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Gene C9orf116TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
84 supporting clones for gene C9orf116 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BF339919 brain, glioblastoma with EGFR amplification C9orf116.a 1 to 728 1 to 725   tiling clone,   727/878
(82 %)
33 diff
(96.3 %id)
DR003074 fetal brain C9orf116.a 285 to 923 1 to 641       641/642
(99 %)
10 diff
(98.5 %id)
NM_001048265.1   C9orf116.a 368 to 1094 1 to 727   RefSeq,   727/731
(99 %)
5 diff
(99.4 %id)
BU634102 cell lines, Chondrosarcoma C9orf116.a 390 to 1087 716 to 19   tiling clone, AAA   698/698
(100 %)
0 diff
(100 %id)
BM045887 carcinoma, cell line, Prostate C9orf116.a 409 to 1097 1 to 695       695/887
(78 %)
17 diff
(98.1 %id)
BQ958109 carcinoma, cell line, Prostate C9orf116.a 414 to 1087 1 to 677       677/957
(70 %)
13 diff
(98.7 %id)
BX281254 pooled lung and spleen C9orf116.a 422 to 924 1 to 503       503/503
(100 %)
1 diff
(99.9 %id)
BG166524 hypernephroma, cell line, Kidney C9orf116.a 422 to 1083 1 to 664       664/692
(95 %)
12 diff
(98.3 %id)
BI769148 pooled lung and spleen C9orf116.a 422 to 1036 1 to 615       615/615
(100 %)
0 diff
(100 %id)
TI_57178500   C9orf116.a 422 to 1036 31 to 645       615/645
(95 %)
6 diff
(99.1 %id)
BM686746 eye, optic nerve C9orf116.a 429 to 1084 1 to 657   fully sequenced, AAA   657/657
(100 %)
6 diff
(99.1 %id)
AY927868   C9orf116.a 432 to 842 1 to 411       411/411
(100 %)
0 diff
(100 %id)
BG104790 adrenal cortex carcinoma, cell line, adrenal gland C9orf116.a 440 to 742 1 to 310       310/517
(59 %)
8 diff
(98.5 %id)
BI838181 pooled pancreas and spleen C9orf116.a 440 to 1088 1 to 652       652/682
(95 %)
4 diff
(99.5 %id)
BI838039 pooled pancreas and spleen C9orf116.a 440 to 1087 1 to 649   AAA   649/649
(100 %)
1 diff
(99.9 %id)
TI_57163317   C9orf116.a 440 to 1088 35 to 686       652/794
(82 %)
10 diff
(98.8 %id)
TI_57163484   C9orf116.a 440 to 1087 96 to 744   AAA   649/744
(87 %)
6 diff
(99.2 %id)
BM455428 lymph, lymphoma, cell line C9orf116.a 441 to 1087 1 to 647   AAA   647/647
(100 %)
0 diff
(100 %id)
AW972571   C9orf116.a 500 to 1086 587 to 1     Submitted on the opposite strand 587/588
(99 %)
9 diff
(98.5 %id)
AI830563 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) C9orf116.a 532 to 1086 556 to 1       556/556
(100 %)
5 diff
(99.2 %id)
BF116143 fibrotheoma, ovary C9orf116.a 555 to 1088 534 to 1       534/534
(100 %)
0 diff
(100 %id)
BF593243 Kidney C9orf116.a 561 to 1087 537 to 11   AAA   527/527
(100 %)
3 diff
(99.5 %id)
BG198283   C9orf116.a 569 to 1087 1 to 517   AAA   515/517
(99 %)
12 diff
(97.7 %id)
AA559136 bone marrow, stem cells C9orf116.a 598 to 869 297 to 26       272/304
(89 %)
1 diff
(99.7 %id)
BF434938 Kidney C9orf116.a 600 to 1088 490 to 2       489/490
(99 %)
1 diff
(99.8 %id)
AI766110 Kidney C9orf116.a 611 to 1088 481 to 4       478/481
(99 %)
0 diff
(100 %id)
AI924352 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) C9orf116.a 613 to 1088 476 to 1       476/476
(100 %)
0 diff
(100 %id)
AA506986 breast C9orf116.a 618 to 1088 471 to 1       471/471
(100 %)
1 diff
(99.8 %id)
AI582146 colon C9orf116.a 622 to 1087 466 to 1       466/466
(100 %)
0 diff
(100 %id)
AA417050   C9orf116.a 623 to 1088 470 to 5       466/470
(99 %)
0 diff
(100 %id)
BM672928 eye, optic nerve C9orf116.a 623 to 1084 480 to 19   fully sequenced, AAA   462/462
(100 %)
1 diff
(99.8 %id)
AI419874 pooled C9orf116.a 625 to 1088 471 to 8       464/471
(98 %)
0 diff
(100 %id)
DB543878 hippocampus C9orf116.a 631 to 1085 1 to 455     Submitted on the opposite strand 455/456
(99 %)
1 diff
(99.8 %id)
AA707615   C9orf116.a 654 to 1088 439 to 5       435/442
(98 %)
0 diff
(100 %id)
AI653982 serous papillary carcinoma, high grade, 2pooled tumors, uterus C9orf116.a 654 to 1088 442 to 8       435/452
(96 %)
0 diff
(100 %id)
AI824293 2 pooled tumors (clear cell type), Kidney C9orf116.a 654 to 1086 435 to 6       430/439
(97 %)
0 diff
(100 %id)
AW470778 2 pooled tumors (clear cell type), Kidney C9orf116.a 654 to 1088 440 to 6       435/442
(98 %)
0 diff
(100 %id)
AA923538 2 pooled tumors (clear cell type), Kidney C9orf116.a 664 to 1088 427 to 3       425/427
(99 %)
0 diff
(100 %id)
AW418521 serous papillary carcinoma, high grade, 2pooled tumors, uterus C9orf116.a 676 to 1088 413 to 1       413/413
(100 %)
0 diff
(100 %id)
AI367252 Kidney C9orf116.a 679 to 1087 422 to 14   AAA   409/409
(100 %)
0 diff
(100 %id)
AI028337   C9orf116.a 698 to 1088 393 to 3       391/393
(99 %)
0 diff
(100 %id)
AI253198 Kidney C9orf116.a 699 to 1087 411 to 23   AAA   389/389
(100 %)
1 diff
(99.8 %id)
AA835007   C9orf116.a 706 to 1088 384 to 3       382/384
(99 %)
0 diff
(100 %id)
CK904799 Islets of Langerhans, Pancreas C9orf116.a 710 to 1086 377 to 1       377/383
(98 %)
6 diff
(98.5 %id)
AI968187 pooled germ cell tumors C9orf116.a 714 to 1088 379 to 5       375/379
(98 %)
0 diff
(100 %id)
CK904800 Islets of Langerhans, Pancreas C9orf116.a 716 to 1088 1 to 373   AAA   373/373
(100 %)
0 diff
(100 %id)
AI367250 Kidney C9orf116.a 719 to 1088 372 to 3       370/372
(99 %)
0 diff
(100 %id)
AI081854   C9orf116.a 720 to 1088 370 to 2       369/370
(99 %)
0 diff
(100 %id)
BP395742 pancreatic islet C9orf116.a 727 to 1085 1 to 360     Submitted on the opposite strand 360/366
(98 %)
4 diff
(99.0 %id)
BM069881 Islets of Langerhans, Pancreas C9orf116.a 732 to 1087 1 to 356   AAA   356/356
(100 %)
3 diff
(99.2 %id)
BP369606 testis C9orf116.a 732 to 1087 1 to 357   AAA   357/357
(100 %)
2 diff
(99.5 %id)
DB532291 hippocampus C9orf116.a 738 to 1089 1 to 350   tiling clone, Submitted on the opposite strand 350/350
(100 %)
6 diff
(98.3 %id)
AI198471 placenta C9orf116.a 748 to 1087 340 to 1       340/340
(100 %)
2 diff
(99.5 %id)
AA904762 pooled C9orf116.a 799 to 1088 292 to 3       290/292
(99 %)
0 diff
(100 %id)
AW136460   C9orf116.a 800 to 1087 305 to 18   AAA   288/288
(100 %)
0 diff
(100 %id)
AI873313 pooled C9orf116.a 834 to 1089 264 to 10       255/267
(95 %)
0 diff
(100 %id)
AA879191 metastatic prostate bone lesion C9orf116.a 850 to 1088 9 to 247       239/260
(91 %)
2 diff
(99.3 %id)
AW087636 pooled C9orf116.a 853 to 1088 238 to 3       236/238
(99 %)
0 diff
(100 %id)
AA363224 ovary C9orf116.a 891 to 1000 1 to 110       110/110
(100 %)
0 diff
(100 %id)
AI207096   C9orf116.a 899 to 1088 192 to 3       190/192
(98 %)
0 diff
(100 %id)
AW087600 pooled C9orf116.a 944 to 1088 147 to 3       145/147
(98 %)
0 diff
(100 %id)
BE262865 brain, neuroblastoma C9orf116.b 1 to 721 41 to 764 P4L G36W H37S V38R T39D ...     724/813
(89 %)
31 diff
(96.2 %id)
BC021261 Brain, neuroblastoma C9orf116.b 2 to 781 1 to 780   tiling clone, available from MGC, AAA   780/780
(100 %)
0 diff
(100 %id)
BF317009 brain, neuroblastoma C9orf116.b 17 to 722 1 to 703       703/1015
(69 %)
18 diff
(98.3 %id)
CV029092 mixed C9orf116.b 172 to 449 1 to 278       278/375
(74 %)
2 diff
(99.5 %id)
CN360663 embryonic stem cells, DMSO-treated H9 cellline C9orf116.b 175 to 781 8 to 616   AAA   609/616
(98 %)
2 diff
(99.7 %id)
CN272634 embryonic stem cells, DMSO-treated H9 cellline C9orf116.c-u 1 to 493 1 to 493   tiling clone,   493/493
(100 %)
0 diff
(100 %id)
DB475051 hippocampus C9orf116.c-u 5 to 502 1 to 498       498/498
(100 %)
1 diff
(99.8 %id)
BI547531 brain, hippocampus C9orf116.c-u 35 to 370 1 to 336       336/380
(88 %)
4 diff
(99.0 %id)
BQ932371 sciatic nerve C9orf116.c-u 65 to 640 12 to 599 R82P H88P G89W W90A D91G ... tiling clone,   588/1027
(57 %)
22 diff
(97.9 %id)
AW965149   C9orf116.d 1 to 590 589 to 1 V10W G12E E13K S14A P15Q ... tiling clone, Submitted on the opposite strand 589/668
(88 %)
2 diff
(99.8 %id)
AW965150   C9orf116.d 3 to 321 1 to 320   tiling clone,   320/320
(100 %)
25 diff
(92.2 %id)
AA344961 gall bladder C9orf116.d 5 to 245 1 to 241   tiling clone,   241/241
(100 %)
2 diff
(99.2 %id)
BF998240 placenta_normal C9orf116.e 1 to 594 598 to 5 Q23P A24G Y25L G26R S27E ... tiling clone,   594/609
(97 %)
24 diff
(96.1 %id)
AK024007   C9orf116.f 1 to 1276 2 to 1277   tiling clone, available from FLJ,   1277/1277
(100 %)
3 diff
(99.8 %id)
AU142844   C9orf116.f 1 to 504 2 to 505   capped   504/504
(100 %)
1 diff
(99.9 %id)
NM_144654.2   C9orf116.f 603 to 1283 1 to 681   RefSeq,   681/685
(99 %)
5 diff
(99.3 %id)
AU160041   C9orf116.f 752 to 1276 529 to 1       527/538
(97 %)
11 diff
(98.0 %id)
AW302226 Kidney C9orf116.f 822 to 1277 461 to 6   tiling clone,   456/461
(98 %)
0 diff
(100 %id)
CD687013 normal nasopharynx C9orf116.g-u 1 to 562 38 to 599 M35T tiling clone,   562/599
(93 %)
6 diff
(99.0 %id)
U46429 liver cell line, pancreatic cancer C9orf116.g-u 555 to 901 1 to 346   tiling clone,   346/349
(99 %)
3 diff
(99.2 %id)
CA503250 Human Lung Epithelial cells, lung C9orf116.h-u 1 to 820 832 to 19 T10Y H11P S12L G13W F14L ... tiling clone, AAA   814/822
(99 %)
11 diff
(98.7 %id)
AA947674 pooled Gene C9orf116, variant not shown         Suspected internal deletion, this clone was ignored    
AI634079 pooled germ cell tumors Gene C9orf116, variant not shown         Suspected internal deletion, this clone was ignored    
AI675015 Prostate Gene C9orf116, variant not shown         Suspected internal deletion, this clone was ignored    
BF059370 pooled germ cell tumors Gene C9orf116, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e, .f, .g-u, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C