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Gene C6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
125 supporting clones for gene C6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB080010 testis .a 1 to 569 2 to 572   tiling clone, capped   571/571
(100 %)
2 diff
(99.7 %id)
BC035723 Ovary, pooled from 3 adults .a 48 to 3705 1 to 3658 A128E tiling clone, available from MGC, AAA   3658/3658
(100 %)
3 diff
(100.0 %id)
NM_001115131.1   .a 48 to 3708 1 to 3661 exact RefSeq,   3661/3661
(100 %)
1 diff
(100.0 %id)
BM808077 ovary (pool of 3) .a 52 to 900 21 to 875       855/1112
(76 %)
23 diff
(98.0 %id)
BP259559 heart .a 204 to 784 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DB093740 testis .a 229 to 778 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
TI_1948087610   .a 310 to 1240 134 to 1062       929/1371
(67 %)
23 diff
(98.4 %id)
TI_1948087773   .a 310 to 1349 134 to 1167       1034/1374
(75 %)
28 diff
(98.0 %id)
AB126592   .a 313 to 3117 1 to 2805   tiling clone,   2805/2805
(100 %)
7 diff
(99.8 %id)
CV030886 mixed .a 313 to 998 1 to 686       686/686
(100 %)
3 diff
(99.6 %id)
AV661068 corresponding non cancerous liver tissue .a 677 to 1062 1 to 386     Submitted on the opposite strand 386/386
(100 %)
10 diff
(97.5 %id)
AV653463 corresponding non cancerous liver tissue .a 685 to 1062 1 to 378     Submitted on the opposite strand 378/378
(100 %)
0 diff
(100 %id)
AV656513 corresponding non cancerous liver tissue .a 813 to 1183 1 to 371     Submitted on the opposite strand 371/371
(100 %)
0 diff
(100 %id)
BX643450   .a 825 to 1359 1 to 535       535/535
(100 %)
3 diff
(99.5 %id)
N77085 liver and spleen .a 1167 to 1287 1 to 121       121/126
(96 %)
1 diff
(99.3 %id)
BG428261 Kidney .a 1174 to 1935 1 to 755       755/798
(94 %)
27 diff
(96.7 %id)
AV660713 corresponding non cancerous liver tissue .a 1392 to 1817 1 to 426     Submitted on the opposite strand 426/426
(100 %)
1 diff
(99.8 %id)
CB162765 Liver .a 1556 to 2155 600 to 1     Submitted on the opposite strand 600/600
(100 %)
0 diff
(100 %id)
DA638079 Liver .a 1759 to 2326 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
AV688045 hepatocellular carcinoma .a 1880 to 2280 1 to 394       394/395
(99 %)
7 diff
(98.3 %id)
AV693676 hepatocellular carcinoma .a 1880 to 2280 1 to 394       394/395
(99 %)
7 diff
(98.3 %id)
BG618889 Liver .a 2002 to 2660 1 to 659       659/659
(100 %)
1 diff
(99.9 %id)
T79495 liver and spleen .a 2017 to 2359 1 to 349       349/350
(99 %)
9 diff
(97.5 %id)
CB156001 Liver .a 2027 to 2635 1 to 611       609/611
(99 %)
3 diff
(99.6 %id)
TI_1948088126   .a 2163 to 3131 1074 to 111       964/1325
(72 %)
15 diff
(98.9 %id)
TI_1948087774   .a 2169 to 3131 1074 to 114       961/1319
(72 %)
19 diff
(98.6 %id)
TI_1948087952   .a 2196 to 3131 1045 to 114       932/1362
(68 %)
27 diff
(98.1 %id)
BI010469 lung_normal .a 2249 to 2499 1 to 246       246/260
(94 %)
11 diff
(95.8 %id)
BI010472 lung_normal .a 2252 to 2854 9 to 607       599/607
(98 %)
13 diff
(97.9 %id)
T58822 Liver .a 2263 to 2639 1 to 383       383/384
(99 %)
7 diff
(98.2 %id)
BG564936 Liver .a 2269 to 3061 1 to 796       796/796
(100 %)
20 diff
(97.5 %id)
TI_1948087611   .a 2275 to 3131 965 to 113       853/1332
(64 %)
7 diff
(99.5 %id)
T28647 gallbladder .a 2275 to 2565 1 to 295       299/295
(101 %)
8 diff
(97.3 %id)
BG564782 Liver .a 2280 to 3033 1 to 760       760/760
(100 %)
9 diff
(98.9 %id)
AV655207 corresponding non cancerous liver tissue .a 2310 to 2741 1 to 378     Submitted on the opposite strand 355/379
(93 %)
10 diff
(97.4 %id)
H80583 liver and spleen .a 2336 to 2565 1 to 230       230/230
(100 %)
4 diff
(98.3 %id)
BQ086342 Islets of Langerhans, Pancreas .a 2381 to 2832 1 to 452       452/452
(100 %)
1 diff
(99.8 %id)
CK822997 Islets of Langerhans, Pancreas .a 2381 to 2968 1 to 588       588/588
(100 %)
0 diff
(100 %id)
W40350 lung .a 2416 to 2617 14 to 214       200/214
(93 %)
6 diff
(97.2 %id)
BG568235 Liver .a 2462 to 2972 1 to 510       510/510
(100 %)
2 diff
(99.7 %id)
BG566016 Liver .a 2477 to 3174 1 to 698       698/703
(99 %)
1 diff
(99.9 %id)
AV653728 corresponding non cancerous liver tissue .a 2521 to 2924 1 to 404     Submitted on the opposite strand 404/404
(100 %)
2 diff
(99.6 %id)
TI_149300895   .a 2614 to 3509 959 to 74   AAA   886/990
(89 %)
17 diff
(98.3 %id)
BG563179 Liver .a 2616 to 3228 1 to 618       618/618
(100 %)
5 diff
(99.2 %id)
W90194 liver and spleen .a 2620 to 2984 1 to 373       373/373
(100 %)
12 diff
(96.8 %id)
BG541334 lung .a 2640 to 3269 1 to 625       625/805
(77 %)
9 diff
(98.9 %id)
BG564395 Liver .a 2640 to 3457 1 to 823       823/826
(99 %)
16 diff
(98.1 %id)
N72799 liver and spleen .a 2651 to 2816 1 to 166       166/170
(97 %)
2 diff
(98.9 %id)
BX101649 liver and spleen .a 2652 to 3349 1 to 699       699/699
(100 %)
1 diff
(99.9 %id)
H94238 liver and spleen .a 2693 to 2844 1 to 152       152/157
(96 %)
1 diff
(99.4 %id)
AI760789 2 pooled tumors (clear cell type), Kidney .a 2706 to 3503 802 to 4       799/806
(99 %)
9 diff
(98.9 %id)
TI_149296973   .a 2715 to 3501 862 to 87   AAA   776/945
(82 %)
17 diff
(98.3 %id)
H94220 liver and spleen .a 2724 to 3028 1 to 321   fully sequenced,   321/321
(100 %)
4 diff
(98.8 %id)
H38176 liver and spleen .a 2733 to 3184 1 to 465       465/465
(100 %)
17 diff
(96.4 %id)
CB162105 Liver .a 2747 to 3100 275 to 628       354/628
(56 %)
5 diff
(99.3 %id)
BM982118 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2809 to 3501 708 to 17   AAA   692/692
(100 %)
5 diff
(99.3 %id)
AA705186 liver and spleen .a 2816 to 3474 655 to 1       655/661
(99 %)
9 diff
(98.7 %id)
BM976878 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2834 to 3509 694 to 19   AAA   676/676
(100 %)
3 diff
(99.6 %id)
AI583990 adenocarcinoma, Pancreas .a 2870 to 3501 627 to 1       627/627
(100 %)
14 diff
(97.8 %id)
BF093586 testis_normal .a 2933 to 3418 491 to 8       484/504
(96 %)
0 diff
(100 %id)
BQ102416 Islets of Langerhans, Pancreas .a 2933 to 3503 572 to 2       571/576
(99 %)
0 diff
(100 %id)
CK822996 Islets of Langerhans, Pancreas .a 2933 to 3503 572 to 2       571/581
(98 %)
0 diff
(100 %id)
BG459985   .a 2939 to 3455 516 to 1     Submitted on the opposite strand 516/520
(99 %)
13 diff
(97.5 %id)
AV700722 hepatocellular carcinoma .a 2947 to 3487 542 to 1       542/542
(100 %)
17 diff
(96.9 %id)
AV649845 corresponding non cancerous liver tissue .a 2957 to 3384 1 to 428     Submitted on the opposite strand 428/428
(100 %)
0 diff
(100 %id)
AI040604 liver and spleen .a 2969 to 3463 493 to 1       493/493
(100 %)
3 diff
(99.4 %id)
H92990 liver and spleen .a 2998 to 3501 502 to 1   fully sequenced,   502/502
(100 %)
5 diff
(99.1 %id)
N52516 liver and spleen .a 3001 to 3463 467 to 2       466/467
(99 %)
0 diff
(100 %id)
AI634943 adenocarcinoma, Pancreas .a 3005 to 3704 719 to 20   AAA   700/700
(100 %)
31 diff
(95.6 %id)
H48919 liver and spleen .a 3009 to 3460 459 to 1       459/460
(99 %)
18 diff
(96.1 %id)
AV653370 corresponding non cancerous liver tissue .a 3010 to 3384 1 to 375     Submitted on the opposite strand 375/375
(100 %)
0 diff
(100 %id)
AV660521 corresponding non cancerous liver tissue .a 3032 to 3384 1 to 353     Submitted on the opposite strand 353/353
(100 %)
0 diff
(100 %id)
H53580 liver and spleen .a 3045 to 3452 414 to 1       414/415
(99 %)
10 diff
(97.6 %id)
N59396 liver and spleen .a 3046 to 3499 459 to 5       455/459
(99 %)
0 diff
(100 %id)
T58754 Liver .a 3054 to 3501 456 to 1       456/461
(98 %)
16 diff
(96.6 %id)
W90076 liver and spleen .a 3068 to 3482 418 to 1       418/419
(99 %)
5 diff
(98.9 %id)
R99330 liver and spleen .a 3084 to 3462 388 to 4       385/393
(97 %)
0 diff
(100 %id)
H53062 liver and spleen .a 3097 to 3460 380 to 10       371/439
(84 %)
0 diff
(100 %id)
H93012 liver and spleen .a 3145 to 3515 371 to 1       371/371
(100 %)
1 diff
(99.8 %id)
CB162297 Liver .a 3157 to 3705 1 to 548   AAA   548/548
(100 %)
3 diff
(99.5 %id)
CB162304 Liver .a 3157 to 3705 1 to 548   AAA   548/548
(100 %)
3 diff
(99.5 %id)
H38175 liver and spleen .a 3169 to 3506 343 to 3       341/351
(97 %)
0 diff
(100 %id)
H58796 liver and spleen .a 3169 to 3445 285 to 7       279/305
(91 %)
0 diff
(100 %id)
N52393 liver and spleen .a 3179 to 3648 474 to 1   tiling clone,   474/474
(100 %)
6 diff
(98.8 %id)
R92965 liver and spleen .a 3201 to 3445 247 to 2       246/247
(99 %)
0 diff
(100 %id)
AI911872 adenocarcinoma, Pancreas .a 3232 to 3826 593 to 1   tiling clone,   593/593
(100 %)
5 diff
(99.2 %id)
N93857 lung .a 3291 to 3708 425 to 1       425/425
(100 %)
10 diff
(97.7 %id)
H80529 liver and spleen .a 3307 to 3672 370 to 1       370/370
(100 %)
13 diff
(96.5 %id)
DB066614 testis .b 1 to 526 6 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DB023684 testis .b 1 to 532 2 to 533   tiling clone, capped   532/532
(100 %)
0 diff
(100 %id)
NM_000065.2   .b 24 to 3629 1 to 3606 exact RefSeq,   3606/3606
(100 %)
1 diff
(100.0 %id)
DB164773 thymus .b 25 to 611 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DB184605 liver, tumor tissue .b 25 to 600 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA642358 Liver .b 27 to 664 2 to 639   capped   638/638
(100 %)
2 diff
(99.7 %id)
DB231999 trachea .b 37 to 624 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
BJ993386 hepatoblastoma .b 74 to 486 1 to 413       413/413
(100 %)
1 diff
(99.8 %id)
DA993869 synovial membrane tissue from rheumatioidarthritis .b 76 to 620 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DR003936 Liver .b 76 to 820 7 to 750       744/750
(99 %)
7 diff
(99.1 %id)
AK313673 hippocampus .b 77 to 3038 1 to 2962 A119E Q621*     2962/2962
(100 %)
4 diff
(99.9 %id)
DA334847 hippocampus .b 78 to 659 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
J05064   .b 79 to 3381 1 to 3303 exact tiling clone,   3303/3303
(100 %)
1 diff
(100.0 %id)
AK292509 testis .b 98 to 3436 1 to 3339 A119E V712A R743G     3339/3339
(100 %)
4 diff
(99.9 %id)
BP259451 heart .b 98 to 646 1 to 548       548/580
(94 %)
19 diff
(96.8 %id)
DA642942 Liver .b 99 to 664 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB080067 testis .b 99 to 671 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB081630 testis .b 99 to 653 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DB210920 trachea .b 99 to 730 2 to 632   capped   631/631
(100 %)
3 diff
(99.6 %id)
DB225277 trachea .b 99 to 640 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB275272 uterus .b 99 to 669 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA043648 bladder .b 161 to 733 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA641606 Liver .b 163 to 742 8 to 587   capped   580/580
(100 %)
2 diff
(99.7 %id)
J04506 Liver .b 168 to 1706 1 to 1539       1539/1539
(100 %)
1 diff
(100.0 %id)
J05024   .b 177 to 3629 1 to 3453 A119E     3453/3453
(100 %)
3 diff
(100.0 %id)
BJ993387 hepatoblastoma .b 3270 to 3717 448 to 1   tiling clone,   448/448
(100 %)
1 diff
(99.8 %id)
DA641203 Liver .c 1 to 529 2 to 530   tiling clone, capped   529/529
(100 %)
2 diff
(99.7 %id)
BF593268 Kidney .c 250 to 970 721 to 1   tiling clone,   721/721
(100 %)
7 diff
(99.1 %id)
AW135433   .c 505 to 970 483 to 18   AAA   466/466
(100 %)
1 diff
(99.8 %id)
DA824264 pericardium .d 1 to 558 2 to 559   tiling clone, capped   558/558
(100 %)
1 diff
(99.9 %id)
BM920147 pooled pancreas and spleen .d 31 to 1014 1 to 996 T95N V97S E98G H99T R100* tiling clone,   996/1059
(94 %)
28 diff
(97.4 %id)
AW950661   .e -8 to 688 1 to 697 exact tiling clone,   697/707
(98 %)
26 diff
(96.4 %id)
DB026861 testis .f 1 to 526 2 to 527 exact tiling clone, capped   526/526
(100 %)
0 diff
(100 %id)
J05063   .g-u 1 to 888 1 to 891   tiling clone,   891/891
(100 %)
5 diff
(99.5 %id)
BX502917 Liver .g-u 148 to 881 1 to 731   tiling clone,   731/731
(100 %)
7 diff
(99.1 %id)
DA643157 Liver .g-u 480 to 1053 2 to 575 exact tiling clone, capped   574/574
(100 %)
1 diff
(99.9 %id)
BG565116 Liver .h-u 1 to 739 1 to 739 F19S tiling clone,   739/757
(97 %)
15 diff
(98.1 %id)
AL692014   .i 1 to 483 8 to 490 exact tiling clone,   490/490
(100 %)
1 diff
(99.8 %id)
AV681758 hepatocellular carcinoma Gene C6, variant not shown         Suspected internal deletion, this clone was ignored    
AV682501 hepatocellular carcinoma Gene C6, variant not shown         Suspected internal deletion, this clone was ignored    
AV693277 hepatocellular carcinoma Gene C6, variant not shown         Suspected internal deletion, this clone was ignored    
AV697915 hepatocellular carcinoma Gene C6, variant not shown         Suspected internal deletion, this clone was ignored    
AV686730 hepatocellular carcinoma Gene C6, variant not shown         Suspected internal deletion, this clone was ignored    
AV691000 hepatocellular carcinoma Gene C6, variant not shown         Suspected internal deletion, this clone was ignored    
AV698335 hepatocellular carcinoma Gene C6, variant not shown         Suspected internal deletion, this clone was ignored    
AV653682 corresponding non cancerous liver tissue Gene C6, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV660504 corresponding non cancerous liver tissue Gene C6, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
N91544 lung Gene C6, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
W07155 lung Gene C6, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h-u, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI