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Gene C9orf40TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
117 supporting clones for gene C9orf40 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB452265 testis .a -11 to 488 1 to 499       499/499
(100 %)
4 diff
(99.2 %id)
BX418874 brain, fetal brain .a -9 to 1096 1 to 1096 G134E D135T W136G V138S A139H ... tiling clone,   1096/1096
(100 %)
28 diff
(97.5 %id)
DA485194 brain .a 1 to 551 5 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
CA455029   .a 1 to 613 4 to 619       619/912
(67 %)
16 diff
(98.3 %id)
DB023929 testis .a 1 to 557 4 to 560   capped   559/560
(99 %)
1 diff
(99.9 %id)
DR007000 Spleen .a 1 to 594 2 to 597       597/600
(99 %)
6 diff
(99.0 %id)
DA031237   .a 1 to 575 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
CN365128 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2 to 624 1 to 624       624/624
(100 %)
2 diff
(99.7 %id)
DB457681 testis .a 3 to 470 1 to 468       468/468
(100 %)
0 diff
(100 %id)
CN365130 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 6 to 571 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
BI255264 cervical carcinoma cell line, cervix .a 6 to 713 1 to 716       716/716
(100 %)
16 diff
(97.8 %id)
BI256393 cervical carcinoma cell line, cervix .a 7 to 730 1 to 732       729/992
(73 %)
17 diff
(98.3 %id)
BI858255 breast, mammary adenocarcinoma, cell line .a 8 to 706 1 to 701       701/705
(99 %)
14 diff
(98.1 %id)
TI_57187057   .a 8 to 706 54 to 754       701/705
(99 %)
14 diff
(98.1 %id)
CX165166 human embryonic stem cells differentiated toan early endodermal cell type .a 13 to 310 1 to 298       298/304
(98 %)
1 diff
(99.7 %id)
BC039588 Duodenum, adenocarcinoma .a 17 to 1226 1 to 1210 exact tiling clone, available from MGC, AAA   1210/1210
(100 %)
0 diff
(100 %id)
BM553519 duodenal adenocarcinoma, cell line, small intestine .a 18 to 598 1 to 583       583/1249
(46 %)
8 diff
(99.4 %id)
CR596886 Placenta Cot 25-normalized .a 291 to 1874 1 to 1584       1584/1584
(100 %)
0 diff
(100 %id)
AL552452 placenta, Placenta Cot 25-normalized .a 291 to 1070 1 to 798   fully sequenced,   400/400
(100 %)
18 diff
(95.5 %id)
CD579588 brain .a 356 to 988 1 to 633       633/637
(99 %)
12 diff
(98.2 %id)
BI254101 cervical carcinoma cell line, cervix .a 373 to 1176 1 to 855       827/1143
(72 %)
71 diff
(93.8 %id)
BM785372 Ascites, stomach .a 405 to 981 1 to 577       577/577
(100 %)
0 diff
(100 %id)
BF968478 adrenal cortex carcinoma, cell line, adrenal gland .a 427 to 1148 1 to 723       723/820
(88 %)
19 diff
(97.7 %id)
BG260673 bladder, transitional cell papilloma, cell line .a 505 to 1186 1 to 687       687/746
(92 %)
17 diff
(97.8 %id)
TI_57218553   .a 551 to 1180 31 to 667       637/753
(84 %)
18 diff
(97.7 %id)
BI755664 brain .a 556 to 1180 1 to 632       632/718
(88 %)
12 diff
(98.4 %id)
CX783437 human embryonic stem cells .a 575 to 1231 1 to 657   AAA   657/657
(100 %)
0 diff
(100 %id)
AK000972 whole embryo, mainly head .a 652 to 1896 702 to 1946 R141C tiling clone, available from FLJ,   1946/1946
(100 %)
3 diff
(99.9 %id)
AK225349 Liver .a 652 to 831 667 to 846 T11A R157G     846/846
(100 %)
3 diff
(99.7 %id)
CR599227 Neuroblastoma Cot 25-normalized .a 652 to 1868 715 to 1931 exact     1931/1931
(100 %)
0 diff
(100 %id)
AL527446 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 652 to 897 713 to 947 N144K E145* fully sequenced,   916/947
(96 %)
13 diff
(98.7 %id)
AU118012 whole embryo, mainly head .a 652 to 691 704 to 745   capped   744/889
(83 %)
9 diff
(99.0 %id)
BE902505 choriocarcinoma, placenta .a 652 to 712 656 to 717       717/837
(85 %)
41 diff
(95.2 %id)
DR760473 embryonic stem .a 652 to 683 682 to 713       703/713
(98 %)
6 diff
(99.2 %id)
TI_45212198   .a 652 to 700 789 to 836       749/836
(89 %)
7 diff
(99.2 %id)
TI_45212199   .a 652 to 683 818 to 849       736/852
(86 %)
9 diff
(99.0 %id)
NM_017998.2   .a 652 to 2274 702 to 2324 exact RefSeq, AAA   2324/2324
(100 %)
0 diff
(100 %id)
CN365129 embryonic stem cells, cell lines H1, H7, andH9 .a 656 to 916 1 to 260       260/260
(100 %)
3 diff
(98.9 %id)
BF331824 breast .a 674 to 818 152 to 9       144/163
(88 %)
3 diff
(98.2 %id)
AW995585 breast_normal .a 677 to 1039 5 to 367       363/367
(98 %)
6 diff
(98.4 %id)
BF331822 breast .a 684 to 1012 1 to 329       329/329
(100 %)
4 diff
(98.8 %id)
BF331885 breast .a 691 to 924 234 to 1       234/234
(100 %)
0 diff
(100 %id)
AA480970 germinal center B cell .a 700 to 1019 1 to 320       320/320
(100 %)
2 diff
(99.4 %id)
T84910 liver and spleen .a 706 to 1068 1 to 368       368/371
(99 %)
7 diff
(98.2 %id)
BF590861 colon, colon tumor, RER+ .a 710 to 1225 519 to 4       516/519
(99 %)
0 diff
(100 %id)
R18483 whole brain .a 741 to 1103 1 to 370       370/372
(99 %)
13 diff
(96.6 %id)
H08091 whole brain .a 741 to 1131 1 to 398       398/409
(97 %)
11 diff
(97.4 %id)
AW450287   .a 758 to 1226 483 to 15   AAA   469/469
(100 %)
2 diff
(99.6 %id)
DB523172 testis .a 772 to 1228 1 to 457     Submitted on the opposite strand 457/457
(100 %)
0 diff
(100 %id)
AA811801 germinal center B cell .a 774 to 1228 468 to 14   AAA   455/455
(100 %)
2 diff
(99.6 %id)
AI625799 Kidney .a 774 to 1226 453 to 1       453/453
(100 %)
0 diff
(100 %id)
AW297437   .a 778 to 1228 466 to 16   AAA   451/451
(100 %)
0 diff
(100 %id)
BU954851 mixed (pool of 40 RNAs) .a 779 to 1228 1 to 450       450/812
(55 %)
2 diff
(99.8 %id)
BQ027571 mixed .a 783 to 1228 464 to 19   AAA   446/446
(100 %)
1 diff
(99.8 %id)
BF372161 prostate_tumor .a 785 to 1160 378 to 5       374/378
(98 %)
0 diff
(100 %id)
AI423542 brain, glioblastoma (pooled) .a 787 to 1223 437 to 1       437/437
(100 %)
0 diff
(100 %id)
AI018160 pooled .a 826 to 1229 405 to 2       404/405
(99 %)
0 diff
(100 %id)
AI221969 pooled .a 826 to 1229 407 to 4       404/407
(99 %)
0 diff
(100 %id)
AI381959 pooled .a 851 to 1228 394 to 17   AAA   378/378
(100 %)
3 diff
(99.3 %id)
AL527408 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 867 to 1867 992 to 1   fully sequenced,   992/992
(100 %)
13 diff
(98.7 %id)
BM839793 myeloma .a 869 to 1231 1 to 365   AAA   365/365
(100 %)
2 diff
(99.5 %id)
BX406053 fetal liver, Liver .a 876 to 1892 1009 to 1       1009/1009
(100 %)
14 diff
(98.7 %id)
AA251796 germinal center B cell .a 896 to 1212 317 to 1       317/317
(100 %)
0 diff
(100 %id)
BI860765 breast, mammary adenocarcinoma, cell line .a 907 to 1646 1 to 748       748/766
(97 %)
24 diff
(96.9 %id)
TI_57192748   .a 907 to 1646 56 to 803       748/766
(97 %)
24 diff
(96.9 %id)
CF141945 CNCAP(3)T-225 cell line, Prostate .a 941 to 1338 8 to 405       398/405
(98 %)
6 diff
(98.6 %id)
TI_154172774   .a 941 to 1533 80 to 672       593/594
(99 %)
9 diff
(98.5 %id)
AI215002   .a 982 to 1229 251 to 4       248/251
(98 %)
0 diff
(100 %id)
BG170070 hypernephroma, cell line, Kidney .a 989 to 1774 1 to 788       788/790
(99 %)
13 diff
(98.4 %id)
BU960802 mixed (pool of 40 RNAs) .a 1015 to 1232 1 to 218       218/254
(85 %)
1 diff
(99.7 %id)
AL552426 placenta, Placenta Cot 25-normalized .a 1040 to 1874 837 to 1   fully sequenced,   837/837
(100 %)
50 diff
(94.1 %id)
AA766518 germinal center B cell .a 1075 to 1228 166 to 13   AAA   154/154
(100 %)
0 diff
(100 %id)
D19828   .a 1084 to 1227 1 to 144     Submitted on the opposite strand 144/146
(98 %)
2 diff
(98.7 %id)
AA321700   .a 1125 to 1439 1 to 317       317/318
(99 %)
10 diff
(96.9 %id)
AW964588   .a 1133 to 1782 1 to 649       649/650
(99 %)
21 diff
(96.8 %id)
AW968507   .a 1203 to 1904 702 to 1     Submitted on the opposite strand 702/703
(99 %)
14 diff
(98.1 %id)
BU631993 cell lines, Chondrosarcoma .a 1228 to 1902 693 to 19   AAA   675/675
(100 %)
0 diff
(100 %id)
CD743157 Alveolar Macrophage, lung .a 1242 to 1905 682 to 19   AAA   664/664
(100 %)
0 diff
(100 %id)
AA453690 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1243 to 1597 1 to 355       355/355
(100 %)
1 diff
(99.8 %id)
N79432 multiple sclerosis lesions .a 1261 to 1426 1 to 166       166/170
(97 %)
3 diff
(98.3 %id)
BX412752 brain, fetal brain .a 1263 to 1895 634 to 1       634/815
(77 %)
67 diff
(91.8 %id)
BE786144 large cell carcinoma, lung .a 1284 to 1973 1 to 685       685/835
(82 %)
9 diff
(99.0 %id)
H81703 eye, retina .a 1421 to 1807 1 to 395   fully sequenced,   395/395
(100 %)
5 diff
(98.8 %id)
AV727243 hypothalamus .a 1441 to 2011 31 to 600       570/600
(95 %)
6 diff
(99.0 %id)
AU144681 whole embryo, mainly head .a 1454 to 1896 444 to 1       444/581
(76 %)
3 diff
(99.5 %id)
AA482012 germinal center B cell .a 1455 to 1905 463 to 13   AAA   451/451
(100 %)
1 diff
(99.8 %id)
DB517821 testis .a 1461 to 1902 1 to 442     Submitted on the opposite strand 442/442
(100 %)
0 diff
(100 %id)
AA480907 germinal center B cell .a 1481 to 1905 437 to 13   AAA   425/425
(100 %)
1 diff
(99.8 %id)
AA447760 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1605 to 1903 304 to 6       299/304
(98 %)
0 diff
(100 %id)
T91936 liver and spleen .a 1665 to 1894 237 to 6       232/237
(97 %)
0 diff
(100 %id)
AW276200 lung, two pooled squamous cell carcinomas .a 1682 to 2274 593 to 1   tiling clone,   593/593
(100 %)
0 diff
(100 %id)
AI800603 pooled .a 1752 to 2275 529 to 6       524/529
(99 %)
11 diff
(98.0 %id)
H81704 eye, retina .a 1777 to 1882 106 to 1   fully sequenced,   106/106
(100 %)
1 diff
(99.1 %id)
BF509281   .a 1803 to 2277 2 to 476   tiling clone, Submitted on the opposite strand 475/494
(96 %)
4 diff
(99.2 %id)
AA846688 parathyroid gland, parathyroid tumor .a 1828 to 2277 462 to 7       456/462
(98 %)
0 diff
(100 %id)
AI379885 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1839 to 2274 437 to 1       437/437
(100 %)
2 diff
(99.6 %id)
AI138740   .a 1840 to 2275 438 to 3       436/438
(99 %)
0 diff
(100 %id)
AI080231 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1843 to 2274 432 to 1       432/432
(100 %)
0 diff
(100 %id)
CK819008 Islets of Langerhans, Pancreas .a 1861 to 2274 1 to 414   AAA   414/414
(100 %)
0 diff
(100 %id)
BM126911 Islets of Langerhans, Pancreas .a 1877 to 2274 1 to 398   AAA   398/398
(100 %)
0 diff
(100 %id)
BM126413 Islets of Langerhans, Pancreas .a 1877 to 2274 1 to 398   AAA   398/398
(100 %)
0 diff
(100 %id)
AA992869   .a 1960 to 2275 320 to 5       316/320
(98 %)
0 diff
(100 %id)
AW383614 head_neck .a 1961 to 2211 1 to 251       251/251
(100 %)
1 diff
(99.7 %id)
BQ356421 head_neck .a 1989 to 2211 1 to 224       224/224
(100 %)
1 diff
(99.6 %id)
DR978466 brain .a 1994 to 2158 162 to 1       162/170
(95 %)
2 diff
(98.9 %id)
AA968731 carcinoid, lung .a 2002 to 2239 1 to 238     Submitted on the opposite strand 238/238
(100 %)
0 diff
(100 %id)
AI681247 carcinoid, lung .a 2002 to 2239 1 to 238     Submitted on the opposite strand 238/238
(100 %)
0 diff
(100 %id)
R41333 whole brain .a 2010 to 2274 280 to 15   AAA   266/269
(98 %)
2 diff
(99.3 %id)
AW612715 carcinoid, lung .a 2030 to 2239 1 to 210     Submitted on the opposite strand 210/210
(100 %)
0 diff
(100 %id)
DA263516 caudate nucleus Gene C9orf40, variant not shown       capped      
DA271453 caudate nucleus Gene C9orf40, variant not shown       capped      
CN288290 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells Gene C9orf40, variant not shown              
CN365131 embryonic stem cells, DMSO-treated H9 cellline Gene C9orf40, variant not shown              
DA530425 brain Gene C9orf40, variant not shown       capped      
BP240784 Liver Gene C9orf40, variant not shown              
BE903666 choriocarcinoma, placenta Gene C9orf40, variant not shown              
BI599348 brain, hypothalamus Gene C9orf40, variant not shown              
BI599349 brain, hypothalamus Gene C9orf40, variant not shown              
BQ269704 Pancreas, Purified pancreatic islet Gene C9orf40, variant not shown              
BQ286353 Pancreas, Purified pancreatic islet Gene C9orf40, variant not shown              
BQ002834 Chondrosarcoma, Left Pelvis Gene C9orf40, variant not shown       AAA      
BQ631701 Pancreas, Purified pancreatic islet Gene C9orf40, variant not shown              
BQ632002 Pancreas, Purified pancreatic islet Gene C9orf40, variant not shown              
CA771039 Pancreas, Purified pancreatic islet Gene C9orf40, variant not shown              
CA771340 Pancreas, Purified pancreatic islet Gene C9orf40, variant not shown              
BU603184 mixed (pool of 40 RNAs) Gene C9orf40, variant not shown              
DA891713 rectum Gene C9orf40, variant not shown       capped      
DA905322   Gene C9orf40, variant not shown       capped      
DA916669 small intestine Gene C9orf40, variant not shown       capped      
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes C