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Gene C1RLTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
133 supporting clones for gene C1RL back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB160808 thymus .a 1 to 570 4 to 573   tiling clone, capped   572/572
(100 %)
2 diff
(99.7 %id)
DA593341 lung .a 1 to 534 3 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
NM_016546.2   .a 1 to 3397 2 to 3398 exact RefSeq,   3398/3398
(100 %)
0 diff
(100 %id)
DB151286 thymus .a 1 to 559 3 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA309054 hippocampus .a 1 to 559 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DB113812 thymus .a 1 to 559 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
AL518685 brain, neuroblastoma, neuroblastoma cells .a 16 to 1161 1 to 1140       1140/1140
(100 %)
9 diff
(99.3 %id)
BM152250 leukopheresis .a 25 to 386 1 to 362       362/362
(100 %)
11 diff
(97.0 %id)
DB161945 thymus .a 36 to 612 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB237389 trachea .a 36 to 547 2 to 513   capped   512/512
(100 %)
1 diff
(99.9 %id)
DB208110 trachea .a 43 to 356 2 to 315   capped   314/314
(100 %)
1 diff
(99.7 %id)
CR592485 Placenta Cot 25-normalized .a 50 to 2037 1 to 1988 I285V tiling clone,   1988/1988
(100 %)
1 diff
(100.0 %id)
BX398918 Placenta Cot 25-normalized .a 50 to 978 1 to 924   fully sequenced,   924/924
(100 %)
9 diff
(99.1 %id)
DB148935 thymus .a 50 to 615 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
CB985864 Pooled-Glandular .a 60 to 399 1 to 340   available from MGC,   340/917
(37 %)
9 diff
(99.1 %id)
BX504591   .a 65 to 365 1 to 301       301/301
(100 %)
12 diff
(96.1 %id)
AK222802 Liver .a 68 to 1985 1 to 1918 C94R V99A I349M tiling clone,   1918/1918
(100 %)
3 diff
(99.9 %id)
AF178985   .a 76 to 3392 1 to 3318 I285V tiling clone, AAA   3318/3318
(100 %)
7 diff
(99.8 %id)
DA870485 Prostate .a 78 to 363 2 to 287   capped   286/286
(100 %)
0 diff
(100 %id)
CN363467 embryonic stem cells, cell lines H1, H7, andH9 .a 79 to 736 1 to 658       658/658
(100 %)
3 diff
(99.6 %id)
BP325376 Pancreas .a 85 to 667 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA743971   .a 86 to 547 2 to 463   capped   462/462
(100 %)
0 diff
(100 %id)
CN363469 embryonic stem cells, cell lines H1, H7, andH9 .a 87 to 525 1 to 439       439/439
(100 %)
0 diff
(100 %id)
DA040183 bladder .a 107 to 606 2 to 501   capped   500/501
(99 %)
4 diff
(99.3 %id)
BG327866 Kidney, renal cell adenocarcinoma .a 371 to 1062 1 to 687       679/971
(69 %)
15 diff
(98.5 %id)
AI928295 2 pooled tumors (clear cell type), Kidney .a 727 to 976 252 to 3       250/313
(79 %)
0 diff
(100 %id)
BX398917 Placenta Cot 25-normalized .a 965 to 2037 1059 to 1   fully sequenced,   1059/1059
(100 %)
24 diff
(97.8 %id)
BG287612 bladder, transitional cell papilloma, cell line .a 1618 to 2308 1 to 688       688/688
(100 %)
12 diff
(98.3 %id)
BI259261 cervical carcinoma cell line, cervix .a 1686 to 2291 1 to 619       619/619
(100 %)
26 diff
(95.8 %id)
BF892284 marrow .a 1800 to 2279 10 to 488       479/488
(98 %)
9 diff
(98.2 %id)
AL518684 brain, neuroblastoma, neuroblastoma cells .a 1839 to 3037 1188 to 1   tiling clone,   1188/1189
(99 %)
30 diff
(97.5 %id)
AA149188   .a 1849 to 2147 1 to 307       307/310
(99 %)
9 diff
(97.1 %id)
BF881005 lung_tumor .a 2046 to 2455 421 to 14     Submitted on the opposite strand 408/421
(96 %)
0 diff
(100 %id)
BM989007 Bone, Subchondral Bone .a 2125 to 2906 790 to 19   AAA   772/774
(99 %)
10 diff
(98.8 %id)
BG680601 skin, squamous cell carcinoma .a 2132 to 2769 1 to 645       645/645
(100 %)
9 diff
(98.7 %id)
BG995721 head_neck .a 2185 to 2645 466 to 5       462/467
(98 %)
0 diff
(100 %id)
BF964466 nervous_normal .a 2304 to 2535 31 to 264       234/271
(86 %)
6 diff
(97.8 %id)
BI335215 cervical carcinoma cell line, cervix .a 2375 to 2935 1 to 574       574/765
(75 %)
25 diff
(96.8 %id)
BI335145 cervical carcinoma cell line, cervix .a 2376 to 3100 1 to 736       736/736
(100 %)
26 diff
(96.5 %id)
AA533306 invasive prostate tumor, Prostate .a 2399 to 2741 348 to 6       343/355
(96 %)
0 diff
(100 %id)
AI826845 adenocarcinoma, Pancreas .a 2442 to 2907 466 to 1       466/466
(100 %)
3 diff
(99.4 %id)
AW082744 esophagus, squamous cell carcinoma .a 2491 to 2816 326 to 1       326/326
(100 %)
0 diff
(100 %id)
AA053531 colon, tumor .a 2536 to 2846 1 to 311       311/311
(100 %)
2 diff
(99.4 %id)
BF680273 Prostate .a 2541 to 3229 1 to 681       681/864
(78 %)
23 diff
(97.4 %id)
BG568478 Liver .a 2541 to 3009 1 to 479       479/480
(99 %)
23 diff
(95.3 %id)
AI870204 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2572 to 2899 328 to 1       328/328
(100 %)
3 diff
(99.1 %id)
AA377515 synovial membrane .a 2580 to 2851 1 to 272       272/272
(100 %)
5 diff
(98.2 %id)
TI_154017091   .a 2617 to 3208 683 to 95   AAA   589/712
(82 %)
0 diff
(100 %id)
BU540370 mixed (pool of 40 RNAs) .a 2629 to 2899 1 to 271   AAA   271/271
(100 %)
4 diff
(98.6 %id)
CA437486 lung, Metastatic Chondrosarcoma .a 2637 to 3208 587 to 19   AAA   569/569
(100 %)
2 diff
(99.7 %id)
CB137677 Liver .a 2667 to 3250 1 to 584       584/584
(100 %)
2 diff
(99.7 %id)
CB138466 Liver .a 2667 to 3033 1 to 367       367/367
(100 %)
1 diff
(99.8 %id)
CB141248 Liver .a 2667 to 3221 1 to 555       555/555
(100 %)
2 diff
(99.7 %id)
BE719449 head_neck .a 2776 to 3185 444 to 35       410/704
(58 %)
0 diff
(100 %id)
BF725690 eye, Iris .a 2780 to 3222 1 to 443       443/443
(100 %)
1 diff
(99.8 %id)
TI_159715778   .a 2780 to 3390 59 to 668     Submitted on the opposite strand 610/1131
(53 %)
3 diff
(99.8 %id)
CB852428 Human Lung Epithelial cells, lung .a 2780 to 3390 8 to 617     Submitted on the opposite strand 610/623
(97 %)
3 diff
(99.6 %id)
BU628709 Bone, Enchondroma cell line .a 2807 to 3392 604 to 19   AAA   586/586
(100 %)
1 diff
(99.9 %id)
R55526 breast .a 2826 to 3085 1 to 263   fully sequenced,   263/263
(100 %)
3 diff
(98.9 %id)
BM701809 eye, optic nerve .a 2828 to 3238 1 to 411       411/411
(100 %)
2 diff
(99.6 %id)
BX117021 breast .a 2829 to 3392 1 to 565   AAA   565/565
(100 %)
3 diff
(99.5 %id)
FN161212 breast carcinoma .a 2841 to 2927 1 to 88       88/88
(100 %)
4 diff
(95.5 %id)
AA345484 gall bladder .a 2853 to 3183 1 to 330       330/330
(100 %)
1 diff
(99.7 %id)
AA345638 gall bladder .a 2853 to 3107 1 to 255       255/255
(100 %)
0 diff
(100 %id)
W19114 lung .a 2858 to 3044 1 to 206   fully sequenced,   206/206
(100 %)
0 diff
(100 %id)
AA343907 gall bladder .a 2877 to 3208 1 to 331       331/332
(99 %)
6 diff
(98.2 %id)
AW956565   .a 2878 to 3353 1 to 476       476/477
(99 %)
2 diff
(99.6 %id)
AA149238   .a 2903 to 3218 319 to 1       319/373
(85 %)
8 diff
(97.9 %id)
N91560 lung .a 3014 to 3393 371 to 1   tiling clone, fully sequenced,   371/371
(100 %)
1 diff
(99.8 %id)
R55527 breast .a 3055 to 3390 346 to 1   fully sequenced,   346/346
(100 %)
11 diff
(96.9 %id)
AA052999 colon, tumor .a 3278 to 3393 115 to 1       115/116
(99 %)
1 diff
(99.2 %id)
AK314299 trachea .b 1 to 1568 2 to 1569 G105S tiling clone,   1569/1569
(100 %)
1 diff
(100.0 %id)
DR004214 Liver .c 1 to 590 10 to 599 G12W A56T P122X P127X E137X ... tiling clone,   592/599
(98 %)
8 diff
(98.7 %id)
BP293949 lung .d 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
0 diff
(100 %id)
BC062428 Glandular pool- thyroid, parathyroid,adrenal cortex, pineal gland, submandibular gland. .e 1 to 812 5 to 816 exact tiling clone, available from MGC, AAA   812/812
(100 %)
1 diff
(99.9 %id)
CD048123 embryonic stem cells, WA01, passage 38 .e 69 to 624 93 to 658       566/1071
(52 %)
32 diff
(97.1 %id)
AA868736 pooled .e 560 to 813 255 to 1       255/255
(100 %)
9 diff
(96.5 %id)
AI392811 B-cell, chronic lymphotic leukemia .f 1 to 532 530 to 1 F2L P24Q S25A Q26S F27S ... tiling clone,   530/533
(99 %)
4 diff
(99.3 %id)
BF089175 head_neck .g-u -9 to 302 318 to 7   tiling clone,   312/333
(93 %)
0 diff
(100 %id)
DA013447 adrenal gland .g-u 5 to 548 2 to 547   tiling clone, capped   546/546
(100 %)
3 diff
(99.5 %id)
BQ379721 uterus_tumor .g-u 18 to 357 20 to 363       344/363
(94 %)
6 diff
(98.4 %id)
AI302099 2 pooled tumors (clear cell type), Kidney .g-u 235 to 610 387 to 12   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 376/387
(97 %)
0 diff
(100 %id)
AL701993 human skeletal muscle .g-u 297 to 775 1 to 479   tiling clone,   479/479
(100 %)
0 diff
(100 %id)
BQ332406 lung_tumor .g-u 451 to 572 145 to 25       121/145
(83 %)
0 diff
(100 %id)
CN363468 embryonic stem cells, cell lines H1, H7, andH9 .g-u 782 to 1339 560 to 3   tiling clone, Submitted on the opposite strand 558/560
(99 %)
0 diff
(100 %id)
AW796471 uterus .g-u 928 to 1342 419 to 7       413/421
(98 %)
0 diff
(100 %id)
AW081702 colon, moderately differentiated adenocarcinoma .g-u 960 to 1408 465 to 17   tiling clone, AAA   449/451
(99 %)
2 diff
(99.6 %id)
AA366077 Pancreas .g-u 989 to 1169 1 to 181       181/181
(100 %)
1 diff
(99.5 %id)
BG998806 head_neck .g-u 1150 to 1326 1 to 178       178/178
(100 %)
7 diff
(96.1 %id)
BG998984 head_neck .g-u 1153 to 1326 1 to 173       173/173
(100 %)
7 diff
(96.0 %id)
DA994105 synovial membrane tissue from rheumatioidarthritis .h 1 to 538 2 to 539   tiling clone, capped   538/538
(100 %)
1 diff
(99.9 %id)
DA814893   .h 114 to 687 2 to 575 exact tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
BM727362 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .h 277 to 381 1 to 105   fully sequenced,   105/105
(100 %)
0 diff
(100 %id)
BM681739 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .h 320 to 856 554 to 21   fully sequenced,   534/554
(96 %)
1 diff
(99.9 %id)
BF435451 pooled .h 424 to 858 438 to 4       435/443
(98 %)
2 diff
(99.6 %id)
AI435141 pooled .h 460 to 858 402 to 4   tiling clone,   399/402
(99 %)
0 diff
(100 %id)
AI803046 pooled .h 490 to 858 372 to 4       369/372
(99 %)
0 diff
(100 %id)
AW206706   .h 546 to 858 330 to 18   AAA   313/313
(100 %)
0 diff
(100 %id)
BX384560.
matches multiple genes
  .i 1 to 447 3 to 449 exact tiling clone, also hits gene C1R 449/449
(100 %)
0 diff
(100 %id)
CA952813 Pancreas, Purified pancreatic islet .j 1 to 354 1 to 354   tiling clone,   354/354
(100 %)
0 diff
(100 %id)
AA846117 Spleen .j 105 to 644 543 to 3       541/543
(99 %)
0 diff
(100 %id)
TI_149315068   .j 191 to 890 773 to 76   AAA   698/962
(72 %)
4 diff
(99.6 %id)
CA311908 Human Lung Epithelial cells, lung .j 207 to 890 702 to 19   tiling clone, AAA   684/684
(100 %)
0 diff
(100 %id)
BF934561 nervous_tumor .j 233 to 438 16 to 221       206/221
(93 %)
6 diff
(97.3 %id)
BQ045094 lung, Primary Lung Cystic Fibrosis EpithelialCells .j 242 to 890 665 to 19   AAA   647/647
(100 %)
2 diff
(99.7 %id)
CA952612 Pancreas, Purified pancreatic islet .j 634 to 1147 514 to 1   tiling clone,   514/514
(100 %)
0 diff
(100 %id)
AW135735   .j 651 to 887 256 to 20       237/266
(89 %)
0 diff
(100 %id)
AV754799 pituitary tumor .j 943 to 1317 1 to 375   tiling clone,   375/377
(99 %)
1 diff
(99.8 %id)
BG057233 dorsal root ganglia .j 984 to 1314 331 to 1       331/331
(100 %)
0 diff
(100 %id)
AV682901 hepatocellular carcinoma .k 1 to 504 1 to 502 exact tiling clone,   502/509
(98 %)
5 diff
(99.1 %id)
AV683624 hepatocellular carcinoma .k 1 to 363 1 to 363 exact     363/384
(94 %)
4 diff
(99.0 %id)
AI582696 anaplastic oligodendroglioma, brain .k 205 to 702 499 to 2       498/569
(87 %)
0 diff
(100 %id)
AA847685 carcinoid, lung .k 208 to 698 496 to 6       491/496
(98 %)
0 diff
(100 %id)
AI570408 anaplastic oligodendroglioma, brain .k 214 to 702 491 to 2       490/491
(99 %)
0 diff
(100 %id)
W68477 heart .k 221 to 618 1 to 398   fully sequenced,   398/398
(100 %)
0 diff
(100 %id)
AI446293 adenocarcinoma, Pancreas .k 233 to 707 476 to 1       476/476
(100 %)
5 diff
(99.0 %id)
BU618478 Cell Line, Chondrosarcoma .k 243 to 703 477 to 17   AAA   461/613
(75 %)
0 diff
(100 %id)
AI610758 serous papillary carcinoma, high grade, 2pooled tumors, uterus .k 245 to 703 473 to 14   AAA   460/460
(100 %)
5 diff
(99.0 %id)
BQ020898 lung, Metastatic Chondrosarcoma .k 257 to 703 464 to 17   AAA   448/456
(98 %)
2 diff
(99.6 %id)
AA953809 carcinoid, lung .k 272 to 698 431 to 6       426/431
(98 %)
0 diff
(100 %id)
BJ993710 hepatoblastoma .k 287 to 668 382 to 1       382/382
(100 %)
1 diff
(99.8 %id)
AI076372 liver and spleen .k 288 to 703 435 to 18   AAA   418/418
(100 %)
3 diff
(99.3 %id)
W03523 melanocyte .k 294 to 703 1 to 408       408/411
(99 %)
5 diff
(98.8 %id)
AI049840   .k 297 to 704 412 to 4       409/412
(99 %)
0 diff
(100 %id)
CB048171 Prostate .k 305 to 703 1 to 398   AAA   398/398
(100 %)
13 diff
(96.8 %id)
AA703122 liver and spleen .k 306 to 698 398 to 6       393/398
(98 %)
0 diff
(100 %id)
AW263111 pooled .k 327 to 704 386 to 8       379/386
(98 %)
0 diff
(100 %id)
N67677 melanocyte .k 332 to 703 389 to 18   AAA   372/372
(100 %)
2 diff
(99.5 %id)
AA531260 normal prostate, Prostate .k 338 to 703 367 to 1       367/367
(100 %)
1 diff
(99.8 %id)
AA662418 normal prostate, Prostate .k 338 to 703 367 to 1       367/367
(100 %)
1 diff
(99.8 %id)
AI419149 brain, glioblastoma (pooled) .k 344 to 703 362 to 1       362/362
(100 %)
3 diff
(99.2 %id)
BF436283 pooled .k 350 to 704 359 to 5   tiling clone,   355/359
(98 %)
0 diff
(100 %id)
CD678518 eye, Trabecular meshwork .k 365 to 703 1 to 339   AAA   339/339
(100 %)
0 diff
(100 %id)
AA427778 ovarian tumor, ovary .k 378 to 703 327 to 1       327/327
(100 %)
3 diff
(99.1 %id)
AI244118 Kidney .k 448 to 704 258 to 1       258/258
(100 %)
2 diff
(99.3 %id)
W68296 heart .k 588 to 708 120 to 1   tiling clone, fully sequenced,   120/120
(100 %)
1 diff
(99.2 %id)
AW367708 head_neck .l-u 1 to 580 618 to 36   tiling clone,   583/618
(94 %)
0 diff
(100 %id)
FN131973 breast carcinoma .l-u 515 to 625 112 to 1   tiling clone, Submitted on the opposite strand 112/112
(100 %)
1 diff
(99.2 %id)
BQ333128 lung_tumor .m-u 1 to 280 1 to 279 P2A I3T D6* tiling clone,   279/279
(100 %)
16 diff
(94.3 %id)
BI017484 lung_tumor .m-u 5 to 280 13 to 285   tiling clone,   273/285
(95 %)
7 diff
(97.6 %id)
BE719463 head_neck Gene C1RL, variant not shown         This clone was ignored    
BG946062 bladder_tumor Gene C1RL, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i, .j, .k, .l-u, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI