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Gene C9orf117TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
43 supporting clones for gene C9orf117 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB088730 testis .a 1 to 556 2 to 557   tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
NM_001012502.2   .a 4 to 1725 1 to 1722 exact RefSeq,   1722/1722
(100 %)
0 diff
(100 %id)
DA334289 hippocampus .a 38 to 560 2 to 524   capped   523/523
(100 %)
1 diff
(99.9 %id)
DB266000 uterus .a 38 to 630 2 to 594   tiling clone, capped   593/593
(100 %)
0 diff
(100 %id)
TI_159723508   .a 1322 to 1726 466 to 62   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 405/999
(40 %)
6 diff
(99.4 %id)
CA945065 Human Lung Epithelial cells, lung .a 1322 to 1726 423 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 405/407
(99 %)
6 diff
(98.6 %id)
AA812702   .a 1394 to 1724 334 to 4       331/334
(99 %)
3 diff
(99.2 %id)
AW050584 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 1533 to 1722 190 to 1       190/190
(100 %)
0 diff
(100 %id)
BC141809 Donated clones,Novartis FGA collection .b 1 to 1799 1 to 1799 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 1799/1799
(100 %)
0 diff
(100 %id)
BF852868 lung_normal .c 1 to 409 409 to 1   tiling clone, Submitted on the opposite strand 409/410
(99 %)
12 diff
(97.1 %id)
W25023 lung .c 379 to 784 8 to 416       409/422
(96 %)
17 diff
(96.0 %id)
AI734275 lung .c 381 to 872 10 to 501   tiling clone,   492/501
(98 %)
6 diff
(98.9 %id)
CB853028 Human Lung Epithelial cells, lung .c 388 to 1074 705 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 687/687
(100 %)
5 diff
(99.3 %id)
CA312978 Human Lung Epithelial cells, lung .c 435 to 1074 656 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 638/638
(100 %)
4 diff
(99.4 %id)
AI668699 lung .c 590 to 1073 485 to 2       484/485
(99 %)
0 diff
(100 %id)
N93264 lung .c 629 to 1073 448 to 1       448/449
(99 %)
8 diff
(98.3 %id)
AI689121 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 642 to 1074 433 to 2       432/433
(99 %)
0 diff
(100 %id)
AW104320 pooled .c 648 to 1073 427 to 2       426/427
(99 %)
0 diff
(100 %id)
AI560019 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 691 to 1074 385 to 1       385/396
(97 %)
1 diff
(99.8 %id)
AI687249 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .c 766 to 1074 311 to 3       309/311
(99 %)
0 diff
(100 %id)
AW082303 pooled .c 779 to 1074 299 to 4       296/299
(98 %)
0 diff
(100 %id)
AI866286 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 807 to 1074 276 to 9       268/277
(96 %)
0 diff
(100 %id)
AW571900 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 879 to 1074 196 to 1       196/196
(100 %)
0 diff
(100 %id)
AK126437 uterus .d 1 to 2128 2 to 2128 R145E G146A S147P T149H H150I ... tiling clone, available from FLJ,   2128/2128
(100 %)
5 diff
(99.8 %id)
DB269263 uterus .d 1 to 568 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
TI_1752770352   .d 394 to 1020 640 to 15       626/1252
(50 %)
0 diff
(100 %id)
BC133027 Brain, cerebellum, PCR rescued clones .d 394 to 2022 1 to 1629 exact tiling clone,   1629/1629
(100 %)
0 diff
(100 %id)
TI_1971555693   .d 945 to 2023 19 to 1095 R204P A205G T206Y W207V P208A ...     1077/1260
(85 %)
9 diff
(99.3 %id)
TI_1971554375   .d 1000 to 2023 1089 to 60 exact   Submitted on the opposite strand 1030/1204
(85 %)
41 diff
(96.6 %id)
TI_159721434   .d 1152 to 2128 1072 to 94 A2H Q3K G11C H16P C17L ... tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 979/1086
(90 %)
34 diff
(96.9 %id)
DB351928 uterus .d 1583 to 2128 550 to 1       550/550
(100 %)
12 diff
(97.9 %id)
AK094948 corpus callosum .e 1 to 2374 2 to 2374 exact tiling clone, available from FLJ,   2374/2374
(100 %)
4 diff
(99.9 %id)
DA285438 corpus callosum .e 1 to 536 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
AI860498 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .e 1485 to 1576 92 to 1       92/92
(100 %)
3 diff
(96.8 %id)
DB307447 corpus callosum .e 1875 to 2374 500 to 1   tiling clone,   500/508
(98 %)
0 diff
(100 %id)
AL833241 amygdala .f 1 to 2708 1 to 2708 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2708/2708
(100 %)
0 diff
(100 %id)
AA909387 pooled .f 346 to 729 385 to 2       384/385
(99 %)
0 diff
(100 %id)
AA906243 pooled .f 472 to 729 259 to 2       258/259
(99 %)
0 diff
(100 %id)
BI829804 brain, medulla .f 1826 to 2708 1 to 889       889/891
(99 %)
11 diff
(98.8 %id)
TI_57176370   .f 1826 to 2708 69 to 957       889/959
(92 %)
11 diff
(98.9 %id)
DB056885 testis .g 1 to 514 6 to 519 exact tiling clone, capped   518/518
(100 %)
0 diff
(100 %id)
TI_149278455   .h-u 1 to 631 726 to 97 A12P F13S L14S K15S R16A ... AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 630/651
(96 %)
4 diff
(99.4 %id)
BM969322 lung, Primary Lung Epithelial Cells .h-u 1 to 646 645 to 1 A12P F13S L14S K15S R16A ... tiling clone,   645/645
(100 %)
6 diff
(99.1 %id)
CN478977 Human Lung Epithelial cells, lung Gene C9orf117, variant not shown       AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
BC125172 PCR rescued clones Gene C9orf117, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C