To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene SCAITABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
129 supporting clones for gene SCAI back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_173690.4   .a 1 to 12207 2 to 12208 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 12208/12208
(100 %)
0 diff
(100 %id)
AK098024 thymus .a 63 to 2030 1 to 1968 I455F M576T tiling clone, available from FLJ,   1968/1968
(100 %)
3 diff
(99.9 %id)
DB119040 thymus .a 64 to 425 2 to 363   capped   362/362
(100 %)
0 diff
(100 %id)
BC104030 PCR rescued clones .a 72 to 2033 1 to 1962 exact tiling clone,   1962/1962
(100 %)
1 diff
(100.0 %id)
DB343839 thymus .a 1485 to 2030 546 to 1       546/546
(100 %)
1 diff
(99.9 %id)
NM_001144877.2   .b 1 to 12138 2 to 12139 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 12139/12139
(100 %)
0 diff
(100 %id)
DB048788 testis .b 1 to 589 2 to 590   tiling clone, capped   589/589
(100 %)
0 diff
(100 %id)
AK093983 uterus .b 41 to 1961 1 to 1921 A37T available from FLJ,   1921/1921
(100 %)
1 diff
(100.0 %id)
AX748393   .b 41 to 1961 1 to 1921 A37T     1921/1921
(100 %)
1 diff
(100.0 %id)
DB249651 uterus .b 42 to 593 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
CN397721 embryonic stem cells, cell lines H1, H7, andH9 .b 59 to 737 1 to 679       679/679
(100 %)
4 diff
(99.5 %id)
BC104031 PCR rescued clones .b 72 to 1961 1 to 1890 exact tiling clone,   1890/1890
(100 %)
0 diff
(100 %id)
BI004178 head_normal .b 81 to 534 474 to 23       452/476
(94 %)
1 diff
(99.8 %id)
AW297952   .b 83 to 546 1 to 464     Submitted on the opposite strand 464/464
(100 %)
1 diff
(99.8 %id)
AW298468   .b 83 to 567 1 to 485     Submitted on the opposite strand 485/485
(100 %)
1 diff
(99.8 %id)
BG495801 lung, mucoepidermoid carcinoma .b 426 to 966 1 to 545       545/788
(69 %)
7 diff
(99.2 %id)
BE927893 colon .b 1205 to 1447 29 to 272       244/285
(85 %)
21 diff
(92.7 %id)
BG497612 adenocarcinoma, Prostate .b 1362 to 1977 1 to 624   available from MGC,   624/631
(98 %)
18 diff
(97.2 %id)
BC029431 Prostate, adenocarcinoma. .b 1363 to 2630 1 to 1270   tiling clone, available from MGC, AAA   1270/1270
(100 %)
3 diff
(99.8 %id)
W93898 heart .b 1385 to 1750 1 to 366       366/373
(98 %)
2 diff
(99.5 %id)
BX105452 heart .b 1386 to 1961 1 to 576   AAA   576/576
(100 %)
0 diff
(100 %id)
AF086497   .b 1386 to 1961 1 to 576   AAA   576/576
(100 %)
0 diff
(100 %id)
W93859 heart .b 1386 to 1961 579 to 1       579/588
(98 %)
3 diff
(99.5 %id)
AV754547 pituitary tumor .b 1441 to 1824 7 to 383       381/384
(99 %)
10 diff
(97.4 %id)
DB351033 uterus .b 1441 to 1961 521 to 1       521/522
(99 %)
0 diff
(100 %id)
AW978891   .b 1446 to 2068 621 to 1     Submitted on the opposite strand 621/641
(96 %)
8 diff
(98.8 %id)
DW435598 Liver .b 1491 to 1729 17 to 255       239/255
(93 %)
6 diff
(97.7 %id)
DW453230 Liver .b 1491 to 1662 17 to 188       172/188
(91 %)
6 diff
(96.9 %id)
AA829836 germinal center B cell .b 1750 to 2078 330 to 1       330/330
(100 %)
3 diff
(99.1 %id)
BG256457 embryonal carcinoma, cell line, testis .b 3193 to 3817 1 to 621   tiling clone,   621/841
(73 %)
21 diff
(97.6 %id)
AW878670 ovary .b 3350 to 3603 265 to 12   tiling clone,   254/265
(95 %)
0 diff
(100 %id)
AL707666 human skeletal muscle .b 3732 to 4251 1 to 519   tiling clone,   519/519
(100 %)
2 diff
(99.7 %id)
DB153437 thymus .b 4186 to 4781 2 to 598   tiling clone, capped   597/597
(100 %)
2 diff
(99.7 %id)
BF858103 prostate_tumor .b 4223 to 4713 1 to 492   tiling clone,   492/492
(100 %)
6 diff
(98.8 %id)
BE001931 breast_normal .b 4309 to 4741 433 to 1     Submitted on the opposite strand 433/435
(99 %)
8 diff
(98.2 %id)
CN292361 embryonic stem cells, DMSO-treated H9 cellline .b 4345 to 4547 1 to 203       203/203
(100 %)
3 diff
(98.6 %id)
AA757322 pooled .b 4665 to 4776 24 to 135     Submitted on the opposite strand 112/135
(82 %)
6 diff
(95.6 %id)
CD686654 normal nasopharynx .b 4791 to 4896 21 to 126   tiling clone,   106/126
(84 %)
6 diff
(95.3 %id)
AA970239 pooled .b 6084 to 6396 1 to 313   tiling clone, Submitted on the opposite strand 313/313
(100 %)
0 diff
(100 %id)
DB260632 uterus .b 6258 to 6810 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA220506 brain .b 6299 to 6866 2 to 569   tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
BQ027649 mixed .b 6447 to 7137 708 to 19   AAA   690/690
(100 %)
1 diff
(99.9 %id)
CA424696 cell lines, Chondrosarcoma .b 6474 to 7141 684 to 18   tiling clone, AAA   667/667
(100 %)
2 diff
(99.8 %id)
DB346294 thymus .b 6600 to 7139 540 to 1       540/540
(100 %)
0 diff
(100 %id)
CF143784 lymph .b 6972 to 7370 1 to 399       399/399
(100 %)
5 diff
(98.8 %id)
CF143825 lymph .b 6972 to 7380 1 to 409       409/409
(100 %)
5 diff
(98.8 %id)
TI_154175363   .b 6978 to 7390 77 to 489       413/413
(100 %)
0 diff
(100 %id)
TI_154175443   .b 6978 to 7400 79 to 501   tiling clone,   423/423
(100 %)
0 diff
(100 %id)
DB130677 thymus .b 7397 to 7811 2 to 417   tiling clone, capped   416/416
(100 %)
1 diff
(99.8 %id)
BQ631404 Pancreas, Purified pancreatic islet .b 7463 to 8012 1 to 550     Submitted on the opposite strand 550/550
(100 %)
1 diff
(99.9 %id)
CV575463 cornea, eye .b 7542 to 8095 1 to 556   tiling clone,   556/556
(100 %)
2 diff
(99.7 %id)
D59278   .b 7998 to 8417 421 to 1       421/421
(100 %)
1 diff
(99.8 %id)
D59277   .b 8005 to 8417 413 to 1       413/413
(100 %)
5 diff
(98.8 %id)
AI274944 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 8019 to 8415 413 to 17   tiling clone, AAA   397/397
(100 %)
0 diff
(100 %id)
DA110833 cerebellum .b 8376 to 8939 2 to 565   tiling clone, capped   564/564
(100 %)
2 diff
(99.7 %id)
AW300164 Kidney .b 8420 to 8872 1 to 453     Submitted on the opposite strand 453/453
(100 %)
1 diff
(99.8 %id)
BX436655 thymus .b 8475 to 9402 1 to 925   tiling clone,   925/925
(100 %)
11 diff
(98.9 %id)
AI436194 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 8477 to 8944 1 to 468     Submitted on the opposite strand 468/468
(100 %)
0 diff
(100 %id)
DB137841 thymus .b 8602 to 9166 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
AK021820 whole embryo, mainly head .b 8617 to 10065 1 to 1449   tiling clone, available from FLJ,   1449/1449
(100 %)
5 diff
(99.7 %id)
AU119360 whole embryo, mainly head .b 8618 to 9423 2 to 808   capped   807/807
(100 %)
9 diff
(98.9 %id)
AA351977 brain .b 8760 to 9142 1 to 383       383/383
(100 %)
3 diff
(99.3 %id)
AW672927 cervix .b 9203 to 9546 1 to 345       345/345
(100 %)
1 diff
(99.8 %id)
BI596761 brain, hypothalamus .b 9212 to 10051 1 to 842   available from MGC,   842/845
(99 %)
18 diff
(97.9 %id)
BC037940 Brain, hypothalamus .b 9216 to 10250 5 to 1040   available from MGC, AAA Possibly primed on the genome, locally A rich (30/32 A in genome downstream of last aligned base) 1036/1036
(100 %)
8 diff
(99.3 %id)
TI_45208746   .b 9216 to 10051 128 to 965       838/968
(86 %)
15 diff
(98.5 %id)
H21716 breast .b 9444 to 9786 1 to 354       354/359
(98 %)
13 diff
(96.4 %id)
AU145721 whole embryo, mainly head .b 9477 to 10065 584 to 1       584/590
(98 %)
14 diff
(97.7 %id)
DB114986 thymus .b 9580 to 10136 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BQ631680 Pancreas, Purified pancreatic islet .b 9818 to 10279 465 to 4     Submitted on the opposite strand 462/465
(99 %)
0 diff
(100 %id)
AW675473 cervix .b 10055 to 10433 379 to 1   tiling clone,   379/379
(100 %)
5 diff
(98.7 %id)
CN414541 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 10060 to 10432 1 to 373   tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 373/373
(100 %)
3 diff
(99.2 %id)
DA178506 amygdala .b 10065 to 10476 2 to 415   capped   414/414
(100 %)
13 diff
(96.9 %id)
GD152478   .b 10094 to 10265 1 to 172       172/172
(100 %)
7 diff
(96.0 %id)
CN272886 embryonic stem cells, DMSO-treated H9 cellline .b 10303 to 10755 1 to 453   tiling clone,   453/453
(100 %)
6 diff
(98.7 %id)
F13419 brain, total brain .b 10335 to 10651 1 to 317   tiling clone,   317/317
(100 %)
2 diff
(99.4 %id)
BQ423970 melanotic melanoma, skin .b 10416 to 11283 1 to 869   tiling clone,   869/870
(99 %)
6 diff
(99.4 %id)
BG391260 embryonal carcinoma, cell line, testis .b 10520 to 11233 2 to 712       711/716
(99 %)
27 diff
(96.3 %id)
TI_57219254   .b 10631 to 11379 85 to 848       764/1020
(74 %)
44 diff
(95.7 %id)
BI757633 brain .b 10633 to 11379 1 to 762       762/934
(81 %)
44 diff
(95.3 %id)
AW968394   .b 10734 to 11314 28 to 608       581/608
(95 %)
10 diff
(98.4 %id)
AA465298 germinal center B cell .b 10741 to 11211 1 to 471   tiling clone,   471/471
(100 %)
0 diff
(100 %id)
BG743227 skin .b 10771 to 11627 10 to 868       859/868
(98 %)
6 diff
(99.4 %id)
BF700369 brain, primitive neuroectoderm .b 10828 to 11483 1 to 644       644/819
(78 %)
27 diff
(96.8 %id)
CB962770 Blood vessels - aorta, basilar and artery .b 10930 to 11660 1 to 735       735/766
(95 %)
15 diff
(98.1 %id)
AI680960 carcinoid, lung .b 10959 to 11399 1 to 441     Submitted on the opposite strand 441/441
(100 %)
1 diff
(99.8 %id)
BF244363 brain, glioblastoma .b 11003 to 11648 1 to 642       642/723
(88 %)
18 diff
(97.6 %id)
DN916525   .b 11015 to 11686 1 to 668   tiling clone,   668/672
(99 %)
5 diff
(99.3 %id)
N78424 multiple sclerosis lesions .b 11028 to 11234 1 to 209       209/223
(93 %)
7 diff
(96.9 %id)
CA335045 posterior tongue (pooled) .b 11213 to 11836 1 to 624       624/624
(100 %)
3 diff
(99.6 %id)
CB856705 anterior tongue, pooled .b 11213 to 11705 1 to 493   fully sequenced,   493/493
(100 %)
0 diff
(100 %id)
BM874397   .b 11214 to 11672 1 to 459       459/459
(100 %)
0 diff
(100 %id)
AW363687 colon .b 11318 to 11759 453 to 12       442/467
(94 %)
0 diff
(100 %id)
AW363689 colon .b 11320 to 11761 1 to 439       439/463
(94 %)
5 diff
(99.0 %id)
AW363688 colon .b 11321 to 11761 1 to 441       441/447
(98 %)
5 diff
(98.9 %id)
DB511381.
matches multiple genes
testis .b 11457 to 11901 445 to 1     also hits gene paler 445/445
(100 %)
10 diff
(97.8 %id)
AW900555 nervous_normal .b 11498 to 12085 5 to 597       593/601
(98 %)
6 diff
(99.1 %id)
BM719738 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 11509 to 12123 1 to 615       615/615
(100 %)
0 diff
(100 %id)
BQ188400 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 11509 to 12138 1 to 630   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 630/630
(100 %)
0 diff
(100 %id)
TI_151731765   .b 11510 to 12138 707 to 78   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 630/942
(66 %)
1 diff
(99.9 %id)
DN916526   .b 11527 to 12137 612 to 2       611/612
(99 %)
0 diff
(100 %id)
AW897809 nervous_normal .b 11593 to 11994 24 to 425       402/433
(92 %)
8 diff
(98.2 %id)
AW897807 nervous_normal .b 11598 to 11994 28 to 423       396/431
(91 %)
7 diff
(98.4 %id)
AW969337   .b 11601 to 12137 540 to 1     Submitted on the opposite strand 540/542
(99 %)
12 diff
(97.8 %id)
AI832363 colon .b 11601 to 12138 539 to 1       539/539
(100 %)
6 diff
(98.9 %id)
FN157618 breast carcinoma .b 11616 to 11716 101 to 1     Submitted on the opposite strand 101/102
(99 %)
0 diff
(100 %id)
BE699296 nervous_normal .b 11645 to 11858 13 to 226       214/228
(93 %)
10 diff
(95.7 %id)
AI689798 carcinoid, lung .b 11662 to 12137 476 to 1       476/476
(100 %)
3 diff
(99.4 %id)
DB320156   .b 11673 to 12214 1 to 542   tiling clone, Submitted on the opposite strand 542/542
(100 %)
0 diff
(100 %id)
CB856704 anterior tongue, pooled .b 11675 to 12135 499 to 39   fully sequenced,   461/499
(92 %)
0 diff
(100 %id)
BE504522 carcinoid, lung .b 11688 to 12137 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
BM873972   .b 11692 to 12138 472 to 26   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 447/447
(100 %)
0 diff
(100 %id)
AI367907 adenocarcinoma, colon .b 11704 to 12141 440 to 3       438/440
(99 %)
0 diff
(100 %id)
N62704 multiple sclerosis lesions .b 11710 to 12138 429 to 1       429/429
(100 %)
0 diff
(100 %id)
AI038739   .b 11735 to 12141 411 to 5       407/411
(99 %)
0 diff
(100 %id)
AI673405 colon, colonic mucosa from 5 ulcerative colitispatients .b 11738 to 12138 412 to 12   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 401/401
(100 %)
0 diff
(100 %id)
AA732348 germinal center B cell .b 11762 to 12138 398 to 22   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 377/377
(100 %)
0 diff
(100 %id)
C13993   .b 11808 to 12066 260 to 1       260/260
(100 %)
3 diff
(98.9 %id)
AW471020 carcinoid, lung .b 11813 to 12137 326 to 1       326/326
(100 %)
6 diff
(98.2 %id)
AA480599 colon .b 11820 to 12078 259 to 1       259/259
(100 %)
0 diff
(100 %id)
AI804646 Prostate .b 11837 to 12138 332 to 30   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 303/303
(100 %)
8 diff
(97.4 %id)
AW905612 nervous_normal .b 11864 to 12104 18 to 259       242/259
(93 %)
6 diff
(97.7 %id)
F08925 brain, total brain .b 11883 to 12138 256 to 1       256/256
(100 %)
1 diff
(99.7 %id)
CF528932 placenta .b 11908 to 12138 251 to 21   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 231/231
(100 %)
3 diff
(98.8 %id)
TI_153991152   .b 11929 to 12138 305 to 96   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 210/211
(99 %)
0 diff
(100 %id)
AW206991   .b 11948 to 12138 208 to 18   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 191/191
(100 %)
0 diff
(100 %id)
X65374.
matches multiple genes
brain, breast, lung, Normal mammary gland .b 11961 to 12052 93 to 1     also hits gene ANKS1A, snawweyby 93/94
(98 %)
9 diff
(90.5 %id)
CK299599 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 12063 to 12138 95 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 77/77
(100 %)
0 diff
(100 %id)
BC104032 PCR rescued clones .c 1 to 1808 1 to 1808 exact tiling clone,   1808/1808
(100 %)
0 diff
(100 %id)
BI043520 ovary .d 1 to 213 233 to 14   tiling clone,   220/235
(93 %)
0 diff
(100 %id)
N78319 multiple sclerosis lesions .d 33 to 519 1 to 490   tiling clone,   490/490
(100 %)
7 diff
(98.6 %id)
CN397723 embryonic stem cells, cell lines H1, H7, andH9 .d 503 to 1197 1 to 695   tiling clone,   695/695
(100 %)
3 diff
(99.6 %id)
CN397722 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 1 to 686 1 to 686 S2V A63T tiling clone, AAA   686/686
(100 %)
5 diff
(99.3 %id)
DB108602 thymus .f 1 to 571 2 to 572 D50Y tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
BP417728 small intestine .g 1 to 455 1 to 455 exact tiling clone, Submitted on the opposite strand 455/455
(100 %)
0 diff
(100 %id)
AI015678 Kidney .g 10 to 448 1 to 439     Submitted on the opposite strand 439/439
(100 %)
1 diff
(99.8 %id)
DN996483 breast cancer, Mammary gland (cancer tissue) .h 1 to 546 9 to 554 exact tiling clone,   546/554
(98 %)
0 diff
(100 %id)
CA424863 cell lines, Chondrosarcoma .i 1 to 561 578 to 18 Y52F S53N T54I F55Y I56Y ... tiling clone, AAA   560/560
(100 %)
1 diff
(99.9 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C