506/506
(100 %)
0 diff
(100 %id)
BF031819 hypernephroma, Kidney .a 3658 to 4152 1 to 488       488/819
(59 %)
13 diff
(98.5 %id)
TI_154089464   .a 3710 to 4149 548 to 108   AAA   441/1140
(38 %)
9 diff
(99.3 %id)
AI478216 Kidney .a 3715 to 4151 437 to 1       437/437
(100 %)
0 diff
(100 %id)
DB521133 testis .a 3727 to 4153 1 to 428     Submitted on the opposite strand 428/431
(99 %)
2 diff
(99.6 %id)
AA159731   .a 3756 to 4133 380 to 1   fully sequenced,   380/380
(100 %)
1 diff
(99.8 %id)
N62186 multiple sclerosis lesions .a 3758 to 4157 411 to 1   tiling clone,   411/468
(87 %)
15 diff
(96.8 %id)
AA732427 germinal center B cell .a 3805 to 4149 370 to 26   AAA   345/345
(100 %)
0 diff
(100 %id)
AW576495 lymph .a 3874 to 4149 293 to 18   AAA   276/276
(100 %)
2 diff
(99.3 %id)
F08813 brain, total brain .a 3940 to 4149 210 to 1       210/210
(100 %)
0 diff
(100 %id)
DB040199 testis .b 1 to 580 2 to 581   tiling clone, capped   580/580
(100 %)
0 diff
(100 %id)
BI828313 brain, medulla .b 175 to 378 252 to 48     Submitted on the opposite strand 205/252
(81 %)
0 diff
(100 %id)
TI_57175403   .b 175 to 378 294 to 90     Submitted on the opposite strand 205/294
(69 %)
0 diff
(100 %id)
DB337768 testis .b 1220 to 1741 522 to 1   tiling clone,   522/522
(100 %)
0 diff
(100 %id)
BI559609 testis .c 1 to 756 1 to 770   tiling clone,   767/770
(99 %)
33 diff
(95.8 %id)
TI_44347867   .c 6 to 647 92 to 741       650/856
(75 %)
13 diff
(98.5 %id)
BI560441 testis .c 47 to 916 1 to 876       876/876
(100 %)
29 diff
(96.7 %id)
TI_44349416   .c 48 to 916 89 to 963       875/963
(90 %)
27 diff
(97.2 %id)
DB455699 testis .c 67 to 548 1 to 482       482/482
(100 %)
0 diff
(100 %id)
DR000121 fetal brain .c 72 to 738 1 to 667       667/667
(100 %)
5 diff
(99.3 %id)
BF666935 brain, primitive neuroectoderm .c 88 to 668 1 to 585       585/660
(88 %)
23 diff
(96.6 %id)
BM554478 brain, medulla .c 88 to 1006 17 to 945       929/979
(94 %)
39 diff
(96.1 %id)
BG719553 testis .c 92 to 569 1 to 477       477/478
(99 %)
6 diff
(98.8 %id)
AK299691 brain .c 210 to 1219 1 to 1010   tiling clone,   1010/1010
(100 %)
0 diff
(100 %id)
DC376004 brain .c 210 to 782 1 to 573       573/573
(100 %)
0 diff
(100 %id)
CF136742 lymph .c 231 to 687 1 to 457       457/457
(100 %)
5 diff
(99.0 %id)
TI_154165895   .c 238 to 707 80 to 549       470/470
(100 %)
0 diff
(100 %id)
TI_1948222261   .c 242 to 763 126 to 650       525/1488
(35 %)
26 diff
(98.3 %id)
TI_1948222863   .c 242 to 832 128 to 719       592/1388
(42 %)
31 diff
(97.8 %id)
AA314096 colon .c 324 to 800 1 to 472       472/472
(100 %)
6 diff
(98.8 %id)
CN348098 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 337 to 565 1 to 229       229/229
(100 %)
5 diff
(97.9 %id)
BI520526 brain, medulla .d 1 to 750 1 to 751   tiling clone, fully sequenced,   751/751
(100 %)
1 diff
(99.9 %id)
TI_43963694   .d 1 to 750 28 to 778   fully sequenced,   751/778
(96 %)
7 diff
(99.2 %id)
BI520601 brain, medulla .d 720 to 1325 646 to 24   tiling clone, fully sequenced,   623/646
(96 %)
5 diff
(99.3 %id)
TI_43963695   .d 720 to 1325 646 to 24   fully sequenced,   623/646
(96 %)
5 diff
(99.3 %id)
BF979668 testis .e 1 to 661 1 to 660   tiling clone,   660/931
(70 %)
8 diff
(99.2 %id)
CN348097 embryonic stem cells, cell lines H1, H7, andH9 .e 307 to 1064 1 to 757       757/757
(100 %)
3 diff
(99.7 %id)
CB052768.
matches multiple genes
leiomyosarcoma, soft tissue .e 492 to 1166 10 to 684   tiling clone, also hits gene skofa 675/684
(98 %)
10 diff
(98.6 %id)
BM922695 leukocyte .f 1 to 942 26 to 976 E7* tiling clone,   951/1062
(89 %)
35 diff
(96.8 %id)
DB532544.
matches multiple genes
hippocampus .g-u 1 to 422 422 to 1 exact tiling clone, also hits gene choylar 422/424
(99 %)
2 diff
(99.6 %id)
AA405101 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene C9orf41, variant not shown         Submitted on the opposite strand    
AW452350   Gene C9orf41, variant not shown       AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS, this clone was ignored    
TI_1948223173   Gene C9orf41, variant not shown         This clone was ignored    
DB220146 trachea Gene C9orf41, variant not shown       capped This clone was ignored    
DB349371 trachea Gene C9orf41, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C