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Gene TBC1D20TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
315 supporting clones for gene TBC1D20 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX421215 B cells (Ramos cell line) .a 1 to 1017 1 to 1017   tiling clone,   1017/1017
(100 %)
13 diff
(98.8 %id)
BC014983 Skin, melanotic melanoma, high MDR. .a 10 to 2003 1 to 1994   tiling clone, available from MGC, AAA   1994/1994
(100 %)
0 diff
(100 %id)
BX369520   .a 875 to 1514 1 to 640       640/899
(71 %)
17 diff
(98.2 %id)
CK003995 brain/CNS, Human Brain - Cerebellar Cortex .a 1030 to 1698 1 to 668       668/674
(99 %)
6 diff
(99.2 %id)
BX362469   .a 1064 to 1973 907 to 1       907/907
(100 %)
16 diff
(98.3 %id)
BX435774 B cells (Ramos cell line) .a 1407 to 2001 597 to 3       595/929
(64 %)
15 diff
(98.4 %id)
BI002017 head_normal .a 1425 to 1911 514 to 28       487/519
(93 %)
4 diff
(99.3 %id)
AA526378 normal prostate, Prostate .a 1501 to 2005 508 to 4       505/508
(99 %)
0 diff
(100 %id)
W31317 lung .a 1503 to 1971 1 to 479       479/479
(100 %)
12 diff
(97.5 %id)
AI146524 brain, glioblastoma (pooled) .a 1529 to 2003 498 to 24   AAA   475/475
(100 %)
2 diff
(99.6 %id)
AI140865 heart .a 1530 to 2004 475 to 1       475/475
(100 %)
1 diff
(99.8 %id)
R55444 breast .a 1547 to 1857 1 to 318   fully sequenced,   318/318
(100 %)
4 diff
(98.8 %id)
AI338865 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1547 to 2005 460 to 2       459/460
(99 %)
0 diff
(100 %id)
AA769848 liver and spleen .a 1554 to 2003 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
AI379475 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1557 to 2005 449 to 1       449/449
(100 %)
1 diff
(99.8 %id)
AA770290   .a 1561 to 2005 445 to 2       444/445
(99 %)
0 diff
(100 %id)
AI151038 brain, glioblastoma (pooled) .a 1562 to 1997 436 to 1       436/436
(100 %)
1 diff
(99.8 %id)
BE937302 stomach .a 1565 to 1881 1 to 316       316/316
(100 %)
4 diff
(98.8 %id)
N92434.
matches multiple genes
lung .a 1570 to 2005 440 to 5     also hits gene IER2 436/440
(99 %)
0 diff
(100 %id)
BQ363859 stomach .a 1573 to 1881 1 to 317       317/317
(100 %)
14 diff
(95.6 %id)
W73939.
matches multiple genes
heart .a 1577 to 2003 427 to 1     also hits gene PDIA3 427/427
(100 %)
1 diff
(99.8 %id)
AI990037 pooled germ cell tumors .a 1583 to 2003 421 to 1       421/421
(100 %)
1 diff
(99.8 %id)
AW237800 Kidney .a 1589 to 2004 416 to 1       416/416
(100 %)
1 diff
(99.8 %id)
BE669642 carcinoid, lung .a 1589 to 2005 418 to 2       417/418
(99 %)
0 diff
(100 %id)
AA569615 Prostate, prostatic intraepithelial neoplasia - highgrade .a 1601 to 1985 385 to 1       385/390
(98 %)
3 diff
(99.3 %id)
AI287660 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1610 to 2005 396 to 1       396/396
(100 %)
0 diff
(100 %id)
N90098 lung .a 1612 to 2003 392 to 1       392/393
(99 %)
6 diff
(98.5 %id)
AA733126 heart .a 1628 to 2005 378 to 1       378/378
(100 %)
2 diff
(99.5 %id)
W86962 liver and spleen .a 1636 to 1962 334 to 1       334/336
(99 %)
7 diff
(98.0 %id)
BF056438 pooled .a 1647 to 2005 362 to 4       359/362
(99 %)
0 diff
(100 %id)
AI354933 lung .a 1666 to 2003 349 to 12   AAA   338/338
(100 %)
1 diff
(99.8 %id)
BM695998 eye, human retina .a 1677 to 2006 1 to 330   AAA   330/330
(100 %)
0 diff
(100 %id)
AI139977 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1683 to 2005 330 to 8       323/330
(97 %)
0 diff
(100 %id)
AA592953 colon, colon tumor RER+ .a 1690 to 2003 314 to 1       314/314
(100 %)
1 diff
(99.7 %id)
AI783686 Prostate .a 1775 to 2003 247 to 19   AAA   229/229
(100 %)
5 diff
(97.9 %id)
AA342495 Spleen .a 1797 to 2003 207 to 1       207/214
(96 %)
1 diff
(99.6 %id)
AI699176 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1808 to 2004 197 to 1       197/197
(100 %)
0 diff
(100 %id)
R54991 breast .a 1827 to 2003 181 to 1   fully sequenced,   181/181
(100 %)
1 diff
(99.5 %id)
CR622506 T cells (Jurkat cell line) Cot10-normalized .b 1 to 1889 6 to 1894 exact tiling clone,   1894/1894
(100 %)
0 diff
(100 %id)
BX362470   .b 1 to 918 6 to 921       921/921
(100 %)
8 diff
(99.2 %id)
BG422573 Kidney, renal cell adenocarcinoma .b 115 to 915 1 to 797       797/957
(83 %)
10 diff
(99.0 %id)
BX350387   .b 525 to 1172 655 to 16       640/694
(92 %)
17 diff
(97.6 %id)
NM_144628.2   .c 1 to 4456 1 to 4456 exact RefSeq,   4456/4456
(100 %)
0 diff
(100 %id)
DB227445 trachea .c 11 to 610 2 to 601   tiling clone, capped   600/600
(100 %)
1 diff
(99.9 %id)
DA334001 hippocampus .c 12 to 588 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
BE276157 melanotic melanoma, skin .c 13 to 541 1 to 532       532/532
(100 %)
3 diff
(99.5 %id)
BE276163 melanotic melanoma, skin .c 13 to 553 1 to 541       541/541
(100 %)
0 diff
(100 %id)
BE388289 endometrium, adenocarcinoma cell line, uterus .c 13 to 566 1 to 561       561/561
(100 %)
10 diff
(98.3 %id)
BE391114 endometrium, adenocarcinoma cell line, uterus .c 13 to 654 1 to 645       645/671
(96 %)
9 diff
(98.7 %id)
BE409340 choriocarcinoma, placenta .c 13 to 654 1 to 640       640/724
(88 %)
8 diff
(98.9 %id)
DB156174 thymus .c 22 to 574 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
BX956174   .c 25 to 492 1 to 468       468/468
(100 %)
1 diff
(99.8 %id)
CF993832 Human Placenta, placenta .c 25 to 766 28 to 776       749/829
(90 %)
20 diff
(97.6 %id)
BI828007 brain, medulla .c 27 to 721 1 to 695       695/695
(100 %)
1 diff
(99.9 %id)
TI_57171655   .c 27 to 721 34 to 728       695/728
(95 %)
8 diff
(99.0 %id)
AK291648 placenta .c 28 to 1385 1 to 1358 exact tiling clone,   1358/1358
(100 %)
0 diff
(100 %id)
DB481502 hippocampus .c 28 to 507 1 to 480       480/481
(99 %)
1 diff
(99.8 %id)
CF993742 Human Placenta, placenta .c 29 to 694 27 to 695       669/856
(78 %)
26 diff
(97.0 %id)
DA853488 placenta .c 29 to 603 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BX956182   .c 31 to 475 1 to 445       445/445
(100 %)
1 diff
(99.8 %id)
BE391493 endometrium, adenocarcinoma cell line, uterus .c 31 to 514 31 to 519       489/519
(94 %)
13 diff
(97.5 %id)
TI_45379885   .c 32 to 793 63 to 832   fully sequenced,   770/832
(92 %)
23 diff
(97.3 %id)
CN373325 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 33 to 586 1 to 554       554/554
(100 %)
2 diff
(99.7 %id)
CN373326 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 33 to 735 9 to 711       703/711
(98 %)
6 diff
(99.2 %id)
BG421219 Kidney, renal cell adenocarcinoma .c 36 to 660 1 to 626       626/912
(68 %)
4 diff
(99.6 %id)
BI488939 brain .c 36 to 793 1 to 765   fully sequenced,   765/765
(100 %)
18 diff
(97.7 %id)
BG421981 Kidney, renal cell adenocarcinoma .c 38 to 530 1 to 496       496/499
(99 %)
9 diff
(98.2 %id)
BU153879 eye, retinoblastoma .c 38 to 563 12 to 548       537/940
(57 %)
30 diff
(96.9 %id)
BU156450 eye, retinoblastoma .c 38 to 879 1 to 850       850/852
(99 %)
11 diff
(98.8 %id)
CR980752 T-Lymphocytes .c 39 to 683 1 to 645       645/645
(100 %)
7 diff
(99.0 %id)
BG764533 melanotic melanoma, high MDR (cell line), skin .c 40 to 783 1 to 756       756/756
(100 %)
23 diff
(97.0 %id)
CD673338 eye, Iris .c 42 to 661 1 to 620       620/620
(100 %)
3 diff
(99.6 %id)
BQ432322 leiomyosarcoma, uterus .c 42 to 903 1 to 864       864/873
(98 %)
4 diff
(99.6 %id)
DR001898 fetal brain .c 136 to 860 1 to 736       747/736
(101 %)
57 diff
(92.3 %id)
AB449906 brain .c 139 to 1350 1 to 1212 exact     1212/1212
(100 %)
0 diff
(100 %id)
DR000793 fetal brain .c 149 to 762 1 to 614       614/614
(100 %)
5 diff
(99.2 %id)
BQ073266 epidermoid carcinoma, cell line, lung .c 155 to 1003 1 to 857       857/1045
(82 %)
30 diff
(97.2 %id)
BQ956553 epidermoid carcinoma, cell line, lung .c 155 to 1103 1 to 956       956/979
(97 %)
18 diff
(98.2 %id)
AW806616 stomach .c 213 to 764 1 to 551       551/557
(98 %)
19 diff
(96.6 %id)
DA098451 cerebellum .c 261 to 806 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
TI_1948154083   .c 272 to 1349 1206 to 130       1077/1402
(76 %)
40 diff
(97.2 %id)
DA408040 thalamus .c 287 to 826 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
AL732153 breast .c 367 to 802 436 to 1       436/437
(99 %)
1 diff
(99.8 %id)
TI_1948154169   .c 414 to 1349 1064 to 128       937/1421
(65 %)
24 diff
(98.4 %id)
BF904679 marrow .c 416 to 810 1 to 396       396/396
(100 %)
9 diff
(97.8 %id)
TI_1948154264   .c 472 to 1349 1008 to 130       879/1461
(60 %)
18 diff
(98.8 %id)
DA230581 brain .c 479 to 1097 2 to 620   capped   619/619
(100 %)
0 diff
(100 %id)
DA249363 brain .c 479 to 972 2 to 495   capped   494/494
(100 %)
0 diff
(100 %id)
DA719861   .c 479 to 989 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
DA331031 hippocampus .c 492 to 1035 2 to 545   capped   544/548
(99 %)
2 diff
(99.7 %id)
BQ652412 hepatocellular carcinoma, cell line, Liver .c 507 to 1385 19 to 906       888/906
(98 %)
26 diff
(97.2 %id)
BQ643538 hepatocellular carcinoma, cell line, Liver .c 509 to 1428 1 to 921       921/985
(93 %)
27 diff
(97.3 %id)
BQ650018 hepatocellular carcinoma, cell line, Liver .c 509 to 1391 1 to 889       889/891
(99 %)
17 diff
(98.1 %id)
BQ649210 hepatocellular carcinoma, cell line, Liver .c 509 to 1396 1 to 885       885/894
(98 %)
11 diff
(98.8 %id)
BG506701 lung .c 520 to 1227 1 to 699       701/699
(100 %)
14 diff
(98.0 %id)
TI_1948154344   .c 530 to 1349 949 to 131       819/1354
(60 %)
24 diff
(98.3 %id)
CR747219 melanotic melanoma, skin .c 533 to 1030 20 to 517       498/517
(96 %)
6 diff
(98.9 %id)
BQ223939 melanotic melanoma, skin .c 533 to 1297 8 to 783       776/855
(90 %)
22 diff
(97.5 %id)
CK820013 Islets of Langerhans, Pancreas .c 595 to 1189 1 to 595       595/595
(100 %)
1 diff
(99.9 %id)
BM354028 Islets of Langerhans, Pancreas .c 611 to 1067 1 to 457       457/457
(100 %)
0 diff
(100 %id)
AW846656 colon .c 614 to 876 1 to 263       263/263
(100 %)
8 diff
(97.0 %id)
BM557995 astrocytoma grade IV, cell line, brain .c 665 to 1310 1 to 651       651/1024
(63 %)
26 diff
(97.5 %id)
DA390910 thalamus .c 677 to 1265 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
BG392881 embryonal carcinoma, cell line, testis .c 679 to 1321 1 to 643       643/643
(100 %)
0 diff
(100 %id)
EL595134 epidermis, skin .c 683 to 1198 17 to 532       516/566
(91 %)
7 diff
(98.8 %id)
EL595147 epidermis, skin .c 683 to 1477 17 to 808       792/809
(97 %)
20 diff
(97.6 %id)
BI088448 cervix .c 698 to 1453 1 to 757       757/792
(95 %)
15 diff
(98.2 %id)
DA288959 hippocampus .c 704 to 1253 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA106440 cerebellum .c 706 to 1259 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA287019 corpus callosum .c 711 to 1280 2 to 571   capped   570/573
(99 %)
2 diff
(99.7 %id)
BU838419 dorsal root ganglia .c 733 to 1688 1 to 969       969/969
(100 %)
26 diff
(97.4 %id)
BC047616 Brain, anaplastic oligodendroglioma with1p/19q loss .c 753 to 3651 1 to 2899   tiling clone, available from MGC, AAA   2899/2899
(100 %)
2 diff
(100.0 %id)
BG912664 anaplastic oligodendroglioma with 1p/19qloss, brain .c 754 to 1409 1 to 657   available from MGC,   657/659
(99 %)
6 diff
(99.1 %id)
BI489399 brain .c 763 to 1377 651 to 7   fully sequenced,   645/651
(99 %)
21 diff
(96.8 %id)
TI_45379886   .c 763 to 1377 651 to 7   fully sequenced,   645/651
(99 %)
21 diff
(96.8 %id)
AL844333 stomach .c 806 to 1226 10 to 430       421/431
(97 %)
9 diff
(98.0 %id)
AL844334 stomach .c 842 to 1188 357 to 1       357/451
(79 %)
8 diff
(98.3 %id)
DA886524   .c 855 to 1402 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
BF843748 head_neck .c 876 to 1336 13 to 468       458/537
(85 %)
27 diff
(95.0 %id)
DB165733 thymus .c 879 to 1447 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
AI809134 pooled .c 880 to 1451 575 to 4       572/575
(99 %)
1 diff
(99.9 %id)
CF147373 CNCAP(3)T-225 cell line, Prostate .c 898 to 1441 8 to 552       545/552
(98 %)
1 diff
(99.9 %id)
TI_154179999   .c 898 to 1450 79 to 632       554/558
(99 %)
2 diff
(99.7 %id)
BM928614 hepatocellular carcinoma, cell line, Liver .c 915 to 1776 1 to 868   tiling clone,   868/1047
(82 %)
17 diff
(98.4 %id)
W03115 liver and spleen .c 924 to 1155 7 to 235       229/235
(97 %)
7 diff
(97.1 %id)
R10955 liver and spleen .c 931 to 1289 1 to 364       364/364
(100 %)
8 diff
(97.9 %id)
T87997 liver and spleen .c 932 to 1352 1 to 431       431/436
(98 %)
16 diff
(96.4 %id)
W02620 liver and spleen .c 932 to 1479 1 to 555       555/555
(100 %)
17 diff
(97.0 %id)
DA402917 thalamus .c 968 to 1562 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
AI027632   .c 974 to 1450 488 to 12   AAA   477/477
(100 %)
0 diff
(100 %id)
BQ028267 mixed .c 983 to 1450 486 to 19   AAA   468/468
(100 %)
1 diff
(99.8 %id)
CA310329 Alveolar Macrophage, lung .c 983 to 1450 486 to 19   AAA   468/468
(100 %)
0 diff
(100 %id)
AI363139 anaplastic oligodendroglioma, brain .c 990 to 1452 463 to 1       463/463
(100 %)
0 diff
(100 %id)
AI560940 anaplastic oligodendroglioma, brain .c 1011 to 1450 440 to 1       440/440
(100 %)
0 diff
(100 %id)
AI016234   .c 1022 to 1451 434 to 4       431/434
(99 %)
1 diff
(99.8 %id)
N94712 multiple sclerosis lesions .c 1027 to 1460 1 to 431   fully sequenced,   431/431
(100 %)
7 diff
(98.4 %id)
CU446973 epidermis .c 1036 to 1754 733 to 15     Submitted on the opposite strand 719/733
(98 %)
0 diff
(100 %id)
AI797295 pooled .c 1049 to 1453 409 to 4       406/409
(99 %)
0 diff
(100 %id)
BF382054 brain, primitive neuroectoderm .c 1060 to 1450 1 to 391   AAA   391/391
(100 %)
5 diff
(98.8 %id)
BU528646 epidermoid carcinoma, cell line, lung .c 1084 to 1966 1 to 885       885/886
(99 %)
7 diff
(99.3 %id)
BF928321 nervous_tumor .c 1093 to 1344 252 to 1     Submitted on the opposite strand 252/258
(97 %)
1 diff
(99.7 %id)
N63499 multiple sclerosis lesions .c 1180 to 1460 282 to 1   fully sequenced,   282/282
(100 %)
0 diff
(100 %id)
AI206491 Kidney .c 1193 to 1453 261 to 1       261/261
(100 %)
0 diff
(100 %id)
BI083803 epidermoid carcinoma, cell line, salivary gland .c 1251 to 1850 1 to 603       603/604
(99 %)
17 diff
(97.2 %id)
T06423   .c 1393 to 1702 1 to 310       310/310
(100 %)
1 diff
(99.7 %id)
DB131155 thymus .c 1400 to 1942 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BE867496 adenocarcinoma, colon .c 1423 to 2115 1 to 690       690/690
(100 %)
5 diff
(99.3 %id)
BE327405 carcinoid, lung .c 1467 to 1910 1 to 444     Submitted on the opposite strand 444/444
(100 %)
2 diff
(99.6 %id)
BE896556 melanotic melanoma, skin .c 1468 to 2163 1 to 691       691/695
(99 %)
12 diff
(98.3 %id)
BG910483 anaplastic oligodendroglioma with 1p/19qloss, brain .c 1488 to 2296 7 to 811       805/851
(94 %)
37 diff
(95.7 %id)
BM918467 pooled pancreas and spleen .c 1558 to 2610 1 to 1058       1058/1060
(99 %)
22 diff
(98.0 %id)
CN296064 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1581 to 2113 1 to 533       533/533
(100 %)
3 diff
(99.5 %id)
BE541350 cervix .c 1648 to 2357 1 to 718       718/869
(82 %)
23 diff
(97.4 %id)
N74407 liver and spleen .c 1688 to 2160 474 to 1       474/474
(100 %)
2 diff
(99.6 %id)
BM480403 duodenal adenocarcinoma, cell line, small intestine .c 1693 to 2696 1 to 998       998/998
(100 %)
18 diff
(98.2 %id)
N74353 liver and spleen .c 1696 to 2157 462 to 1       462/462
(100 %)
0 diff
(100 %id)
T87904 liver and spleen .c 1712 to 2153 442 to 1       442/444
(99 %)
0 diff
(100 %id)
CD683675 normal nasopharynx .c 1754 to 2205 22 to 474       453/474
(95 %)
6 diff
(98.8 %id)
R10903 liver and spleen .c 1783 to 2145 363 to 1       363/363
(100 %)
0 diff
(100 %id)
BG957993 colon .c 1809 to 2010 210 to 7       204/211
(96 %)
5 diff
(97.7 %id)
CN373321 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 1940 to 2640 1 to 700       700/700
(100 %)
1 diff
(99.9 %id)
GD137111   .c 1952 to 2157 1 to 206   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 206/206
(100 %)
8 diff
(96.2 %id)
DA342792 substantia nigra .c 2026 to 2608 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
BQ478445 insulinoma, Pancreas .c 2048 to 2523 483 to 8     Submitted on the opposite strand 476/483
(98 %)
0 diff
(100 %id)
BG953453 colon .c 2053 to 2245 154 to 346       193/346
(55 %)
6 diff
(98.3 %id)
BE931815 head_neck .c 2062 to 2414 1 to 355       355/373
(95 %)
6 diff
(98.4 %id)
AA903337 leiomyosarcoma, soft tissue .c 2062 to 2344 9 to 291   AAA Submitted on the opposite strand 283/291
(97 %)
6 diff
(98.0 %id)
BX488519   .c 2154 to 2719 1 to 561       561/561
(100 %)
7 diff
(98.8 %id)
BF672265 muscle (skeletal) .c 2156 to 2653 1 to 509       509/620
(82 %)
20 diff
(96.8 %id)
DA252964 caudate nucleus .c 2169 to 2761 2 to 595   capped   594/594
(100 %)
2 diff
(99.7 %id)
CN373324 embryonic stem cells, DMSO-treated H9 cellline .c 2183 to 2719 1 to 537       537/537
(100 %)
1 diff
(99.9 %id)
AK092063   .c 2205 to 4454 1 to 2250   available from FLJ,   2250/2250
(100 %)
4 diff
(99.9 %id)
BQ081883 stomach .c 2205 to 2723 1 to 519       519/519
(100 %)
1 diff
(99.9 %id)
DA654085   .c 2206 to 2795 2 to 592   capped   591/591
(100 %)
3 diff
(99.5 %id)
DA477349   .c 2207 to 2761 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA958576 Spleen .c 2213 to 2768 2 to 557   capped   556/556
(100 %)
4 diff
(99.3 %id)
DA292440 hippocampus .c 2252 to 2801 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA293146 hippocampus .c 2311 to 2876 2 to 567   tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
BF380711 uterus_tumor .c 2364 to 2506 1 to 143       143/153
(93 %)
2 diff
(98.7 %id)
BM720864 eye, fetal eye .c 2372 to 3030 1 to 658   fully sequenced,   658/658
(100 %)
4 diff
(99.4 %id)
BM799597 eye, retinoblastoma .c 2445 to 3437 1 to 996       996/1115
(89 %)
21 diff
(98.2 %id)
BU859089 ovary, teratocarcinoma, cell line .c 2473 to 3288 1 to 825       825/884
(93 %)
16 diff
(98.2 %id)
BU541166 carcinoma, cell line, Prostate .c 2558 to 3350 1 to 799       799/889
(89 %)
9 diff
(99.0 %id)
AW368196 head_neck .c 2602 to 2698 99 to 1       99/99
(100 %)
2 diff
(98.0 %id)
DA487021 brain .c 2617 to 3209 2 to 594   capped   593/595
(99 %)
1 diff
(99.9 %id)
H64853 liver and spleen .c 2619 to 2801 1 to 184       184/195
(94 %)
1 diff
(99.5 %id)
BQ943534 carcinoma, cell line, Prostate .c 2638 to 3409 6 to 799       794/949
(83 %)
41 diff
(95.7 %id)
BP424276 small intestine .c 2680 to 3233 1 to 554     Submitted on the opposite strand 554/554
(100 %)
0 diff
(100 %id)
DA600224   .c 2801 to 3375 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
BM997802 lung, Lung Focal Fibrosis .c 2805 to 3401 1 to 597   AAA Submitted on the opposite strand 597/597
(100 %)
7 diff
(98.9 %id)
AA187760   .c 2819 to 3290 1 to 473   fully sequenced,   473/473
(100 %)
3 diff
(99.4 %id)
CR611379 T cells (Jurkat cell line) Cot10-normalized .c 2865 to 4452 1 to 1588   tiling clone,   1588/1588
(100 %)
0 diff
(100 %id)
BX362335   .c 2865 to 3627 1 to 762   fully sequenced,   762/762
(100 %)
15 diff
(98.1 %id)
BI084471 epidermoid carcinoma, cell line, salivary gland .c 2896 to 3599 718 to 2       717/891
(80 %)
0 diff
(100 %id)
AA055422 heart .c 2971 to 3387 1 to 418       418/418
(100 %)
4 diff
(99.1 %id)
BG325187 Kidney, renal cell adenocarcinoma .c 2979 to 3669 1 to 690   available from MGC,   690/691
(99 %)
4 diff
(99.5 %id)
BC014648 Kidney, renal cell adenocarcinoma .c 2980 to 4454 1 to 1475   available from MGC, AAA   1475/1475
(100 %)
1 diff
(100.0 %id)
F07418 brain, total brain .c 2994 to 3251 1 to 258       258/258
(100 %)
0 diff
(100 %id)
F11459 brain, total brain .c 2995 to 3331 1 to 337       337/337
(100 %)
1 diff
(99.8 %id)
H07022 whole brain .c 2995 to 3467 1 to 479       479/490
(97 %)
17 diff
(96.6 %id)
BM676962 eye, fetal eye .c 3000 to 3651 670 to 19   fully sequenced, AAA   652/652
(100 %)
0 diff
(100 %id)
CD742863 Alveolar Macrophage, lung .c 3049 to 3655 628 to 19   AAA   610/610
(100 %)
3 diff
(99.6 %id)
BU616751 Cell Line, Chondrosarcoma .c 3078 to 3651 592 to 19   AAA   574/753
(76 %)
5 diff
(99.4 %id)
CA429628 Cell Line, Chondrosarcoma .c 3078 to 3651 592 to 19   AAA   574/723
(79 %)
5 diff
(99.4 %id)
BQ008587 Chondrosarcoma, Left Pubic Bone .c 3081 to 3658 595 to 19   AAA   577/655
(88 %)
2 diff
(99.7 %id)
BM699476 eye, fetal eyes .c 3094 to 3648 1 to 555       555/555
(100 %)
0 diff
(100 %id)
EL946891 eyeball .c 3121 to 3486 1 to 368       368/368
(100 %)
8 diff
(97.9 %id)
BE349614 malignant melanoma, metastatic to lymphnode, skin .c 3129 to 3651 523 to 1       523/523
(100 %)
0 diff
(100 %id)
CN291884 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 3144 to 3568 1 to 425       425/425
(100 %)
0 diff
(100 %id)
EC562380 Prostate .c 3148 to 3247 1 to 97       97/97
(100 %)
3 diff
(97.0 %id)
N98475 multiple sclerosis lesions .c 3148 to 3772 1 to 628       628/628
(100 %)
14 diff
(97.8 %id)
BF956260 nervous_normal .c 3172 to 3499 329 to 1       329/333
(98 %)
6 diff
(98.2 %id)
EC452799 Prostate .c 3182 to 3278 1 to 97       97/97
(100 %)
0 diff
(100 %id)
EC511879 Prostate .c 3182 to 3278 1 to 98       98/98
(100 %)
1 diff
(99.0 %id)
EC570378 Prostate .c 3182 to 3275 1 to 95       95/99
(95 %)
4 diff
(96.0 %id)
AA861166   .c 3182 to 3648 476 to 10       467/476
(98 %)
0 diff
(100 %id)
DB550322 hippocampus .c 3183 to 3650 1 to 468     Submitted on the opposite strand 468/468
(100 %)
0 diff
(100 %id)
BE826040 lung_normal .c 3184 to 3634 1 to 446       446/449
(99 %)
10 diff
(97.8 %id)
AW204209   .c 3199 to 3651 470 to 18   AAA   453/461
(98 %)
0 diff
(100 %id)
TI_153987895   .c 3199 to 3651 544 to 92   AAA   453/630
(71 %)
0 diff
(100 %id)
AI079939 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3201 to 3653 457 to 5       453/457
(99 %)
0 diff
(100 %id)
AI040257 senescent fibroblast .c 3209 to 3653 450 to 6       445/450
(98 %)
0 diff
(100 %id)
BI711644 insulinoma, Pancreas .c 3209 to 3747 8 to 546       539/546
(98 %)
6 diff
(99.0 %id)
CK820494 insulinoma, Pancreas .c 3209 to 3743 8 to 542       535/542
(98 %)
6 diff
(98.9 %id)
BI710896 insulinoma, Pancreas .c 3209 to 3720 8 to 520       513/520
(98 %)
6 diff
(98.9 %id)
BU783271 insulinoma, Pancreas .c 3209 to 3784 8 to 583       576/583
(98 %)
6 diff
(99.0 %id)
BU783389 insulinoma, Pancreas .c 3209 to 3788 8 to 587       580/587
(98 %)
6 diff
(99.0 %id)
DA318261 hippocampus .c 3210 to 3795 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
AI299608 carcinoid, lung .c 3211 to 3651 441 to 1       441/441
(100 %)
0 diff
(100 %id)
AV652160 corresponding non cancerous liver tissue .c 3225 to 3902 1 to 678     Submitted on the opposite strand 678/678
(100 %)
2 diff
(99.8 %id)
AA397939.
matches multiple genes
  .c 3225 to 3620 1 to 395     also hits gene keewy 395/395
(100 %)
2 diff
(99.5 %id)
AW074047 2 pooled high-grade transitional celltumors, genitourinary tract .c 3232 to 3651 420 to 1       420/420
(100 %)
0 diff
(100 %id)
AI224542 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3234 to 3653 424 to 5       420/424
(99 %)
0 diff
(100 %id)
BF448345 carcinoid, lung .c 3235 to 3653 421 to 3       419/421
(99 %)
0 diff
(100 %id)
BG533931 lung .c 3235 to 3847 271 to 895       625/984
(63 %)
6 diff
(99.4 %id)
DB534651 hippocampus .c 3240 to 3650 1 to 412     Submitted on the opposite strand 412/412
(100 %)
2 diff
(99.6 %id)
AI198639   .c 3242 to 3651 426 to 17   AAA   410/410
(100 %)
0 diff
(100 %id)
AI438944 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 3248 to 3651 430 to 27   AAA   404/404
(100 %)
0 diff
(100 %id)
AA569653   .c 3253 to 3655 416 to 14   AAA   403/403
(100 %)
1 diff
(99.8 %id)
AA435762.
matches multiple genes
  .c 3259 to 3653 396 to 2     also hits gene CREBL2 395/396
(99 %)
0 diff
(100 %id)
AA182783   .c 3260 to 3652 393 to 1   fully sequenced,   393/393
(100 %)
0 diff
(100 %id)
AI632537 pooled germ cell tumors .c 3263 to 3652 390 to 1       390/390
(100 %)
0 diff
(100 %id)
AA812857   .c 3265 to 3653 393 to 5       389/393
(98 %)
0 diff
(100 %id)
AI075268 B-cell, chronic lymphotic leukemia .c 3265 to 3653 392 to 4       389/392
(99 %)
0 diff
(100 %id)
DB540360 hippocampus .c 3276 to 3651 1 to 376   AAA Submitted on the opposite strand 376/376
(100 %)
5 diff
(98.7 %id)
BM148538 leukopheresis .c 3279 to 3653 388 to 14       375/388
(96 %)
0 diff
(100 %id)
AA857033 adenocarcinoma, colon .c 3326 to 3654 329 to 1       329/329
(100 %)
0 diff
(100 %id)
AI242835 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3329 to 3655 327 to 1       327/327
(100 %)
0 diff
(100 %id)
N93102 lung .c 3334 to 3653 325 to 5       321/326
(98 %)
0 diff
(100 %id)
BG681907 skin, squamous cell carcinoma .c 3336 to 4173 1 to 839       839/839
(100 %)
5 diff
(99.5 %id)
AI207048 lung .c 3353 to 3653 306 to 5       302/306
(98 %)
0 diff
(100 %id)
AI914775 ovary, tumor, 5 pooled (see description) .c 3361 to 3652 291 to 1       291/291
(100 %)
4 diff
(98.7 %id)
AI701766 carcinoid, lung .c 3378 to 3651 274 to 1       274/274
(100 %)
0 diff
(100 %id)
AI971268 Prostate .c 3391 to 3650 271 to 11   AAA   261/261
(100 %)
3 diff
(98.9 %id)
AW003580 pooled germ cell tumors .c 3411 to 3646 251 to 16   AAA   236/236
(100 %)
0 diff
(100 %id)
C02513   .c 3440 to 3651 1 to 212       212/212
(100 %)
1 diff
(99.6 %id)
BU594327 mixed (pool of 40 RNAs) .c 3455 to 4255 1 to 803       803/840
(95 %)
20 diff
(97.7 %id)
TI_149308298   .c 3458 to 4129 46 to 717     Submitted on the opposite strand 672/1049
(64 %)
6 diff
(99.5 %id)
TI_159715131   .c 3458 to 4129 56 to 727     Submitted on the opposite strand 672/1103
(60 %)
6 diff
(99.5 %id)
CB851283 lung, Primary Lung Epithelial Cells .c 3458 to 4129 1 to 672     Submitted on the opposite strand 672/680
(98 %)
6 diff
(99.2 %id)
CB851776 Human Lung Epithelial cells, lung .c 3458 to 4129 1 to 672     Submitted on the opposite strand 672/681
(98 %)
6 diff
(99.2 %id)
DB539648 hippocampus .c 3459 to 3650 1 to 193     Submitted on the opposite strand 193/194
(99 %)
5 diff
(97.5 %id)
BM697666 eye, fetal eyes .c 3466 to 4132 1 to 667       667/667
(100 %)
6 diff
(99.2 %id)
AV747470 Pituitary .c 3475 to 3921 1 to 440       440/542
(81 %)
14 diff
(97.5 %id)
BF665329 brain, primitive neuroectoderm .c 3512 to 4167 1 to 641       641/717
(89 %)
21 diff
(97.1 %id)
AF116909 heart .c 3561 to 4454 1 to 894       894/894
(100 %)
1 diff
(99.9 %id)
W77983.
matches multiple genes
heart .c 3577 to 4033 1 to 457     also hits gene LHFPL2 457/457
(100 %)
0 diff
(100 %id)
BX352339   .c 3597 to 4452 854 to 1   fully sequenced,   854/854
(100 %)
14 diff
(98.4 %id)
N45719 multiple sclerosis lesions .c 3618 to 3855 1 to 239       239/239
(100 %)
4 diff
(98.4 %id)
BE173353 head_neck .c 3625 to 3902 282 to 4     Submitted on the opposite strand 279/282
(98 %)
0 diff
(100 %id)
AA625260 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3627 to 4094 1 to 468       468/468
(100 %)
0 diff
(100 %id)
CU448257 epidermis .c 3664 to 4090 4 to 429       426/447
(95 %)
6 diff
(98.7 %id)
BQ707511 Spleen .c 3701 to 4454 1 to 756   AAA   756/756
(100 %)
11 diff
(98.6 %id)
AA035293 uterus .c 3740 to 3946 1 to 208       208/210
(99 %)
2 diff
(99.1 %id)
TI_149284944   .c 3751 to 4459 769 to 63   AAA   707/708
(99 %)
10 diff
(98.6 %id)
BE879044 large cell carcinoma, undifferentiated, lung .c 3774 to 4336 1 to 561       561/561
(100 %)
4 diff
(99.3 %id)
BI711241 insulinoma, Pancreas .c 3828 to 4454 642 to 16   AAA   627/627
(100 %)
2 diff
(99.7 %id)
BU783142 insulinoma, Pancreas .c 3833 to 4454 637 to 16   AAA   622/622
(100 %)
2 diff
(99.7 %id)
BM984598 lung .c 3841 to 4459 638 to 19   tiling clone, AAA   620/620
(100 %)
2 diff
(99.7 %id)
BI711348 insulinoma, Pancreas .c 3844 to 4454 630 to 16   AAA   615/616
(99 %)
9 diff
(98.6 %id)
BF591523 brain, glioblastoma (pooled) .c 3915 to 4448 533 to 1       533/533
(100 %)
3 diff
(99.5 %id)
H05471 whole brain .c 3917 to 4454 554 to 11   AAA   544/544
(100 %)
18 diff
(96.7 %id)
BE673756 carcinoid, lung .c 3920 to 4456 538 to 2       537/538
(99 %)
0 diff
(100 %id)
W87327 liver and spleen .c 3927 to 4395 1 to 472       472/473
(99 %)
4 diff
(99.2 %id)
AA011700 liver and spleen .c 3927 to 4317 1 to 395   fully sequenced,   395/395
(100 %)
4 diff
(99.0 %id)
DB321768   .c 3938 to 4454 519 to 1       519/519
(100 %)
3 diff
(99.5 %id)
AA054960 heart .c 3994 to 4456 475 to 4       472/476
(99 %)
0 diff
(100 %id)
BU783028 insulinoma, Pancreas .c 4003 to 4454 467 to 16   AAA   452/452
(100 %)
2 diff
(99.6 %id)
N66086 multiple sclerosis lesions .c 4031 to 4452 427 to 1       427/427
(100 %)
8 diff
(98.2 %id)
N48997 multiple sclerosis lesions .c 4038 to 4454 418 to 1       418/418
(100 %)
2 diff
(99.6 %id)
F09120 brain, total brain .c 4111 to 4454 344 to 1       344/344
(100 %)
1 diff
(99.8 %id)
Z41706 brain, total brain .c 4151 to 4454 304 to 1       304/304
(100 %)
1 diff
(99.7 %id)
BU735841 eye, fetal eyes .c 4213 to 4455 263 to 21       243/263
(92 %)
0 diff
(100 %id)
AA011592 liver and spleen .c 4287 to 4448 163 to 1   fully sequenced,   163/163
(100 %)
1 diff
(99.4 %id)
AK095110 hippocampus .d 1 to 3819 2 to 3820 S128F tiling clone, available from FLJ,   3820/3820
(100 %)
6 diff
(99.9 %id)
DA311494 hippocampus .d 1 to 528 2 to 529   capped   528/528
(100 %)
2 diff
(99.7 %id)
CB960021 Human Placenta, placenta .d 30 to 776 27 to 782       756/822
(91 %)
18 diff
(97.9 %id)
CB989135 Human Placenta, placenta .d 30 to 753 27 to 753   tiling clone,   727/774
(93 %)
10 diff
(98.8 %id)
CF994903 Human Placenta, placenta .d 30 to 772 27 to 776       750/854
(87 %)
19 diff
(97.8 %id)
BF957256 nervous_normal .d 650 to 907 259 to 4       256/270
(94 %)
0 diff
(100 %id)
DB308481 hippocampus .d 3268 to 3819 552 to 1       552/552
(100 %)
1 diff
(99.9 %id)
DB156456 thymus .e 140 to 695 27 to 582 exact tiling clone, capped Suspected internal deletion 581/581
(100 %)
0 diff
(100 %id)
CN373322 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 1 to 371 1 to 371   tiling clone,   371/371
(100 %)
1 diff
(99.8 %id)
BG190810   .f 316 to 881 578 to 14   tiling clone, Submitted on the opposite strand 565/579
(97 %)
0 diff
(100 %id)
AI394591 B-cell, chronic lymphotic leukemia .f 469 to 880 412 to 1       412/412
(100 %)
0 diff
(100 %id)
AW439272 serous papillary carcinoma, high grade, 2pooled tumors, uterus .f 505 to 894 390 to 1       390/390
(100 %)
1 diff
(99.8 %id)
CD679402 eye, Trabecular meshwork .f 548 to 881 1 to 334       334/335
(99 %)
3 diff
(99.2 %id)
BM973972 lung .f 746 to 894 163 to 15   AAA   149/153
(97 %)
0 diff
(100 %id)
H77361 liver and spleen .f 830 to 1294 1 to 471   tiling clone, Submitted on the opposite strand 471/471
(100 %)
14 diff
(97.1 %id)
H77371 liver and spleen .f 877 to 1248 1 to 377   tiling clone, Submitted on the opposite strand 377/379
(99 %)
11 diff
(97.1 %id)
BF772827 epid_tumor .f 982 to 1113 132 to 1     Submitted on the opposite strand 132/132
(100 %)
0 diff
(100 %id)
BX647370 human fetal kidney .g 1 to 5193 1 to 5195 exact tiling clone, available from DKFZ, AAA   5195/5195
(100 %)
11 diff
(99.8 %id)
AK055573 lung .g 251 to 2189 1 to 1939 exact available from FLJ,   1939/1939
(100 %)
2 diff
(99.9 %id)
DA581227 lung .g 252 to 601 2 to 351   capped   350/350
(100 %)
0 diff
(100 %id)
AL603302 human skeletal muscle .g 451 to 1167 1 to 720       720/720
(100 %)
5 diff
(99.4 %id)
DA239529 brain .g 656 to 1256 2 to 602   tiling clone, capped   601/601
(100 %)
1 diff
(99.9 %id)
CN296066 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .g 1301 to 1505 1 to 205       205/205
(100 %)
1 diff
(99.6 %id)
DA094090 cerebellum .g 1354 to 1916 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB319190 lung .g 1646 to 2189 544 to 1       544/544
(100 %)
1 diff
(99.9 %id)
CN373323 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .h 1 to 460 1 to 460 exact tiling clone,   460/460
(100 %)
0 diff
(100 %id)
DA338764 hippocampus .i 1 to 585 2 to 587 E21G K22E A23G D24R F25L ... tiling clone, capped   586/586
(100 %)
2 diff
(99.7 %id)
DA374734 thalamus .j 1 to 566 2 to 567 exact tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
DA756632   .k 1 to 546 2 to 547   tiling clone, capped   546/555
(98 %)
0 diff
(100 %id)
AK055488 brain .l 1 to 3218 2 to 3218 exact tiling clone, available from FLJ,   3218/3218
(100 %)
5 diff
(99.9 %id)
DA517777 brain .l 1 to 520 2 to 522   capped   521/521
(100 %)
2 diff
(99.7 %id)
DB316978 brain .l 2697 to 3218 522 to 1       522/531
(98 %)
0 diff
(100 %id)
AV707885 adrenal gland .m-u 1 to 428 1 to 428   tiling clone,   428/428
(100 %)
0 diff
(100 %id)
DB131378 thymus .m-u 307 to 858 2 to 553 K18I capped   552/552
(100 %)
2 diff
(99.7 %id)
EL594969 epidermis, skin .m-u 359 to 909 561 to 12 exact   Submitted on the opposite strand 550/580
(94 %)
0 diff
(100 %id)
CN296065 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .m-u 400 to 899 1 to 500   tiling clone,   500/500
(100 %)
2 diff
(99.6 %id)
BX479423   .m-u 400 to 980 1 to 581   tiling clone,   581/581
(100 %)
2 diff
(99.7 %id)
AA375952 lung .m-u 437 to 867 1 to 432       432/432
(100 %)
1 diff
(99.8 %id)
AW963834   .m-u 438 to 922 1 to 488       488/557
(87 %)
21 diff
(96.3 %id)
DA235848 brain .n 1 to 574 2 to 576 exact tiling clone, capped   575/575
(100 %)
2 diff
(99.7 %id)
CA446057 Chondrosarcoma, Left Pelvis Gene TBC1D20, variant not shown         This clone was ignored    
AK127062 brain Gene TBC1D20, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
BX096663 liver and spleen Gene TBC1D20, variant not shown         Submitted on the opposite strand    
DB305816 brain Gene TBC1D20, variant not shown         Suspected internal deletion, this clone was ignored    
DA238706 brain Gene TBC1D20, variant not shown       capped Suspected internal deletion, this clone was ignored    
H77360 liver and spleen Gene TBC1D20, variant not shown         Submitted on the opposite strand    
H77370 liver and spleen Gene TBC1D20, variant not shown         Submitted on the opposite strand    
W95295 heart Gene TBC1D20, variant not shown       fully sequenced, This clone was ignored    
W95552 heart Gene TBC1D20, variant not shown       fully sequenced, This clone was ignored    
AI083569 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene TBC1D20, variant not shown         This clone was ignored    
TI_154103864   Gene TBC1D20, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C