cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
AF077831 | .a | 17 to 1907 | 1 to 1891 | exact | tiling clone, | 1891/1891 (100 %) | 1 diff (100.0 %id) | ||
AK291301 | tongue | .a | 6 to 1905 | 1 to 1900 | K128R | 1900/1900 (100 %) | 3 diff (99.9 %id) | ||
AK316568 | esophagus, tumor tissue | .a | 6 to 1556 | 1 to 1551 | exact | 1551/1551 (100 %) | 0 diff (100 %id) | ||
BC030807 | skeletal muscle | .a | 6 to 1909 | 1 to 1904 | S412P | tiling clone, available from MGC, AAA | 1904/1904 (100 %) | 3 diff (99.9 %id) | |
BE181845 | head_neck | .a | 695 to 1056 | 37 to 396 | 360/396 (90 %) | 6 diff (98.5 %id) | |||
BE182831 | head_neck | .a | 1304 to 1675 | 1 to 373 | 373/373 (100 %) | 14 diff (96.3 %id) | |||
BE715314 | head_neck | .a | 1493 to 1842 | 348 to 2 | 347/354 (98 %) | 0 diff (100 %id) | |||
BE715315 | head_neck | .a | 1491 to 1858 | 1 to 370 | 370/382 (96 %) | 9 diff (97.7 %id) | |||
BE715334 | head_neck | .a | 1576 to 1858 | 1 to 283 | 283/298 (94 %) | 2 diff (99.4 %id) | |||
BE715356 | head_neck | .a | 1493 to 1858 | 382 to 17 | 366/388 (94 %) | 0 diff (100 %id) | |||
BE715363 | head_neck | .a | 1705 to 1858 | 1 to 154 | 154/161 (95 %) | 7 diff (95.7 %id) | |||
BF355926 | head_neck | .a | 1376 to 1703 | 329 to 2 | 328/329 (99 %) | 0 diff (100 %id) | |||
BF827519 | head_normal | .a | 697 to 1028 | 7 to 337 | 331/337 (98 %) | 6 diff (98.3 %id) | |||
BQ351209 | head_neck | .a | 1563 to 1858 | 1 to 303 | 303/332 (91 %) | 21 diff (93.7 %id) | |||
BQ354050 | head_neck | .a | 1260 to 1663 | 1 to 404 | 404/404 (100 %) | 7 diff (98.3 %id) | |||
BX282192 | cervix | .a | 1267 to 1766 | 1 to 500 | 500/500 (100 %) | 0 diff (100 %id) | |||
DA420219 | cervix | .a | 1 to 562 | 7 to 568 | tiling clone, capped | 567/567 (100 %) | 0 diff (100 %id) | ||
DA420397 | cervix | .a | 7 to 501 | 2 to 497 | capped | 496/496 (100 %) | 1 diff (99.8 %id) | ||
DA420489 | cervix | .a | 7 to 561 | 2 to 556 | capped | 555/555 (100 %) | 1 diff (99.9 %id) | ||
DA420545 | cervix | .a | 7 to 557 | 2 to 552 | capped | 551/551 (100 %) | 0 diff (100 %id) | ||
DA420611 | cervix | .a | 7 to 526 | 2 to 522 | capped | 521/521 (100 %) | 2 diff (99.7 %id) | ||
DA421054 | cervix | .a | 7 to 582 | 2 to 578 | capped | 577/577 (100 %) | 2 diff (99.7 %id) | ||
DA422383 | cervix | .a | 7 to 576 | 2 to 573 | capped | 572/572 (100 %) | 2 diff (99.7 %id) | ||
DA422522 | cervix | .a | 7 to 576 | 2 to 573 | capped | 572/572 (100 %) | 3 diff (99.5 %id) | ||
DA422650 | cervix | .a | 7 to 567 | 2 to 563 | capped | 562/562 (100 %) | 1 diff (99.9 %id) | ||
CU447166 | epidermis | .a | 1103 to 1611 | 509 to 1 | Submitted on the opposite strand | 509/509 (100 %) | 2 diff (99.7 %id) | ||
AL602957 | human skeletal muscle | .a | 6 to 552 | 1 to 546 | 546/546 (100 %) | 1 diff (99.9 %id) | |||
AL712514 | human skeletal muscle | .c-u | 1 to 533 | 5 to 537 | exact | tiling clone, | 537/537 (100 %) | 3 diff (99.5 %id) | |
AL602976 | human skeletal muscle | .a | 6 to 613 | 1 to 608 | 608/608 (100 %) | 1 diff (99.9 %id) | |||
AL603032 | human skeletal muscle | .a | 6 to 549 | 1 to 544 | 544/544 (100 %) | 0 diff (100 %id) | |||
AL703280 | human skeletal muscle | .a | 5 to 436 | 1 to 432 | 432/432 (100 %) | 2 diff (99.6 %id) | |||
EL735402 | mixed | .a | 69 to 623 | 1 to 555 | 555/555 (100 %) | 0 diff (100 %id) | |||
AW084388 | esophagus, squamous cell carcinoma | .a | 1638 to 1907 | 287 to 15 | AAA | 273/273 (100 %) | 4 diff (98.6 %id) | ||
AW238323 | carcinoma in situ from retromolar trigone | .a | 1640 to 1906 | 289 to 23 | AAA | 267/267 (100 %) | 2 diff (99.3 %id) | ||
AW238371 | carcinoma in situ from retromolar trigone | .a | 671 to 1119 | 26 to 474 | Submitted on the opposite strand | 449/474 (94 %) | 6 diff (98.8 %id) | ||
AW238695 | carcinoma in situ from retromolar trigone | .a | 1574 to 1905 | 1 to 332 | Submitted on the opposite strand | 332/347 (95 %) | 6 diff (98.3 %id) | ||
AW238721 | carcinoma in situ from retromolar trigone | .a | 1412 to 1906 | 546 to 52 | AAA | 495/496 (99 %) | 9 diff (98.2 %id) | ||
AW572298 | cervix | .a | 1355 to 1906 | 554 to 3 | 552/554 (99 %) | 0 diff (100 %id) | |||
AW265324 | normal squamous epithelium, floor of mouth | .a | 1429 to 1832 | 9 to 412 | Submitted on the opposite strand | 404/412 (98 %) | 7 diff (98.4 %id) | ||
BF576119 | muscle (skeletal) | .a | 5 to 577 | 1 to 580 | 580/923 (62 %) | 22 diff (97.7 %id) | |||
DA667357 | esophagus | .a | 7 to 558 | 2 to 553 | capped | 552/552 (100 %) | 0 diff (100 %id) | ||
DA667417 | esophagus | .a | 7 to 565 | 2 to 560 | capped | 559/559 (100 %) | 0 diff (100 %id) | ||
DA667427 | esophagus | .a | 7 to 572 | 2 to 567 | capped | 566/566 (100 %) | 0 diff (100 %id) | ||
DA667436 | esophagus | .a | 7 to 570 | 2 to 565 | capped | 564/564 (100 %) | 0 diff (100 %id) | ||
DA667494 | esophagus | .a | 7 to 571 | 2 to 566 | capped | 565/565 (100 %) | 0 diff (100 %id) | ||
DA667583 | esophagus | .a | 6 to 560 | 2 to 557 | capped | 556/556 (100 %) | 1 diff (99.9 %id) | ||
DA667597 | esophagus | .a | 8 to 496 | 2 to 490 | capped | 489/489 (100 %) | 0 diff (100 %id) | ||
DA667652 | esophagus | .a | 7 to 564 | 2 to 559 | capped | 558/558 (100 %) | 0 diff (100 %id) | ||
DA667749 | esophagus | .a | 7 to 563 | 2 to 558 | capped | 557/557 (100 %) | 1 diff (99.9 %id) | ||
DA667906 | esophagus | .b | 1 to 562 | 6 to 570 | E22G N24Q C25L T26H A27S ... | tiling clone, capped | 569/569 (100 %) | 3 diff (99.5 %id) | |
DA667923 | esophagus | .a | 7 to 578 | 2 to 573 | capped | 572/572 (100 %) | 0 diff (100 %id) | ||
DA667974 | esophagus | .a | 6 to 552 | 2 to 548 | capped | 547/547 (100 %) | 0 diff (100 %id) | ||
DA668094 | esophagus | .a | 7 to 576 | 2 to 572 | capped | 571/571 (100 %) | 1 diff (99.9 %id) | ||
DA668125 | esophagus | .a | 7 to 526 | 2 to 521 | capped | 520/520 (100 %) | 0 diff (100 %id) | ||
DA668220 | esophagus | .a | 7 to 503 | 2 to 498 | capped | 497/497 (100 %) | 0 diff (100 %id) | ||
DA668362 | esophagus | .a | 7 to 538 | 2 to 534 | capped | 533/533 (100 %) | 5 diff (99.1 %id) | ||
DA668412 | esophagus | .a | 7 to 552 | 2 to 548 | capped | 547/547 (100 %) | 1 diff (99.9 %id) | ||
DA668453 | esophagus | .a | 7 to 562 | 2 to 559 | capped | 558/558 (100 %) | 2 diff (99.7 %id) | ||
DA668459 | esophagus | .a | 7 to 562 | 2 to 559 | capped | 558/558 (100 %) | 3 diff (99.5 %id) | ||
DA668518 | esophagus | .a | 7 to 573 | 2 to 568 | capped | 567/567 (100 %) | 1 diff (99.9 %id) | ||
DA668616 | esophagus | .a | 7 to 557 | 2 to 552 | capped | 551/551 (100 %) | 0 diff (100 %id) | ||
DA668622 | esophagus | .a | 7 to 567 | 2 to 562 | capped | 561/561 (100 %) | 0 diff (100 %id) | ||
DA668803 | esophagus | .a | 7 to 563 | 2 to 559 | capped | 558/558 (100 %) | 1 diff (99.9 %id) | ||
DA668812 | esophagus | .a | 1 to 576 | 2 to 577 | capped | 576/576 (100 %) | 5 diff (99.2 %id) | ||
DA668909 | esophagus | .a | 7 to 455 | 2 to 454 | capped | 453/456 (99 %) | 5 diff (99.0 %id) | ||
DA669082 | esophagus | .a | 7 to 449 | 2 to 444 | capped | 443/446 (99 %) | 2 diff (99.6 %id) | ||
DA669349 | esophagus | .a | 7 to 538 | 2 to 535 | capped | 534/534 (100 %) | 2 diff (99.7 %id) | ||
DA669497 | esophagus | .a | 7 to 561 | 2 to 560 | capped | 559/559 (100 %) | 5 diff (99.2 %id) | ||
DA669602 | esophagus | .a | 7 to 513 | 2 to 508 | capped | 507/507 (100 %) | 1 diff (99.9 %id) | ||
DA669672 | esophagus | .a | 7 to 532 | 2 to 528 | capped | 527/527 (100 %) | 1 diff (99.9 %id) | ||
DA669719 | esophagus | .a | 7 to 578 | 2 to 574 | capped | 573/573 (100 %) | 1 diff (99.9 %id) | ||
NM_016190.2 | .a | 1 to 1907 | 7 to 1913 | exact | RefSeq, | 1913/1913 (100 %) | 0 diff (100 %id) | ||
DA761363 | tongue | .a | 7 to 516 | 2 to 511 | capped | 510/510 (100 %) | 1 diff (99.9 %id) | ||
DA762090 | tongue | .a | 7 to 349 | 2 to 344 | capped | 343/343 (100 %) | 0 diff (100 %id) | ||
DA762279 | tongue | .a | 7 to 577 | 2 to 572 | capped | 571/571 (100 %) | 0 diff (100 %id) | ||
DA764097 | tongue | .a | 5 to 567 | 2 to 565 | capped | 564/564 (100 %) | 3 diff (99.5 %id) | ||
DA764383 | tongue | .a | 7 to 579 | 2 to 575 | capped | 574/574 (100 %) | 1 diff (99.9 %id) | ||
DA764507 | tongue | .a | 7 to 585 | 2 to 580 | capped | 579/579 (100 %) | 0 diff (100 %id) | ||
DA765946 | tongue | .a | 7 to 593 | 2 to 588 | capped | 587/587 (100 %) | 0 diff (100 %id) | ||
DA766723 | tongue | .a | 7 to 575 | 2 to 572 | capped | 571/571 (100 %) | 2 diff (99.7 %id) | ||
TI_1948222351 | .a | 69 to 843 | 128 to 913 | 786/1497 (52 %) | 36 diff (97.6 %id) | ||||
TI_1948222352 | .a | 69 to 976 | 136 to 1052 | 917/1296 (70 %) | 24 diff (98.2 %id) | ||||
TI_1948222353 | .a | 809 to 1555 | 890 to 135 | 756/1238 (61 %) | 0 diff (100 %id) | ||||
TI_1948222657 | .a | 69 to 774 | 129 to 834 | 706/1396 (50 %) | 47 diff (96.7 %id) | ||||
TI_1948222658 | .a | 69 to 1086 | 136 to 1140 | 1005/1198 (83 %) | 56 diff (95.4 %id) | ||||
TI_1948222659 | .a | 824 to 1555 | 860 to 125 | 736/1198 (61 %) | 0 diff (100 %id) | ||||
TI_1948222955 | .a | 69 to 796 | 128 to 863 | 736/1428 (51 %) | 28 diff (98.1 %id) | ||||
TI_1948222956 | .a | 69 to 925 | 131 to 991 | 861/1311 (65 %) | 27 diff (98.0 %id) | ||||
TI_1948222957 | .a | 832 to 1555 | 867 to 137 | 731/1315 (55 %) | 0 diff (100 %id) | ||||
TI_1948223271 | .a | 69 to 828 | 126 to 887 | 762/1384 (55 %) | 22 diff (98.5 %id) | ||||
TI_1948223272 | .a | 69 to 1179 | 135 to 1242 | AAA | 1108/1286 (86 %) | 67 diff (94.8 %id) | |||
TI_1948223273 | .a | 727 to 1555 | 963 to 127 | 837/1239 (67 %) | 0 diff (100 %id) | ||||
DB011998 | esophageal, tumor tissue | .a | 7 to 554 | 2 to 549 | capped | 548/548 (100 %) | 0 diff (100 %id) | ||
DB012015 | esophageal, tumor tissue | .a | 7 to 572 | 2 to 567 | capped | 566/566 (100 %) | 0 diff (100 %id) | ||
DB012240 | esophageal, tumor tissue | .a | 7 to 571 | 2 to 566 | capped | 565/565 (100 %) | 0 diff (100 %id) | ||
DB012368 | esophageal, tumor tissue | .a | 7 to 522 | 2 to 517 | capped | 516/517 (99 %) | 1 diff (99.9 %id) | ||
DB012806 | esophageal, tumor tissue | .a | 7 to 498 | 2 to 493 | capped | 492/492 (100 %) | 0 diff (100 %id) | ||
DB013011 | esophageal, tumor tissue | .a | 11 to 589 | 2 to 580 | capped | 579/579 (100 %) | 0 diff (100 %id) | ||
DB013097 | esophageal, tumor tissue | .a | 7 to 587 | 2 to 582 | capped | 581/581 (100 %) | 0 diff (100 %id) | ||
DB013172 | esophageal, tumor tissue | .a | 7 to 582 | 2 to 577 | capped | 576/576 (100 %) | 1 diff (99.9 %id) | ||
DB013268 | esophageal, tumor tissue | .a | 7 to 587 | 2 to 582 | capped | 581/581 (100 %) | 0 diff (100 %id) | ||
DB013655 | esophageal, tumor tissue | .a | 7 to 561 | 2 to 556 | capped | 555/555 (100 %) | 2 diff (99.7 %id) | ||
DB013772 | esophageal, tumor tissue | .a | 7 to 567 | 2 to 564 | capped | 563/563 (100 %) | 3 diff (99.5 %id) | ||
DB013895 | esophageal, tumor tissue | .a | 7 to 586 | 2 to 580 | capped | 579/579 (100 %) | 2 diff (99.7 %id) | ||
DB014324 | esophageal, tumor tissue | .a | 7 to 559 | 2 to 554 | capped | 553/553 (100 %) | 0 diff (100 %id) | ||
DB014377 | esophageal, tumor tissue | .a | 7 to 561 | 2 to 556 | capped | 555/555 (100 %) | 1 diff (99.9 %id) | ||
DB014512 | esophageal, tumor tissue | .a | 6 to 566 | 2 to 562 | capped | 561/561 (100 %) | 0 diff (100 %id) | ||
DB014530 | esophageal, tumor tissue | .a | 6 to 493 | 2 to 489 | capped | 488/488 (100 %) | 1 diff (99.8 %id) | ||
DB015057 | esophageal, tumor tissue | .a | 7 to 503 | 2 to 499 | capped | 498/498 (100 %) | 3 diff (99.4 %id) | ||
DB015175 | esophageal, tumor tissue | .a | 7 to 575 | 2 to 569 | capped | 568/568 (100 %) | 2 diff (99.7 %id) | ||
DB015297 | esophageal, tumor tissue | .a | 7 to 439 | 2 to 434 | capped | 433/436 (99 %) | 3 diff (99.4 %id) | ||
DB015470 | esophageal, tumor tissue | .a | 7 to 532 | 2 to 527 | capped | 526/526 (100 %) | 0 diff (100 %id) | ||
DB015670 | esophageal, tumor tissue | .a | 7 to 498 | 2 to 493 | capped | 492/492 (100 %) | 1 diff (99.8 %id) | ||
DB016237 | esophageal, tumor tissue | .a | 7 to 575 | 2 to 571 | capped | 570/570 (100 %) | 2 diff (99.7 %id) | ||
DB016348 | esophageal, tumor tissue | .a | 7 to 582 | 2 to 577 | capped | 576/576 (100 %) | 0 diff (100 %id) | ||
DB016602 | esophageal, tumor tissue | .a | 7 to 563 | 2 to 558 | capped | 557/557 (100 %) | 0 diff (100 %id) | ||
DB017157 | esophageal, tumor tissue | .a | 7 to 526 | 2 to 525 | capped | 524/524 (100 %) | 4 diff (99.3 %id) | ||
DB017795 | esophageal, tumor tissue | .a | 10 to 576 | 2 to 568 | capped | 567/567 (100 %) | 0 diff (100 %id) | ||
DB018013 | esophageal, tumor tissue | .a | 7 to 574 | 2 to 569 | capped | 568/568 (100 %) | 0 diff (100 %id) | ||
DB018287 | esophageal, tumor tissue | .a | 7 to 294 | 2 to 287 | capped | 286/286 (100 %) | 4 diff (98.7 %id) | ||
DB018421 | esophageal, tumor tissue | .a | 7 to 574 | 2 to 569 | capped | 568/568 (100 %) | 0 diff (100 %id) | ||
DB018596 | esophageal, tumor tissue | .a | 7 to 586 | 2 to 581 | capped | 580/580 (100 %) | 0 diff (100 %id) | ||
DB018647 | esophageal, tumor tissue | .a | 7 to 513 | 2 to 508 | capped | 507/507 (100 %) | 0 diff (100 %id) | ||
DB018756 | esophageal, tumor tissue | .a | 7 to 569 | 2 to 564 | capped | 563/563 (100 %) | 1 diff (99.9 %id) | ||
DB018768 | esophageal, tumor tissue | .a | 7 to 498 | 2 to 495 | capped | 494/494 (100 %) | 2 diff (99.6 %id) | ||
DB018909 | esophageal, tumor tissue | .a | 7 to 582 | 2 to 577 | capped | 576/576 (100 %) | 0 diff (100 %id) | ||
DB018955 | esophageal, tumor tissue | .a | 7 to 496 | 2 to 492 | capped | 491/491 (100 %) | 1 diff (99.8 %id) | ||
DB019194 | esophageal, tumor tissue | .a | 7 to 590 | 2 to 585 | capped | 584/584 (100 %) | 0 diff (100 %id) | ||
DB019270 | esophageal, tumor tissue | .a | 1 to 575 | 7 to 582 | capped | 581/581 (100 %) | 1 diff (99.9 %id) | ||
DB019441 | esophageal, tumor tissue | .a | 7 to 562 | 2 to 559 | capped | 558/558 (100 %) | 2 diff (99.7 %id) | ||
AK298640 | esophagus | .a | 7 to 562 | 2 to 559 | Suspected internal deletion, this clone was ignored | 558/558 (100 %) | 2 diff (99.7 %id) | ||
DC364980 | esophagus | Gene CRNN, variant not shown | Suspected internal deletion, this clone was ignored |
? | Gene Summary | Gene on genome | mRNA:.a, .b, .c-u | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes DC |