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Gene TBC1D22BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
266 supporting clones for gene TBC1D22B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA458607 tongue, tumor tissue .a 1 to 542 2 to 543   tiling clone, capped   542/542
(100 %)
0 diff
(100 %id)
DA445276 tongue, tumor tissue .a 15 to 575 2 to 562   capped   561/561
(100 %)
5 diff
(99.2 %id)
BI458722 testis .a 15 to 678 1 to 664   available from MGC,   664/664
(100 %)
5 diff
(99.3 %id)
DB059507 testis .a 15 to 553 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
DB071190 testis .a 15 to 565 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA218000 brain .a 19 to 574 2 to 559   capped   558/558
(100 %)
4 diff
(99.3 %id)
DA516487 brain .a 19 to 577 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
BM153710 leukopheresis .a 19 to 467 1 to 451       451/451
(100 %)
11 diff
(97.6 %id)
DB148470 thymus .a 19 to 566 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
AY313781   .a 20 to 3480 1 to 3461 exact tiling clone, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 3461/3461
(100 %)
3 diff
(100.0 %id)
DA452805 tongue, tumor tissue .a 20 to 580 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
CB989044 Human Placenta, placenta .a 20 to 677 28 to 693       666/794
(83 %)
17 diff
(97.9 %id)
NM_017772.2   .a 20 to 3480 1 to 3461 exact RefSeq, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 3461/3461
(100 %)
1 diff
(100.0 %id)
DA720833   .a 20 to 583 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA807229 brain .a 20 to 527 2 to 509   capped   508/508
(100 %)
0 diff
(100 %id)
DA095044 cerebellum .a 21 to 572 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA098772 cerebellum .a 21 to 561 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA114482 cerebellum .a 21 to 588 2 to 569   capped   568/570
(99 %)
1 diff
(99.9 %id)
DA116145 cerebellum .a 21 to 587 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA117242 cerebellum .a 21 to 588 2 to 569   capped   568/573
(99 %)
2 diff
(99.7 %id)
DA119344 cerebellum .a 21 to 542 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
DA184676 amygdala .a 21 to 527 2 to 508   capped   507/507
(100 %)
0 diff
(100 %id)
DA192065 amygdala .a 21 to 595 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA196633 amygdala .a 21 to 586 2 to 567   capped   566/569
(99 %)
1 diff
(99.9 %id)
DA390602 thalamus .a 21 to 532 2 to 513   capped   512/512
(100 %)
1 diff
(99.9 %id)
DA390712 thalamus .a 21 to 596 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA416877 thalamus .a 21 to 327 2 to 308   capped   307/307
(100 %)
0 diff
(100 %id)
BX648317 human uterus .a 21 to 3480 1 to 3460 F9S A93T available from DKFZ, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 3460/3460
(100 %)
9 diff
(99.8 %id)
DA419126 cord Blood .a 21 to 562 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA436688 tongue, tumor tissue .a 21 to 588 2 to 569   capped   568/577
(98 %)
2 diff
(99.7 %id)
DA458362 tongue, tumor tissue .a 21 to 581 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA460968 tongue, tumor tissue .a 21 to 575 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA461043 tongue, tumor tissue .a 21 to 571 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA494785 brain .a 21 to 580 2 to 561   capped   560/562
(99 %)
1 diff
(99.9 %id)
DA509417 brain .a 21 to 588 2 to 570   capped   569/578
(98 %)
4 diff
(99.4 %id)
DA724455   .a 21 to 574 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA774515 brain .a 21 to 576 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA774542 brain .a 21 to 573 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA777973 brain .a 21 to 587 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA804349 brain .a 21 to 583 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA805294 brain .a 21 to 577 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA858816 placenta .a 21 to 527 2 to 508   capped   507/507
(100 %)
0 diff
(100 %id)
DA860069 placenta .a 21 to 582 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA995541 synovial membrane tissue from rheumatioidarthritis .a 21 to 583 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB077594 testis .a 21 to 594 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB079767 testis .a 21 to 546 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DB092610 testis .a 21 to 566 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB133022 thymus .a 21 to 570 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB162871 thymus .a 21 to 618 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DB165793 thymus .a 21 to 620 2 to 601   capped   600/600
(100 %)
0 diff
(100 %id)
DB222676 trachea .a 21 to 554 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
AK096340   .a 22 to 3480 1 to 3457 F319S S351G L449* available from FLJ,   3457/3457
(100 %)
12 diff
(99.7 %id)
BC109026 PCR rescued clones .a 22 to 2700 1 to 2679 exact tiling clone,   2679/2679
(100 %)
2 diff
(100.0 %id)
BC109027 PCR rescued clones .a 22 to 2700 1 to 2680 exact     2680/2680
(100 %)
3 diff
(99.9 %id)
DA107954 cerebellum .a 22 to 517 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
BI560586 testis .a 22 to 720 1 to 736       605/736
(82 %)
43 diff
(94.2 %id)
DA186456 amygdala .a 23 to 570 2 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
DA193347 amygdala .a 23 to 610 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA196020 amygdala .a 23 to 584 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA196934 amygdala .a 23 to 586 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA217235 brain .a 23 to 555 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA217478 brain .a 23 to 557 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
DA221232 brain .a 23 to 505 2 to 484   capped   483/483
(100 %)
1 diff
(99.8 %id)
DA406555 thalamus .a 23 to 578 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA437727 tongue, tumor tissue .a 23 to 606 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA454423 tongue, tumor tissue .a 23 to 613 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DA459922 tongue, tumor tissue .a 23 to 574 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA461931 tongue, tumor tissue .a 23 to 553 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA709125   .a 23 to 567 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA741086   .a 23 to 595 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA767774 tongue .a 23 to 594 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA768541 brain .a 23 to 520 2 to 501   capped   500/501
(99 %)
3 diff
(99.5 %id)
DA785850 brain .a 23 to 600 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA801952 brain .a 23 to 489 2 to 468   capped   467/467
(100 %)
0 diff
(100 %id)
DA801978 brain .a 23 to 497 2 to 476   capped   475/475
(100 %)
0 diff
(100 %id)
DA868417 Prostate .a 23 to 587 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA994575 synovial membrane tissue from rheumatioidarthritis .a 23 to 561 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DB148542 thymus .a 23 to 564 2 to 544   capped   543/543
(100 %)
3 diff
(99.5 %id)
DB213341 trachea .a 23 to 580 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB286534 uterus .a 23 to 573 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA413141 thalamus .a 25 to 578 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA451207 tongue, tumor tissue .a 26 to 588 2 to 564   capped   563/565
(99 %)
2 diff
(99.7 %id)
DA213403 brain .a 27 to 585 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA411648 thalamus .a 27 to 581 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DB137355 thymus .a 27 to 560 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DB212634 trachea .a 27 to 585 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
TI_44349574   .a 30 to 720 93 to 820       663/820
(80 %)
86 diff
(89.6 %id)
DA698165   .a 30 to 597 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB145515 thymus .a 30 to 586 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB204924 trachea .a 30 to 602 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BM465584 eye, retinoblastoma .a 34 to 868 1 to 845       845/1094
(77 %)
24 diff
(97.9 %id)
BM464607 lymph, lymphoma, cell line .a 37 to 964 1 to 931       931/1094
(85 %)
13 diff
(98.9 %id)
AL521025 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 38 to 965 1 to 927       927/927
(100 %)
7 diff
(99.3 %id)
BI757302 brain .a 38 to 877 1 to 844       844/845
(99 %)
16 diff
(98.2 %id)
TI_57220514   .a 38 to 877 28 to 871       844/872
(96 %)
21 diff
(97.6 %id)
AK292893 trachea .a 57 to 1862 1 to 1806 exact     1806/1806
(100 %)
2 diff
(99.9 %id)
TI_57221047   .a 63 to 871 68 to 879       812/885
(91 %)
17 diff
(98.1 %id)
BI755922 brain .a 69 to 871 1 to 806       806/812
(99 %)
14 diff
(98.3 %id)
BM474177 leiomyosarcoma, uterus .a 74 to 966 1 to 899       899/962
(93 %)
11 diff
(98.9 %id)
BG823087 adenocarcinoma cell line, colon .a 160 to 876 1 to 721       721/722
(99 %)
11 diff
(98.5 %id)
AB449909 brain .a 166 to 1683 1 to 1518 exact     1518/1518
(100 %)
1 diff
(100.0 %id)
DB157335 thymus .a 291 to 864 2 to 576   capped   575/577
(99 %)
4 diff
(99.4 %id)
AW997389 breast_normal .a 383 to 893 1 to 507       507/509
(99 %)
18 diff
(96.5 %id)
CD641961 pooled .a 541 to 1242 1 to 697       697/706
(98 %)
20 diff
(97.2 %id)
CN423653 embryonic stem cells, cell lines H1, H7, andH9 .a 596 to 1283 1 to 690   tiling clone,   690/690
(100 %)
3 diff
(99.6 %id)
CN423652 embryonic stem cells, cell lines H1, H7, andH9 .a 644 to 1230 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
AW864776 stomach_normal .a 668 to 933 272 to 6       267/272
(98 %)
1 diff
(99.7 %id)
BX473069   .a 686 to 1262 1 to 575       575/575
(100 %)
7 diff
(98.8 %id)
BF881713 lung_tumor .a 696 to 1038 366 to 16     Submitted on the opposite strand 354/367
(96 %)
20 diff
(94.6 %id)
BX391039   .a 765 to 1535 1 to 772       772/772
(100 %)
21 diff
(97.3 %id)
AL561945 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 2462 to 3451 991 to 1       991/999
(99 %)
3 diff
(99.7 %id)
BC047658 testis .b 1 to 3522 1 to 3522 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 3522/3522
(100 %)
3 diff
(100.0 %id)
DA100749 cerebellum .b 2 to 572 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA152243 amygdala .b 2 to 230 2 to 230   capped   229/229
(100 %)
0 diff
(100 %id)
DA166425 amygdala .b 2 to 572 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB018244 esophageal, tumor tissue .b 2 to 570 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB098147 testis .b 2 to 572 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA735169   .b 4 to 768 2 to 765   capped   764/767
(99 %)
4 diff
(99.5 %id)
BG719838 testis .b 5 to 781 1 to 774       774/775
(99 %)
16 diff
(98.0 %id)
BM906468 ovary (pool of 3) .b 12 to 819 15 to 823       807/1082
(74 %)
22 diff
(98.0 %id)
BI160792 epithelioid carcinoma cell line, Pancreas .b 14 to 710 1 to 698       698/699
(99 %)
16 diff
(97.8 %id)
DR003100 fetal brain .b 18 to 534 9 to 525       517/525
(98 %)
6 diff
(98.9 %id)
BF797844 lymph, lymphoma, cell line .b 20 to 656 1 to 638       638/854
(74 %)
21 diff
(97.6 %id)
BQ438303 leiomyosarcoma, uterus .b 20 to 832 1 to 819       819/870
(94 %)
13 diff
(98.6 %id)
DB094623 testis .b 22 to 525 2 to 505   capped   504/504
(100 %)
0 diff
(100 %id)
DB094643 testis .b 22 to 576 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DB224232 trachea .b 39 to 628 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DB212955 trachea .b 53 to 599 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA723041   .b 78 to 635 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
CA389116 eye, RPE/choroid .b 93 to 534 1 to 442     Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 442/442
(100 %)
4 diff
(99.1 %id)
DA577211   .b 129 to 702 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA446935 tongue, tumor tissue .b 256 to 819 2 to 565   capped   564/572
(98 %)
2 diff
(99.7 %id)
DA183015 amygdala .b 264 to 819 2 to 557   capped   556/564
(98 %)
3 diff
(99.5 %id)
BI002935 head_normal .b 306 to 622 323 to 9       315/325
(96 %)
8 diff
(97.6 %id)
BF850959 lung_normal .b 341 to 774 1 to 435       435/435
(100 %)
10 diff
(97.8 %id)
DA163376 amygdala .b 980 to 1558 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
BC063523 Bone, osteosarcoma .b 984 to 3521 1 to 2538   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 2538/2538
(100 %)
1 diff
(100.0 %id)
BG109316 Bone, osteosarcoma, cell line .b 984 to 1705 1 to 723   available from MGC,   723/724
(99 %)
10 diff
(98.7 %id)
CR749710 melanoma (MeWo cell line) .b 1006 to 3522 99 to 2615   available from DKFZ, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 2517/2615
(96 %)
11 diff
(99.6 %id)
BG765323 melanotic melanoma, high MDR (cell line), skin .b 1006 to 1596 21 to 623       603/625
(96 %)
53 diff
(91.6 %id)
AK000344   .b 1087 to 3522 1 to 2437   available from FLJ, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 2437/2437
(100 %)
2 diff
(100.0 %id)
BC002720 Uterus, endometrium adenocarcinoma .b 1134 to 3522 1 to 2389   available from MGC, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 2389/2389
(100 %)
2 diff
(100.0 %id)
BE393255 endometrium, adenocarcinoma cell line, uterus .b 1153 to 1828 1 to 679   available from MGC,   679/686
(98 %)
27 diff
(96.1 %id)
AA236607 germinal center B cell .b 1274 to 1785 1 to 510     Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 510/510
(100 %)
2 diff
(99.7 %id)
DA842283 placenta .b 1311 to 1874 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
AW249433.
matches multiple genes
lung, small cell carcinoma .b 1331 to 1745 1 to 415     also hits gene TSSC4 415/415
(100 %)
6 diff
(98.6 %id)
BC000291 Lung, small cell carcinoma .b 1340 to 3522 1 to 2183   available from MGC, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 2183/2183
(100 %)
1 diff
(100.0 %id)
BC000743 Lung, small cell carcinoma .b 1340 to 3522 1 to 2183   available from MGC, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 2183/2183
(100 %)
1 diff
(100.0 %id)
BC001927 Lung, small cell carcinoma .b 1340 to 3522 1 to 2183   available from MGC, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 2183/2183
(100 %)
1 diff
(100.0 %id)
BF219713 lung, small cell carcinoma .b 1359 to 1916 1 to 561   available from MGC,   561/561
(100 %)
3 diff
(99.5 %id)
BF884619 lung_tumor .b 1385 to 1560 20 to 200       181/219
(82 %)
14 diff
(93.7 %id)
BF001299 Prostate .b 1387 to 1594 208 to 1       208/208
(100 %)
15 diff
(92.8 %id)
AA432211   .b 1430 to 1810 1 to 380       380/380
(100 %)
2 diff
(99.5 %id)
CX164691 human embryonic stem cells differentiated toan early endodermal cell type .b 1551 to 2291 1 to 739       739/739
(100 %)
4 diff
(99.5 %id)
BY798548 eye .b 1557 to 2182 1 to 625       625/625
(100 %)
1 diff
(99.9 %id)
CV569785 cornea, eye .b 1568 to 2166 1 to 599       599/599
(100 %)
0 diff
(100 %id)
BP306184   .b 1585 to 2150 1 to 565       565/565
(100 %)
7 diff
(98.8 %id)
BI860405 breast, mammary adenocarcinoma, cell line .b 1645 to 2163 1 to 522       522/617
(84 %)
15 diff
(97.6 %id)
TI_57187963   .b 1645 to 2163 56 to 577       522/672
(77 %)
15 diff
(97.8 %id)
BF858204 prostate_tumor .b 1683 to 1929 251 to 5     Submitted on the opposite strand 247/251
(98 %)
0 diff
(100 %id)
BE164875 head_neck .b 1698 to 1922 243 to 19     Submitted on the opposite strand 225/243
(92 %)
0 diff
(100 %id)
BE164928 head_neck .b 1698 to 1922 243 to 19     Submitted on the opposite strand 225/243
(92 %)
0 diff
(100 %id)
BG423027 Kidney, renal cell adenocarcinoma .b 1760 to 2480 1 to 721       721/852
(84 %)
30 diff
(96.5 %id)
BG105052 adrenal cortex carcinoma, cell line, adrenal gland .b 1776 to 2539 1 to 766       766/1115
(68 %)
33 diff
(97.1 %id)
BX372459   .b 1793 to 2668 871 to 1       871/943
(92 %)
44 diff
(95.4 %id)
BQ637987 eye, retina .b 1900 to 2529 1 to 630       630/630
(100 %)
0 diff
(100 %id)
TI_57165915   .b 1912 to 2726 29 to 848       820/849
(96 %)
18 diff
(97.9 %id)
BI833218 pooled pancreas and spleen .b 1913 to 2726 1 to 819       819/820
(99 %)
18 diff
(97.9 %id)
BQ109417 pooled pancreas and spleen .b 1926 to 2610 1 to 679       679/679
(100 %)
8 diff
(98.9 %id)
H11991 whole brain .b 2008 to 2336 1 to 329       329/329
(100 %)
4 diff
(98.8 %id)
BI012866 lung_tumor .b 2024 to 2529 502 to 1       502/502
(100 %)
17 diff
(96.7 %id)
BG990150 head_neck .b 2026 to 2515 1 to 493       493/493
(100 %)
41 diff
(91.7 %id)
DB367370   .b 2061 to 2601 540 to 1       540/540
(100 %)
10 diff
(98.2 %id)
H10111 whole brain .b 2084 to 2511 1 to 440     Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 440/475
(92 %)
17 diff
(96.5 %id)
BI333073 cervical carcinoma cell line, cervix .b 2110 to 2865 1 to 764       764/982
(77 %)
15 diff
(98.5 %id)
BF037390 adenocarcinoma, ovary .b 2223 to 2802 1 to 579       579/580
(99 %)
5 diff
(99.2 %id)
BG984971 colon_normal .b 2297 to 2402 119 to 14       106/119
(89 %)
0 diff
(100 %id)
BG697130 skin .b 2328 to 2831 182 to 686       505/689
(73 %)
9 diff
(98.7 %id)
CB159422 Liver .b 2329 to 2833 505 to 1     Submitted on the opposite strand 505/505
(100 %)
0 diff
(100 %id)
BX364280   .b 2416 to 3494 1066 to 1       1066/1066
(100 %)
16 diff
(98.5 %id)
CN303477 embryonic stem cells, DMSO-treated H9 cellline .b 2465 to 3146 8 to 691       684/691
(98 %)
6 diff
(99.2 %id)
BX355444 Neuroblastoma Cot 50-normalized .b 2473 to 3500 1019 to 1       1019/1020
(99 %)
40 diff
(96.1 %id)
BM458618 lymph, lymphoma, cell line .b 2491 to 3177 17 to 702       686/711
(96 %)
7 diff
(99.1 %id)
CD674134 eye, lens .b 2530 to 3008 1 to 479       479/479
(100 %)
0 diff
(100 %id)
BG251878 adenocarcinoma, cell line, Liver .b 2540 to 3168 1 to 619       619/619
(100 %)
11 diff
(98.3 %id)
BM719850 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2576 to 3020 1 to 445       445/445
(100 %)
1 diff
(99.8 %id)
TI_159685222   .b 2639 to 3522 905 to 32   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 874/992
(88 %)
12 diff
(98.8 %id)
H61591 liver and spleen .b 2721 to 3095 1 to 377       377/382
(98 %)
4 diff
(99.0 %id)
AA424773 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2742 to 3160 1 to 418   fully sequenced,   418/418
(100 %)
2 diff
(99.6 %id)
BG105709 adrenal cortex carcinoma, cell line, adrenal gland .b 2746 to 3438 1 to 691       691/762
(90 %)
8 diff
(99.0 %id)
BQ000886 lung, Metastatic Chondrosarcoma .b 2755 to 3522 786 to 19   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 768/768
(100 %)
4 diff
(99.5 %id)
AA455390 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2761 to 3181 1 to 404       404/404
(100 %)
22 diff
(94.6 %id)
CA449829 Chondrosarcoma, Left Pelvis .b 2814 to 3522 727 to 19   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 709/709
(100 %)
3 diff
(99.6 %id)
DB508000 testis .b 2857 to 3522 1 to 665     Submitted on the opposite strand 665/665
(100 %)
10 diff
(98.5 %id)
AW169302 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 2880 to 3070 191 to 1       191/191
(100 %)
1 diff
(99.5 %id)
CA389115 eye, RPE/choroid .b 2901 to 3428 545 to 18   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 528/528
(100 %)
1 diff
(99.9 %id)
CA503334 Human Lung Epithelial cells, lung .b 2936 to 3522 606 to 19   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 588/597
(98 %)
1 diff
(99.9 %id)
AA576949 colon, colon tumor RER+ .b 2940 to 3523 585 to 2       584/585
(99 %)
0 diff
(100 %id)
CA502751 Human Lung Epithelial cells, lung .b 2945 to 3522 598 to 19   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 580/580
(100 %)
5 diff
(99.2 %id)
AA699660 liver and spleen .b 2973 to 3522 550 to 1       550/550
(100 %)
3 diff
(99.5 %id)
AI952855 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 2991 to 3521 524 to 2       523/705
(74 %)
0 diff
(100 %id)
R61538 whole brain .b 2996 to 3521 546 to 10       537/549
(97 %)
0 diff
(100 %id)
BM725980 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3022 to 3522 1 to 501       501/501
(100 %)
0 diff
(100 %id)
AI925352 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 3027 to 3522 496 to 1       496/496
(100 %)
3 diff
(99.4 %id)
AI871238 anaplastic oligodendroglioma, brain .b 3048 to 3523 480 to 5       476/480
(99 %)
0 diff
(100 %id)
AI376354   .b 3054 to 3523 472 to 3       470/479
(98 %)
0 diff
(100 %id)
AI937357 anaplastic oligodendroglioma, brain .b 3054 to 3523 474 to 5       470/474
(99 %)
0 diff
(100 %id)
BM149676 leukopheresis .b 3057 to 3522 483 to 18   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 466/467
(99 %)
0 diff
(100 %id)
AA969388 pooled .b 3058 to 3523 467 to 3       465/467
(99 %)
0 diff
(100 %id)
BM750148 stomach .b 3062 to 3521 1 to 460   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 460/460
(100 %)
0 diff
(100 %id)
AA370054 Prostate .b 3064 to 3351 1 to 286       286/286
(100 %)
1 diff
(99.7 %id)
N23188 melanocyte .b 3084 to 3522 438 to 1       438/439
(99 %)
4 diff
(99.1 %id)
AI291150 carcinoid, lung .b 3094 to 3522 440 to 12   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 429/429
(100 %)
2 diff
(99.6 %id)
AA687828 normal prostate, Prostate .b 3095 to 3522 428 to 1       428/428
(100 %)
1 diff
(99.8 %id)
AA678105 liver and spleen .b 3096 to 3522 426 to 1       426/426
(100 %)
3 diff
(99.3 %id)
AA470892 colon .b 3100 to 3523 425 to 2       424/425
(99 %)
0 diff
(100 %id)
AI246672 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3100 to 3521 422 to 1       422/422
(100 %)
0 diff
(100 %id)
AI278672 carcinoid, lung .b 3100 to 3521 422 to 1       422/422
(100 %)
0 diff
(100 %id)
H10057 whole brain .b 3106 to 3520 437 to 13   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 425/486
(87 %)
15 diff
(97.0 %id)
AW872817 squamous cell carcinoma, tongue .b 3109 to 3523 418 to 4       415/418
(99 %)
0 diff
(100 %id)
AI377056 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3124 to 3521 398 to 1       398/398
(100 %)
4 diff
(99.0 %id)
AA424906 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3130 to 3523 394 to 1   fully sequenced,   394/394
(100 %)
2 diff
(99.5 %id)
AI382874 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3131 to 3521 392 to 1       392/392
(100 %)
1 diff
(99.8 %id)
AA932170 carcinoid, lung .b 3156 to 3521 366 to 1       366/366
(100 %)
2 diff
(99.5 %id)
AI803994 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3188 to 3523 338 to 3       336/338
(99 %)
0 diff
(100 %id)
H11754 whole brain .b 3201 to 3521 337 to 7       331/338
(97 %)
0 diff
(100 %id)
AA429601   .b 3206 to 3521 324 to 9       316/324
(97 %)
0 diff
(100 %id)
AI279972 pooled .b 3208 to 3523 316 to 1       316/316
(100 %)
0 diff
(100 %id)
AW043779 pooled .b 3208 to 3523 322 to 7       316/322
(98 %)
0 diff
(100 %id)
AA237024 germinal center B cell .b 3227 to 3522 307 to 12   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 296/296
(100 %)
1 diff
(99.7 %id)
AA456029 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3227 to 3522 295 to 1       295/295
(100 %)
2 diff
(99.4 %id)
AW629346 pooled .b 3243 to 3523 289 to 9       281/289
(97 %)
0 diff
(100 %id)
AI366854 adenocarcinoma, colon .b 3245 to 3522 296 to 19   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 278/278
(100 %)
0 diff
(100 %id)
AA335499 epididymis .b 3262 to 3522 1 to 261       261/261
(100 %)
0 diff
(100 %id)
CK904001 Islets of Langerhans, Pancreas .b 3278 to 3522 1 to 245   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 245/245
(100 %)
0 diff
(100 %id)
BM053100 Islets of Langerhans, Pancreas .b 3294 to 3522 1 to 229   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 229/229
(100 %)
0 diff
(100 %id)
AI673107 colon, colonic mucosa from 3 patients with Crohn'sdisease .b 3314 to 3522 225 to 16   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 210/211
(99 %)
2 diff
(99.1 %id)
AA723807 pooled .b 3339 to 3519 181 to 1       181/181
(100 %)
0 diff
(100 %id)
CA455546 mixed (pool of 40 RNAs) .b 3339 to 3522 1 to 184       184/220
(83 %)
2 diff
(99.1 %id)
AA948606 pooled .b 3375 to 3523 157 to 9       149/157
(94 %)
0 diff
(100 %id)
EC441015 Prostate .b 3386 to 3520 136 to 4       133/136
(97 %)
0 diff
(100 %id)
AY927466   .c 1 to 944 1 to 944 exact tiling clone,   944/944
(100 %)
4 diff
(99.6 %id)
AW850466 colon .d 1 to 328 1 to 327       327/327
(100 %)
5 diff
(98.5 %id)
AW850480 colon .d 1 to 400 1 to 399   tiling clone,   399/399
(100 %)
1 diff
(99.8 %id)
DA378368 thalamus .d 104 to 661 2 to 559   tiling clone, capped   558/558
(100 %)
1 diff
(99.9 %id)
BX642044   .d 394 to 784 1 to 391   tiling clone,   391/391
(100 %)
0 diff
(100 %id)
BX642045   .d 2359 to 3028 670 to 1   tiling clone,   670/670
(100 %)
2 diff
(99.8 %id)
DB311284 thalamus .d 2823 to 3041 220 to 1   tiling clone,   220/220
(100 %)
1 diff
(99.6 %id)
AY927467   .e 1 to 1008 1 to 1008 exact tiling clone,   1008/1008
(100 %)
0 diff
(100 %id)
AI969883 Prostate .e 670 to 1088 419 to 1   tiling clone,   419/419
(100 %)
2 diff
(99.6 %id)
DA370406 thalamus .f 1 to 552 8 to 559 exact tiling clone, capped   558/558
(100 %)
1 diff
(99.9 %id)
DA450791 tongue, tumor tissue .g 1 to 568 6 to 574 exact tiling clone, capped   573/573
(100 %)
1 diff
(99.9 %id)
BQ707954 Spleen .h 1 to 907 1 to 907 exact tiling clone,   907/908
(99 %)
12 diff
(98.7 %id)
CF136691 lymph .i 1 to 420 3 to 422 exact tiling clone,   422/422
(100 %)
5 diff
(98.9 %id)
TI_154165854   .i 4 to 566 96 to 658   tiling clone,   563/815
(69 %)
2 diff
(99.8 %id)
DA726945   .j 1 to 560 2 to 561 exact tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
AK021840 whole embryo, mainly head .k-u 1 to 1419 2 to 1418 exact tiling clone, available from FLJ,   1418/1418
(100 %)
4 diff
(99.8 %id)
AU119478 whole embryo, mainly head .k-u 1 to 750 2 to 746 exact capped   745/745
(100 %)
11 diff
(98.6 %id)
AI076363 liver and spleen .k-u 913 to 1420 509 to 1   tiling clone,   509/509
(100 %)
1 diff
(99.9 %id)
AA001228 liver and spleen .k-u 931 to 1331 1 to 404       404/404
(100 %)
4 diff
(99.1 %id)
AU145808 whole embryo, mainly head .k-u 975 to 1419 445 to 1       445/446
(99 %)
11 diff
(97.6 %id)
F12294 brain, total brain .l-u 1 to 340 1 to 340   tiling clone,   340/340
(100 %)
4 diff
(98.9 %id)
F12213 brain, total brain .l-u 3 to 332 1 to 330   tiling clone,   330/330
(100 %)
5 diff
(98.5 %id)
T66272 whole brain .l-u 25 to 484 1 to 467   tiling clone,   467/467
(100 %)
12 diff
(97.5 %id)
T66261 whole brain .l-u 28 to 604 1 to 580   tiling clone, Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 580/580
(100 %)
65 diff
(88.8 %id)
BX103611 whole brain .l-u 799 to 1206 428 to 19 V18X tiling clone,   410/428
(95 %)
0 diff
(100 %id)
T66185 whole brain .l-u 820 to 1211 394 to 4 T8X C43X tiling clone,   391/396
(98 %)
0 diff
(100 %id)
T66178 whole brain .l-u 839 to 1210 386 to 15 F5X T8X T29X I39X C43X ... AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 372/372
(100 %)
3 diff
(99.2 %id)
F09843 brain, total brain .l-u 855 to 1210 356 to 1 S41X     356/356
(100 %)
1 diff
(99.8 %id)
F09919 brain, total brain .l-u 889 to 1210 322 to 1       322/322
(100 %)
1 diff
(99.7 %id)
BU957951 mixed (pool of 40 RNAs) .m 1 to 250 7 to 256 exact     256/292
(87 %)
4 diff
(98.7 %id)
DA903304   .m 1 to 254 6 to 260 exact tiling clone, capped   267/272
(98 %)
7 diff
(97.5 %id)
BG109248 Bone, osteosarcoma, cell line .m 9 to 249 1 to 240   tiling clone, AAA   240/240
(100 %)
3 diff
(98.8 %id)
BG983380 colon_normal .n-u 1 to 208 1 to 208 W11C C12S D18N G19V Q21H ... tiling clone,   208/246
(84 %)
18 diff
(92.7 %id)
BX092936 whole brain Gene TBC1D22B, variant not shown         This clone was ignored    
BX364281   Gene TBC1D22B, variant not shown         This clone was ignored    
AA480031 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene TBC1D22B, variant not shown         Suspected internal deletion, this clone was ignored    
AA524572 colon Gene TBC1D22B, variant not shown         Suspected internal deletion, this clone was ignored    
CK005539 brain/CNS, Human Brain - Frontal Cortex Gene TBC1D22B, variant not shown         Suspected internal deletion, this clone was ignored    
DA810371 brain Gene TBC1D22B, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB274899 uterus Gene TBC1D22B, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l-u, .m, .n-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C