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Gene CRNNTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
132 supporting clones for gene CRNN back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF077831   .a 17 to 1907 1 to 1891 exact tiling clone,   1891/1891
(100 %)
1 diff
(100.0 %id)
AK291301 tongue .a 6 to 1905 1 to 1900 K128R     1900/1900
(100 %)
3 diff
(99.9 %id)
AK316568 esophagus, tumor tissue .a 6 to 1556 1 to 1551 exact     1551/1551
(100 %)
0 diff
(100 %id)
BC030807 skeletal muscle .a 6 to 1909 1 to 1904 S412P tiling clone, available from MGC, AAA   1904/1904
(100 %)
3 diff
(99.9 %id)
BE181845 head_neck .a 695 to 1056 37 to 396       360/396
(90 %)
6 diff
(98.5 %id)
BE182831 head_neck .a 1304 to 1675 1 to 373       373/373
(100 %)
14 diff
(96.3 %id)
BE715314 head_neck .a 1493 to 1842 348 to 2       347/354
(98 %)
0 diff
(100 %id)
BE715315 head_neck .a 1491 to 1858 1 to 370       370/382
(96 %)
9 diff
(97.7 %id)
BE715334 head_neck .a 1576 to 1858 1 to 283       283/298
(94 %)
2 diff
(99.4 %id)
BE715356 head_neck .a 1493 to 1858 382 to 17       366/388
(94 %)
0 diff
(100 %id)
BE715363 head_neck .a 1705 to 1858 1 to 154       154/161
(95 %)
7 diff
(95.7 %id)
BF355926 head_neck .a 1376 to 1703 329 to 2       328/329
(99 %)
0 diff
(100 %id)
BF827519 head_normal .a 697 to 1028 7 to 337       331/337
(98 %)
6 diff
(98.3 %id)
BQ351209 head_neck .a 1563 to 1858 1 to 303       303/332
(91 %)
21 diff
(93.7 %id)
BQ354050 head_neck .a 1260 to 1663 1 to 404       404/404
(100 %)
7 diff
(98.3 %id)
BX282192 cervix .a 1267 to 1766 1 to 500       500/500
(100 %)
0 diff
(100 %id)
DA420219 cervix .a 1 to 562 7 to 568   tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
DA420397 cervix .a 7 to 501 2 to 497   capped   496/496
(100 %)
1 diff
(99.8 %id)
DA420489 cervix .a 7 to 561 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA420545 cervix .a 7 to 557 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA420611 cervix .a 7 to 526 2 to 522   capped   521/521
(100 %)
2 diff
(99.7 %id)
DA421054 cervix .a 7 to 582 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
DA422383 cervix .a 7 to 576 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA422522 cervix .a 7 to 576 2 to 573   capped   572/572
(100 %)
3 diff
(99.5 %id)
DA422650 cervix .a 7 to 567 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
CU447166 epidermis .a 1103 to 1611 509 to 1     Submitted on the opposite strand 509/509
(100 %)
2 diff
(99.7 %id)
AL602957 human skeletal muscle .a 6 to 552 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
AL712514 human skeletal muscle .c-u 1 to 533 5 to 537 exact tiling clone,   537/537
(100 %)
3 diff
(99.5 %id)
AL602976 human skeletal muscle .a 6 to 613 1 to 608       608/608
(100 %)
1 diff
(99.9 %id)
AL603032 human skeletal muscle .a 6 to 549 1 to 544       544/544
(100 %)
0 diff
(100 %id)
AL703280 human skeletal muscle .a 5 to 436 1 to 432       432/432
(100 %)
2 diff
(99.6 %id)
EL735402 mixed .a 69 to 623 1 to 555       555/555
(100 %)
0 diff
(100 %id)
AW084388 esophagus, squamous cell carcinoma .a 1638 to 1907 287 to 15   AAA   273/273
(100 %)
4 diff
(98.6 %id)
AW238323 carcinoma in situ from retromolar trigone .a 1640 to 1906 289 to 23   AAA   267/267
(100 %)
2 diff
(99.3 %id)
AW238371 carcinoma in situ from retromolar trigone .a 671 to 1119 26 to 474     Submitted on the opposite strand 449/474
(94 %)
6 diff
(98.8 %id)
AW238695 carcinoma in situ from retromolar trigone .a 1574 to 1905 1 to 332     Submitted on the opposite strand 332/347
(95 %)
6 diff
(98.3 %id)
AW238721 carcinoma in situ from retromolar trigone .a 1412 to 1906 546 to 52   AAA   495/496
(99 %)
9 diff
(98.2 %id)
AW572298 cervix .a 1355 to 1906 554 to 3       552/554
(99 %)
0 diff
(100 %id)
AW265324 normal squamous epithelium, floor of mouth .a 1429 to 1832 9 to 412     Submitted on the opposite strand 404/412
(98 %)
7 diff
(98.4 %id)
BF576119 muscle (skeletal) .a 5 to 577 1 to 580       580/923
(62 %)
22 diff
(97.7 %id)
DA667357 esophagus .a 7 to 558 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA667417 esophagus .a 7 to 565 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA667427 esophagus .a 7 to 572 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA667436 esophagus .a 7 to 570 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA667494 esophagus .a 7 to 571 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA667583 esophagus .a 6 to 560 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA667597 esophagus .a 8 to 496 2 to 490   capped   489/489
(100 %)
0 diff
(100 %id)
DA667652 esophagus .a 7 to 564 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA667749 esophagus .a 7 to 563 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA667906 esophagus .b 1 to 562 6 to 570 E22G N24Q C25L T26H A27S ... tiling clone, capped   569/569
(100 %)
3 diff
(99.5 %id)
DA667923 esophagus .a 7 to 578 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA667974 esophagus .a 6 to 552 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA668094 esophagus .a 7 to 576 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA668125 esophagus .a 7 to 526 2 to 521   capped   520/520
(100 %)
0 diff
(100 %id)
DA668220 esophagus .a 7 to 503 2 to 498   capped   497/497
(100 %)
0 diff
(100 %id)
DA668362 esophagus .a 7 to 538 2 to 534   capped   533/533
(100 %)
5 diff
(99.1 %id)
DA668412 esophagus .a 7 to 552 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA668453 esophagus .a 7 to 562 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
DA668459 esophagus .a 7 to 562 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DA668518 esophagus .a 7 to 573 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA668616 esophagus .a 7 to 557 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA668622 esophagus .a 7 to 567 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA668803 esophagus .a 7 to 563 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA668812 esophagus .a 1 to 576 2 to 577   capped   576/576
(100 %)
5 diff
(99.2 %id)
DA668909 esophagus .a 7 to 455 2 to 454   capped   453/456
(99 %)
5 diff
(99.0 %id)
DA669082 esophagus .a 7 to 449 2 to 444   capped   443/446
(99 %)
2 diff
(99.6 %id)
DA669349 esophagus .a 7 to 538 2 to 535   capped   534/534
(100 %)
2 diff
(99.7 %id)
DA669497 esophagus .a 7 to 561 2 to 560   capped   559/559
(100 %)
5 diff
(99.2 %id)
DA669602 esophagus .a 7 to 513 2 to 508   capped   507/507
(100 %)
1 diff
(99.9 %id)
DA669672 esophagus .a 7 to 532 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DA669719 esophagus .a 7 to 578 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
NM_016190.2   .a 1 to 1907 7 to 1913 exact RefSeq,   1913/1913
(100 %)
0 diff
(100 %id)
DA761363 tongue .a 7 to 516 2 to 511   capped   510/510
(100 %)
1 diff
(99.9 %id)
DA762090 tongue .a 7 to 349 2 to 344   capped   343/343
(100 %)
0 diff
(100 %id)
DA762279 tongue .a 7 to 577 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA764097 tongue .a 5 to 567 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
DA764383 tongue .a 7 to 579 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA764507 tongue .a 7 to 585 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA765946 tongue .a 7 to 593 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA766723 tongue .a 7 to 575 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
TI_1948222351   .a 69 to 843 128 to 913       786/1497
(52 %)
36 diff
(97.6 %id)
TI_1948222352   .a 69 to 976 136 to 1052       917/1296
(70 %)
24 diff
(98.2 %id)
TI_1948222353   .a 809 to 1555 890 to 135       756/1238
(61 %)
0 diff
(100 %id)
TI_1948222657   .a 69 to 774 129 to 834       706/1396
(50 %)
47 diff
(96.7 %id)
TI_1948222658   .a 69 to 1086 136 to 1140       1005/1198
(83 %)
56 diff
(95.4 %id)
TI_1948222659   .a 824 to 1555 860 to 125       736/1198
(61 %)
0 diff
(100 %id)
TI_1948222955   .a 69 to 796 128 to 863       736/1428
(51 %)
28 diff
(98.1 %id)
TI_1948222956   .a 69 to 925 131 to 991       861/1311
(65 %)
27 diff
(98.0 %id)
TI_1948222957   .a 832 to 1555 867 to 137       731/1315
(55 %)
0 diff
(100 %id)
TI_1948223271   .a 69 to 828 126 to 887       762/1384
(55 %)
22 diff
(98.5 %id)
TI_1948223272   .a 69 to 1179 135 to 1242   AAA   1108/1286
(86 %)
67 diff
(94.8 %id)
TI_1948223273   .a 727 to 1555 963 to 127       837/1239
(67 %)
0 diff
(100 %id)
DB011998 esophageal, tumor tissue .a 7 to 554 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB012015 esophageal, tumor tissue .a 7 to 572 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB012240 esophageal, tumor tissue .a 7 to 571 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB012368 esophageal, tumor tissue .a 7 to 522 2 to 517   capped   516/517
(99 %)
1 diff
(99.9 %id)
DB012806 esophageal, tumor tissue .a 7 to 498 2 to 493   capped   492/492
(100 %)
0 diff
(100 %id)
DB013011 esophageal, tumor tissue .a 11 to 589 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB013097 esophageal, tumor tissue .a 7 to 587 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB013172 esophageal, tumor tissue .a 7 to 582 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB013268 esophageal, tumor tissue .a 7 to 587 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB013655 esophageal, tumor tissue .a 7 to 561 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DB013772 esophageal, tumor tissue .a 7 to 567 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DB013895 esophageal, tumor tissue .a 7 to 586 2 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
DB014324 esophageal, tumor tissue .a 7 to 559 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB014377 esophageal, tumor tissue .a 7 to 561 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DB014512 esophageal, tumor tissue .a 6 to 566 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB014530 esophageal, tumor tissue .a 6 to 493 2 to 489   capped   488/488
(100 %)
1 diff
(99.8 %id)
DB015057 esophageal, tumor tissue .a 7 to 503 2 to 499   capped   498/498
(100 %)
3 diff
(99.4 %id)
DB015175 esophageal, tumor tissue .a 7 to 575 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DB015297 esophageal, tumor tissue .a 7 to 439 2 to 434   capped   433/436
(99 %)
3 diff
(99.4 %id)
DB015470 esophageal, tumor tissue .a 7 to 532 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DB015670 esophageal, tumor tissue .a 7 to 498 2 to 493   capped   492/492
(100 %)
1 diff
(99.8 %id)
DB016237 esophageal, tumor tissue .a 7 to 575 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DB016348 esophageal, tumor tissue .a 7 to 582 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB016602 esophageal, tumor tissue .a 7 to 563 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB017157 esophageal, tumor tissue .a 7 to 526 2 to 525   capped   524/524
(100 %)
4 diff
(99.3 %id)
DB017795 esophageal, tumor tissue .a 10 to 576 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB018013 esophageal, tumor tissue .a 7 to 574 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB018287 esophageal, tumor tissue .a 7 to 294 2 to 287   capped   286/286
(100 %)
4 diff
(98.7 %id)
DB018421 esophageal, tumor tissue .a 7 to 574 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB018596 esophageal, tumor tissue .a 7 to 586 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB018647 esophageal, tumor tissue .a 7 to 513 2 to 508   capped   507/507
(100 %)
0 diff
(100 %id)
DB018756 esophageal, tumor tissue .a 7 to 569 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB018768 esophageal, tumor tissue .a 7 to 498 2 to 495   capped   494/494
(100 %)
2 diff
(99.6 %id)
DB018909 esophageal, tumor tissue .a 7 to 582 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB018955 esophageal, tumor tissue .a 7 to 496 2 to 492   capped   491/491
(100 %)
1 diff
(99.8 %id)
DB019194 esophageal, tumor tissue .a 7 to 590 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB019270 esophageal, tumor tissue .a 1 to 575 7 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DB019441 esophageal, tumor tissue .a 7 to 562 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
AK298640 esophagus .a 7 to 562 2 to 559     Suspected internal deletion, this clone was ignored 558/558
(100 %)
2 diff
(99.7 %id)
DC364980 esophagus Gene CRNN, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC