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Gene CAPRIN2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
318 supporting clones for gene CAPRIN2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX481304   .a 1 to 535 5 to 540   tiling clone,   536/540
(99 %)
6 diff
(98.9 %id)
NM_001002259.1   .a 21 to 4505 1 to 4485 exact RefSeq, AAA   4485/4485
(100 %)
0 diff
(100 %id)
BM802400 eye, retinoblastoma .a 26 to 709 1 to 689   tiling clone,   689/989
(69 %)
18 diff
(98.2 %id)
DR001588 fetal brain .a 122 to 818 8 to 704       697/704
(99 %)
6 diff
(99.2 %id)
CN399889 embryonic stem cells, cell lines H1, H7, andH9 .a 248 to 966 1 to 720       720/720
(100 %)
8 diff
(98.9 %id)
DR155533 human embryonic stem cells differentiated toan early endodermal cell type .a 308 to 978 1 to 670   tiling clone,   670/670
(100 %)
2 diff
(99.8 %id)
BG961563 colon .a 796 to 1224 1 to 431   tiling clone,   431/431
(100 %)
12 diff
(97.3 %id)
AW892778 nervous_normal .a 858 to 1219 16 to 377       362/377
(96 %)
6 diff
(98.5 %id)
CN399886 embryonic stem cells, cell lines H1, H7, andH9 .a 973 to 1168 1 to 196       196/196
(100 %)
2 diff
(99.0 %id)
BF366471 nervous_tumor .a 1063 to 1341 20 to 298   tiling clone,   279/298
(93 %)
8 diff
(97.4 %id)
DW466820 Liver .a 1120 to 1410 60 to 350   tiling clone,   291/350
(83 %)
13 diff
(96.3 %id)
DA946406 Spleen .a 1456 to 2034 2 to 581   tiling clone, capped   580/580
(100 %)
1 diff
(99.9 %id)
BG941654 blood .a 1486 to 1737 1 to 251   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 251/276
(90 %)
1 diff
(99.7 %id)
CX865292 embryonic stem .a 1679 to 2502 11 to 834   tiling clone,   824/834
(98 %)
6 diff
(99.3 %id)
DA029754   .a 1688 to 2259 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BQ953103 epidermoid carcinoma, cell line, lung .a 1744 to 2497 1 to 760       760/911
(83 %)
7 diff
(99.3 %id)
BM801504 duodenal adenocarcinoma, cell line, small intestine .a 1760 to 2635 1 to 885       885/933
(94 %)
26 diff
(97.3 %id)
CF780840 Pooled Chondrosarcoma Tumor cells .a 1882 to 2651 8 to 773       766/936
(81 %)
14 diff
(98.6 %id)
CB140276 Liver .a 1910 to 2352 1 to 443       443/443
(100 %)
1 diff
(99.8 %id)
CN399884 embryonic stem cells, cell lines H1, H7, andH9 .a 1977 to 2570 1 to 594       594/594
(100 %)
3 diff
(99.5 %id)
CB110602 Liver .a 2029 to 2573 1 to 545       545/545
(100 %)
1 diff
(99.9 %id)
EL593433 epidermis, skin .a 2030 to 2689 675 to 19     Submitted on the opposite strand 657/675
(97 %)
6 diff
(99.2 %id)
DA489757 brain .a 2077 to 2656 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
BQ716141 sympathetic trunk .a 2156 to 3038 1 to 886   tiling clone,   886/887
(99 %)
5 diff
(99.5 %id)
AA301060 testis .a 2283 to 2551 1 to 268       268/269
(99 %)
7 diff
(97.4 %id)
Z44468 brain, total brain .a 2507 to 2796 1 to 289       289/289
(100 %)
1 diff
(99.7 %id)
CF141305 CNCAP(3)T-225 cell line, Prostate .a 2507 to 3003 1 to 497       497/497
(100 %)
5 diff
(99.0 %id)
TI_154172048   .a 2514 to 3116 78 to 680       603/603
(100 %)
2 diff
(99.7 %id)
DA807163 brain .a 2559 to 3126 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
AF525416   .a 2579 to 4503 70 to 1994   tiling clone, AAA   1925/1994
(96 %)
7 diff
(99.7 %id)
DA083701 cerebellum .a 2652 to 3221 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
R99732 liver and spleen .a 2743 to 2941 1 to 200       200/200
(100 %)
3 diff
(98.5 %id)
BG202526   .a 2812 to 3525 1 to 714       714/788
(90 %)
43 diff
(94.6 %id)
CX752823 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 2929 to 3692 1 to 760     Submitted on the opposite strand 760/764
(99 %)
7 diff
(99.1 %id)
BE155964 head_neck .a 2945 to 3392 7 to 454       448/463
(96 %)
9 diff
(98.1 %id)
AI078644 parathyroid gland, parathyroid tumor .a 2950 to 3332 383 to 4       380/383
(99 %)
0 diff
(100 %id)
BM696994 eye, lens .a 2965 to 3575 1 to 611       611/611
(100 %)
0 diff
(100 %id)
BM696468 eye, lens .a 2972 to 3442 1 to 471       471/471
(100 %)
0 diff
(100 %id)
AA134604 lung, lung carcinoma .a 3171 to 3744 1 to 573       573/573
(100 %)
2 diff
(99.7 %id)
CX760629 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 3264 to 4016 1 to 739     Submitted on the opposite strand 739/820
(90 %)
30 diff
(96.4 %id)
BC007520 Uterus, endometrium adenocarcinoma .a 3300 to 4505 1 to 1206   tiling clone, available from MGC, AAA   1206/1206
(100 %)
0 diff
(100 %id)
BE378048 endometrium, adenocarcinoma cell line, uterus .a 3319 to 4000 1 to 689   available from MGC,   689/777
(88 %)
19 diff
(97.6 %id)
BG202240   .a 3413 to 3929 53 to 570       522/838
(62 %)
24 diff
(97.2 %id)
BG198633   .a 3416 to 4187 1 to 774       773/784
(98 %)
22 diff
(97.2 %id)
BG199159   .a 3416 to 4230 1 to 805       804/812
(99 %)
49 diff
(94.0 %id)
BG208522   .a 3416 to 4128 1 to 712       711/822
(86 %)
35 diff
(95.8 %id)
BG201727   .a 3439 to 4216 1 to 773       773/779
(99 %)
43 diff
(94.5 %id)
BG213748   .a 3441 to 4169 1 to 734       734/777
(94 %)
37 diff
(95.3 %id)
EC505798 Prostate .a 3455 to 3558 104 to 1       104/104
(100 %)
0 diff
(100 %id)
BG120479 adenocarcinoma, cell line, Liver .a 3464 to 4089 1 to 625       625/625
(100 %)
1 diff
(99.9 %id)
BF541540 hypernephroma, Kidney .a 3482 to 4123 1 to 642       642/846
(75 %)
24 diff
(97.2 %id)
FN167781 breast carcinoma .a 3484 to 3559 1 to 76       76/76
(100 %)
1 diff
(98.7 %id)
AA133172 lung, lung carcinoma .a 4070 to 4504 439 to 3       437/439
(99 %)
0 diff
(100 %id)
R99908 liver and spleen .a 4097 to 4505 412 to 3       410/413
(99 %)
0 diff
(100 %id)
BM668024 eye, lens .a 4142 to 4503 380 to 19   AAA   362/362
(100 %)
0 diff
(100 %id)
Z41690 brain, total brain .a 4200 to 4503 304 to 1       304/304
(100 %)
0 diff
(100 %id)
AY074490   .b 1 to 4333 1 to 4333 exact tiling clone, AAA   4333/4333
(100 %)
4 diff
(100.0 %id)
NM_023925.3   .b 1 to 4335 1 to 4335 exact RefSeq, AAA   4335/4335
(100 %)
0 diff
(100 %id)
DA264414 caudate nucleus .b 2477 to 2957 2 to 484   capped   483/483
(100 %)
6 diff
(98.8 %id)
BC117672 PCR rescued clones .c 1 to 3535 1 to 3535 exact tiling clone,   3535/3535
(100 %)
1 diff
(100.0 %id)
BC117673 PCR rescued clones .d 1 to 3370 1 to 3370 exact tiling clone,   3370/3370
(100 %)
2 diff
(100.0 %id)
BX538080 human cerebellum .d 2739 to 4157 2 to 1420   tiling clone, available from DKFZ, AAA   1419/1420
(99 %)
2 diff
(99.9 %id)
DB636353 testis .e 1 to 699 1 to 697   tiling clone,   697/697
(100 %)
6 diff
(99.2 %id)
AL834212 melanoma (MeWo cell line) .e 661 to 3674 1 to 3014   tiling clone, available from DKFZ, AAA   3014/3014
(100 %)
4 diff
(99.9 %id)
BG205370   .e 2540 to 3200 1 to 664       663/831
(79 %)
36 diff
(95.7 %id)
BG190515   .e 2546 to 3173 1 to 626       626/755
(82 %)
36 diff
(95.3 %id)
CF455606 peripheral nervous system .e 2624 to 3349 1 to 725       725/725
(100 %)
1 diff
(99.9 %id)
DB504511 hypothalamus .f 1 to 481 1 to 481   tiling clone,   481/481
(100 %)
1 diff
(99.8 %id)
DB505172 hypothalamus .f 1 to 457 1 to 457       457/457
(100 %)
1 diff
(99.8 %id)
TI_44170044   .f 7 to 597 75 to 665       591/665
(88 %)
9 diff
(98.7 %id)
BI551292 brain, hippocampus .f 12 to 597 1 to 587       587/587
(100 %)
7 diff
(98.9 %id)
CN399885 embryonic stem cells, cell lines H1, H7, andH9 .f 60 to 619 1 to 560   tiling clone,   560/560
(100 %)
2 diff
(99.7 %id)
BC025420 Eye, retinoblastoma .f 426 to 3645 1 to 3220 P442H R443E E445N Q446K E447K ... tiling clone, available from MGC, AAA   3220/3220
(100 %)
2 diff
(100.0 %id)
AY074491   .g 1 to 4397 1 to 4397 M186V tiling clone, AAA   4397/4397
(100 %)
1 diff
(100.0 %id)
NM_032156.2   .g 1 to 4399 1 to 4399 exact RefSeq, AAA   4399/4399
(100 %)
0 diff
(100 %id)
AK021453 whole embryo, mainly head .g 1151 to 2995 1 to 1845   available from FLJ,   1845/1845
(100 %)
3 diff
(99.9 %id)
AU117060 whole embryo, mainly head .g 1152 to 1958 2 to 809   capped   808/809
(99 %)
6 diff
(99.3 %id)
BG473545 eye, retinoblastoma .g 1180 to 1743 1 to 565   available from MGC,   565/565
(100 %)
8 diff
(98.6 %id)
BE734486 choriocarcinoma, placenta .g 1202 to 1974 1 to 764       764/984
(77 %)
18 diff
(98.2 %id)
BM045996 carcinoma, cell line, Prostate .g 1218 to 2160 1 to 953       953/980
(97 %)
49 diff
(95.0 %id)
BQ945549 carcinoma, cell line, Prostate .g 1220 to 2060 1 to 842       842/843
(99 %)
5 diff
(99.5 %id)
BU543796 carcinoma, cell line, Prostate .g 1220 to 2099 1 to 881       881/888
(99 %)
8 diff
(99.1 %id)
BQ103848 colorectal carcinoma .g 1231 to 2387 5 to 1161   tiling clone,   1157/1161
(99 %)
7 diff
(99.4 %id)
DR002314 fetal brain .g 1281 to 1898 1 to 618       618/618
(100 %)
1 diff
(99.9 %id)
CN399890 embryonic stem cells, cell lines H1, H7, andH9 .g 1381 to 2124 1 to 744       744/744
(100 %)
4 diff
(99.5 %id)
DB223673 trachea .g 1439 to 2007 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DB064185 testis .g 1493 to 2037 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA302832 hippocampus .g 1521 to 2079 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
AU143985 whole embryo, mainly head .g 2462 to 2995 533 to 1       533/581
(91 %)
9 diff
(98.5 %id)
BI824920 pooled brain, lung, testis .g 2527 to 3416 14 to 900       887/939
(94 %)
24 diff
(97.5 %id)
TI_57196028   .g 2527 to 3416 14 to 900       887/939
(94 %)
24 diff
(97.5 %id)
W42892 senescent fibroblast .g 2879 to 3279 1 to 401       401/402
(99 %)
1 diff
(99.8 %id)
CX759384 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .g 2885 to 3607 1 to 723     Submitted on the opposite strand 723/723
(100 %)
1 diff
(99.9 %id)
R55924 whole brain .g 2891 to 3257 1 to 378       378/450
(84 %)
20 diff
(95.6 %id)
BF727469 eye, lens .g 2952 to 3639 1 to 689       689/689
(100 %)
3 diff
(99.6 %id)
T75572 liver and spleen .g 3118 to 3484 1 to 371       371/430
(86 %)
7 diff
(98.4 %id)
R55714 whole brain .g 3978 to 4397 459 to 17   AAA   443/454
(97 %)
32 diff
(93.0 %id)
W42777 senescent fibroblast .g 4003 to 4397 396 to 1       396/396
(100 %)
1 diff
(99.8 %id)
AL536436 brain, fetal brain .h 1 to 882 1 to 882   tiling clone,   882/882
(100 %)
1 diff
(99.9 %id)
BX409757 brain, fetal brain .h 771 to 1661 1 to 886   tiling clone,   886/886
(100 %)
18 diff
(98.0 %id)
BX409758 brain, fetal brain .h 772 to 1697 1 to 922   tiling clone,   922/922
(100 %)
10 diff
(99.0 %id)
DA539763 Kidney .i 1 to 570 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
AB058776 brain .i 547 to 5003 1 to 3970   tiling clone, available from KIAA,   2791/3970
(70 %)
12 diff
(99.7 %id)
BM706352 eye, lens .i 3634 to 4157 1 to 524   tiling clone,   524/524
(100 %)
1 diff
(99.9 %id)
BX537569 human cervix .j 1 to 6539 1 to 6541 T9H Q10N L11Y S12R K13R ... tiling clone, available from DKFZ,   6541/6546
(99 %)
18 diff
(99.8 %id)
DA104262 cerebellum .j 2382 to 2935 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
BF918907 nervous_tumor .j 2474 to 2949 36 to 511       476/511
(93 %)
17 diff
(96.7 %id)
BF918923 nervous_tumor .j 2522 to 2968 96 to 539       444/539
(82 %)
6 diff
(98.9 %id)
CV384234 nervous_tumor .j 2554 to 3101 560 to 12     Submitted on the opposite strand 549/560
(98 %)
0 diff
(100 %id)
BF918902 nervous_tumor .j 2555 to 3070 527 to 3     Submitted on the opposite strand 525/527
(99 %)
0 diff
(100 %id)
BF918891 nervous_tumor .j 2559 to 3086 532 to 4     Submitted on the opposite strand 529/532
(99 %)
0 diff
(100 %id)
BF918901 nervous_tumor .j 2561 to 3101 551 to 15     Submitted on the opposite strand 537/551
(97 %)
0 diff
(100 %id)
BF918884 nervous_tumor .j 2562 to 3086 525 to 1     Submitted on the opposite strand 525/525
(100 %)
16 diff
(97.0 %id)
BF918922 nervous_tumor .j 2563 to 3094 541 to 13     Submitted on the opposite strand 529/541
(97 %)
0 diff
(100 %id)
BF918920 nervous_tumor .j 2566 to 3096 558 to 32     Submitted on the opposite strand 527/558
(94 %)
0 diff
(100 %id)
BF918919 nervous_tumor .j 2581 to 3094 527 to 17     Submitted on the opposite strand 511/527
(96 %)
0 diff
(100 %id)
DA226098 brain .j 2721 to 3221 2 to 503   capped   502/502
(100 %)
1 diff
(99.9 %id)
BF918874 nervous_tumor .j 2901 to 3121 12 to 229       218/241
(90 %)
7 diff
(97.1 %id)
BF918924 nervous_tumor .j 2906 to 3097 225 to 35     Submitted on the opposite strand 191/225
(84 %)
0 diff
(100 %id)
BX478941   .j 2935 to 3600 1 to 666       666/666
(100 %)
0 diff
(100 %id)
BF918906 nervous_tumor .j 2967 to 3121 164 to 11     Submitted on the opposite strand 154/164
(93 %)
0 diff
(100 %id)
AU129519   .j 3045 to 3654 2 to 612   capped   611/611
(100 %)
4 diff
(99.4 %id)
BE675413 B-cell, chronic lymphotic leukemia .j 3296 to 3726 431 to 1       431/431
(100 %)
1 diff
(99.8 %id)
AA864516 pooled germ cell tumors .j 3359 to 3725 367 to 1       367/367
(100 %)
0 diff
(100 %id)
DB169046 kidney, tumor tissue .j 3633 to 4209 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA236298 brain .j 3825 to 4401 2 to 578   tiling clone, capped   577/577
(100 %)
4 diff
(99.4 %id)
DA174413 amygdala .j 3854 to 4438 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
AA313305 colon .j 3984 to 4363 1 to 379       379/379
(100 %)
2 diff
(99.5 %id)
DB249986 uterus .j 4040 to 4599 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
AA403070   .j 4127 to 4517 1 to 391       391/391
(100 %)
0 diff
(100 %id)
AW893211 nervous_normal .j 4146 to 4449 304 to 1       304/304
(100 %)
3 diff
(99.1 %id)
DA148721 amygdala .j 4239 to 4807 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
AA361460   .j 4290 to 4527 1 to 238       238/238
(100 %)
1 diff
(99.6 %id)
BF802605 colon_ins .j 4386 to 4753 380 to 14   tiling clone, Submitted on the opposite strand 367/391
(93 %)
0 diff
(100 %id)
DA025999   .j 4397 to 4955 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA763176 tongue .j 4621 to 5195 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DB251503 uterus .j 4632 to 5140 2 to 510   capped   509/509
(100 %)
1 diff
(99.9 %id)
AL602648 human skeletal muscle .j 4661 to 5287 1 to 627       627/627
(100 %)
1 diff
(99.9 %id)
CN274698 embryonic stem cells, DMSO-treated H9 cellline .j 4683 to 5130 12 to 459   tiling clone,   448/459
(97 %)
6 diff
(98.7 %id)
DA769050 brain .j 4721 to 5251 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
BX433089 brain, fetal brain .j 4855 to 5706 850 to 1       850/878
(96 %)
23 diff
(97.4 %id)
BQ067970 brain .j 4862 to 5570 10 to 719   tiling clone,   710/1094
(64 %)
16 diff
(98.6 %id)
R17450 whole brain .j 4959 to 5456 1 to 503       503/508
(99 %)
15 diff
(97.1 %id)
F08259 brain, total brain .j 4960 to 5169 1 to 210       210/210
(100 %)
0 diff
(100 %id)
T23044   .j 4960 to 5169 1 to 210       210/210
(100 %)
0 diff
(100 %id)
R19259 whole brain .j 4961 to 5368 1 to 416       416/432
(96 %)
11 diff
(97.5 %id)
BX433090 brain, fetal brain .j 5107 to 5720 612 to 1       612/879
(69 %)
37 diff
(95.8 %id)
DT219915 brain .j 5123 to 5436 1 to 314       314/314
(100 %)
9 diff
(97.2 %id)
AA083163   .j 5149 to 5558 1 to 412   tiling clone,   412/413
(99 %)
3 diff
(99.3 %id)
T97891 liver and spleen .j 5232 to 5512 14 to 295       282/325
(86 %)
8 diff
(97.6 %id)
BC111007 Brain, fetal, whole pooled .j 5251 to 6537 1 to 1287   tiling clone, AAA   1287/1287
(100 %)
1 diff
(100.0 %id)
BM928143 brain .j 5252 to 6293 1 to 1059       1059/1069
(99 %)
37 diff
(96.6 %id)
BG705003 brain, hippocampus .j 5298 to 6040 1 to 739   available from MGC,   739/739
(100 %)
8 diff
(99.0 %id)
BC066295 Brain, hippocampus .j 5303 to 6537 1 to 1235   available from MGC, AAA   1235/1235
(100 %)
2 diff
(99.9 %id)
AA362636 ovary .j 5360 to 5651 9 to 301       293/301
(97 %)
7 diff
(97.7 %id)
BG188346   .j 5406 to 6156 1 to 752       751/818
(91 %)
49 diff
(94.1 %id)
BG219546   .j 5406 to 6228 1 to 823       822/824
(99 %)
23 diff
(97.3 %id)
BG193582   .j 5408 to 6069 44 to 708       668/830
(80 %)
34 diff
(96.0 %id)
BG199682   .j 5408 to 6116 45 to 761       718/847
(84 %)
71 diff
(91.7 %id)
R48102 breast .j 5536 to 5895 1 to 369       369/491
(75 %)
16 diff
(96.8 %id)
BM693772 eye, lens .j 5541 to 6081 1 to 541   fully sequenced,   541/541
(100 %)
0 diff
(100 %id)
AA497072   .j 5559 to 5816 1 to 258       258/258
(100 %)
0 diff
(100 %id)
AA404349   .j 6022 to 6537 531 to 16   AAA   516/516
(100 %)
0 diff
(100 %id)
AU151624   .j 6048 to 6537 491 to 1       491/500
(98 %)
2 diff
(99.6 %id)
BU738211 eye, lens .j 6051 to 6537 505 to 19   fully sequenced, AAA   487/487
(100 %)
0 diff
(100 %id)
R42797 whole brain .j 6146 to 6518 407 to 28   AAA   380/400
(95 %)
0 diff
(100 %id)
AA083067   .j 6160 to 6510 357 to 1       357/376
(94 %)
10 diff
(97.4 %id)
AA496910   .j 6167 to 6538 372 to 1       372/372
(100 %)
0 diff
(100 %id)
R44523 whole brain .j 6185 to 6538 369 to 8       362/370
(97 %)
0 diff
(100 %id)
T97892 liver and spleen .j 6220 to 6537 325 to 4       322/412
(78 %)
0 diff
(100 %id)
R47988 breast .j 6231 to 6537 312 to 1       312/314
(99 %)
6 diff
(98.1 %id)
F04485 brain, total brain .j 6323 to 6537 215 to 1       215/215
(100 %)
0 diff
(100 %id)
AI092672 heart .k 1 to 350 367 to -7   tiling clone,   367/367
(100 %)
6 diff
(98.4 %id)
R34642 whole brain .k 12 to 361 1 to 359   tiling clone,   359/365
(98 %)
17 diff
(95.4 %id)
R14267 whole brain .k 13 to 405 1 to 407       405/447
(90 %)
23 diff
(94.9 %id)
AA187575   .k 168 to 715 1 to 544   tiling clone,   546/546
(100 %)
7 diff
(98.8 %id)
AA181946   .k 1313 to 1772 463 to 1   tiling clone,   463/465
(99 %)
3 diff
(99.4 %id)
R40560 whole brain .k 1410 to 1800 414 to 8   tiling clone,   407/418
(97 %)
0 diff
(100 %id)
R49171 whole brain .k 1561 to 1800 250 to 8       243/250
(97 %)
0 diff
(100 %id)
AK024247   .l 1 to 3449 2 to 3449 P194Q V195* tiling clone, available from FLJ,   3449/3449
(100 %)
4 diff
(99.9 %id)
AK026222 human small intestine .l 2151 to 3449 1 to 1299 exact tiling clone, available from FLJ, AAA   1299/1299
(100 %)
0 diff
(100 %id)
AI110863 Liver .m 1 to 684 684 to 1       684/684
(100 %)
0 diff
(100 %id)
AF075362 Liver .m 1 to 684 684 to 1   tiling clone,   684/684
(100 %)
0 diff
(100 %id)
AI110861 Liver .m 5 to 684 681 to 1       681/681
(100 %)
2 diff
(99.8 %id)
AF075360 Liver .m 5 to 684 681 to 1       681/681
(100 %)
2 diff
(99.8 %id)
DA217930 brain .m 151 to 703 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
AF326778   .m 679 to 1775 1 to 1098 exact tiling clone,   1098/1098
(100 %)
4 diff
(99.7 %id)
BF943622 nervous_normal .m 1459 to 1986 12 to 539   tiling clone,   528/539
(97 %)
6 diff
(98.9 %id)
BI769244 pooled lung and spleen .n 1 to 740 70 to 810 P165A G231A R232A L233I I234T ... tiling clone,   741/829
(89 %)
13 diff
(98.5 %id)
TI_57183260   .n 1 to 740 103 to 843 P165A G231A R232A L233I I234T ...     741/862
(85 %)
13 diff
(98.5 %id)
CF142048 CNCAP(3)T-225 cell line, Prostate .n 129 to 675 8 to 554   tiling clone,   547/554
(98 %)
7 diff
(98.8 %id)
TI_154172933   .n 129 to 743 97 to 709   tiling clone,   613/862
(71 %)
8 diff
(99.1 %id)
CN390863 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .o 1 to 552 1 to 552   tiling clone,   552/552
(100 %)
1 diff
(99.9 %id)
DA043308 bladder .o 508 to 1061 2 to 557   tiling clone, capped   556/556
(100 %)
2 diff
(99.7 %id)
BY798927 eye .o 929 to 1435 1 to 506   tiling clone,   506/506
(100 %)
2 diff
(99.7 %id)
BM828158 Ascites, stomach .o 1010 to 1547 1 to 538   tiling clone,   538/538
(100 %)
1 diff
(99.9 %id)
BG250521 adenocarcinoma, cell line, Liver .p 1 to 805 1 to 800 F211Y W216S K217G T218R tiling clone,   800/876
(91 %)
14 diff
(98.5 %id)
DB078196 testis .q 1 to 568 2 to 569   tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
CD722447 eye, lacrimal gland .q 259 to 880 1 to 622   tiling clone,   622/622
(100 %)
0 diff
(100 %id)
BG944982 blood .q 361 to 844 514 to 31   AAA   484/484
(100 %)
1 diff
(99.8 %id)
BM049597 carcinoma, cell line, Prostate .q 446 to 944 12 to 506   tiling clone,   500/516
(96 %)
13 diff
(97.5 %id)
BG941376 blood .q 682 to 893 1 to 212   tiling clone, AAA   212/212
(100 %)
1 diff
(99.6 %id)
BE155973 head_neck .r 1 to 561 1 to 559 L2V T4I T5P D6I Q7R ... tiling clone,   559/561
(99 %)
15 diff
(97.4 %id)
CR978447 T-Lymphocytes .s 1 to 813 1 to 815 exact tiling clone,   815/815
(100 %)
2 diff
(99.8 %id)
BQ884332 sciatic nerve .t 1 to 642 1 to 648 H108P G116R I132L R142K E144G ... tiling clone,   648/966
(67 %)
26 diff
(97.4 %id)
CN399888 embryonic stem cells, cell lines H1, H7, andH9 .u 1 to 649 13 to 661 K118R tiling clone,   649/661
(98 %)
7 diff
(99.0 %id)
DA920333 small intestine .va-u 1 to 582 2 to 583   tiling clone, to resequence, capped   582/582
(100 %)
0 diff
(100 %id)
CN390862 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .va-u 991 to 1671 1 to 682   tiling clone,   682/682
(100 %)
1 diff
(99.9 %id)
AL566335 brain, fetal brain .va-u 1135 to 2070 938 to 1 E59X G74X T75H Y76L V77R ...     938/938
(100 %)
21 diff
(97.8 %id)
BU658686 blood .va-u 1173 to 1745 11 to 583 exact     573/583
(98 %)
6 diff
(99.0 %id)
AA625142 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .va-u 1175 to 1641 1 to 466       466/466
(100 %)
2 diff
(99.6 %id)
AW377397 colon .va-u 1179 to 1642 464 to 1       464/464
(100 %)
1 diff
(99.8 %id)
AA258076 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .va-u 1231 to 1578 8 to 354       347/354
(98 %)
11 diff
(96.9 %id)
BM696816 eye, lens .va-u 1246 to 1827 1 to 582 A34P     582/582
(100 %)
2 diff
(99.7 %id)
AX795402   .va-u 1266 to 1743 60 to 537 exact     478/537
(89 %)
6 diff
(98.9 %id)
AX795398   .va-u 1267 to 1743 1 to 477 exact     477/477
(100 %)
0 diff
(100 %id)
AX795400   .va-u 1270 to 1743 1 to 474       474/474
(100 %)
0 diff
(100 %id)
AX795404   .va-u 1270 to 1743 61 to 534       474/534
(88 %)
6 diff
(98.9 %id)
BM706099 eye, lens .va-u 1277 to 1770 1 to 494       494/494
(100 %)
0 diff
(100 %id)
AX795406   .va-u 1312 to 1743 61 to 492       432/492
(87 %)
6 diff
(98.8 %id)
BG204194   .va-u 1317 to 2084 812 to 38     Submitted on the opposite strand 775/892
(86 %)
0 diff
(100 %id)
BF149104 skin .va-u 1320 to 1751 1 to 432       432/432
(100 %)
1 diff
(99.8 %id)
BP421266 small intestine .va-u 1322 to 1833 1 to 512     Submitted on the opposite strand 512/512
(100 %)
0 diff
(100 %id)
AX795408   .va-u 1329 to 1743 57 to 471       415/471
(88 %)
10 diff
(97.9 %id)
AW022120 cochlea, ear .va-u 1335 to 1844 1 to 510       510/510
(100 %)
4 diff
(99.3 %id)
BG194839   .va-u 1342 to 2080 770 to 40     Submitted on the opposite strand 731/883
(82 %)
0 diff
(100 %id)
AX795410   .va-u 1351 to 1743 61 to 453       393/453
(86 %)
6 diff
(98.7 %id)
BG208345   .va-u 1356 to 2084 763 to 37     Submitted on the opposite strand 727/872
(83 %)
0 diff
(100 %id)
TI_154123791   .va-u 1384 to 2091 787 to 88   AAA   700/953
(73 %)
18 diff
(98.2 %id)
BQ009544 Chondrosarcoma, Left Pubic Bone .va-u 1390 to 2091 719 to 19   AAA   701/701
(100 %)
1 diff
(99.9 %id)
CA424527 cell lines, Chondrosarcoma .va-u 1390 to 2091 720 to 19   AAA   702/702
(100 %)
0 diff
(100 %id)
DB515815 testis .va-u 1400 to 2092 1 to 693     Submitted on the opposite strand 693/697
(99 %)
5 diff
(99.3 %id)
BI596522 brain, hypothalamus .va-u 1404 to 2078 1 to 675       675/675
(100 %)
3 diff
(99.6 %id)
BQ007954 Chondrosarcoma, Left Pelvis .va-u 1406 to 2091 703 to 19   AAA   685/685
(100 %)
1 diff
(99.9 %id)
CB528512 Aveolar Macrophage, lung .va-u 1406 to 2091 703 to 19   AAA   685/685
(100 %)
2 diff
(99.8 %id)
TI_45209381   .va-u 1409 to 2078 134 to 803       670/803
(83 %)
6 diff
(99.3 %id)
CA440023 lung, Metastatic Chondrosarcoma .va-u 1419 to 2091 691 to 19   AAA   673/673
(100 %)
0 diff
(100 %id)
BQ010043 Chondrosarcoma, Left Pubic Bone .va-u 1430 to 2093 680 to 17   tiling clone, AAA   664/664
(100 %)
0 diff
(100 %id)
AW057920 fibrotheoma, ovary .va-u 1442 to 2091 648 to 1       648/650
(99 %)
18 diff
(97.3 %id)
AI417523 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .va-u 1447 to 2092 653 to 6       648/653
(99 %)
0 diff
(100 %id)
C01933   .va-u 1450 to 1799 1 to 359       359/362
(99 %)
15 diff
(95.9 %id)
AW057748 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .va-u 1462 to 2091 630 to 1       630/630
(100 %)
5 diff
(99.3 %id)
CA311991 Human Lung Epithelial cells, lung .va-u 1464 to 2093 646 to 17   AAA   630/630
(100 %)
1 diff
(99.9 %id)
AI749321 aorta .va-u 1468 to 2091 625 to 1       625/625
(100 %)
3 diff
(99.6 %id)
AW043700 pooled .va-u 1472 to 2092 624 to 3       622/624
(99 %)
0 diff
(100 %id)
AW305168 brain, three pooled meningiomas .va-u 1483 to 2091 609 to 1       609/609
(100 %)
11 diff
(98.2 %id)
BM504968 Pancreas, Purified pancreatic islet .va-u 1486 to 1982 1 to 497       497/497
(100 %)
0 diff
(100 %id)
AA608713 lung, lung carcinoma .va-u 1492 to 2064 573 to 1       573/573
(100 %)
1 diff
(99.9 %id)
CK904972 Pancreas, Purified pancreatic islet .va-u 1492 to 2091 615 to 16   AAA Submitted on the opposite strand 600/600
(100 %)
1 diff
(99.9 %id)
CK904971 Pancreas, Purified pancreatic islet .va-u 1505 to 2008 1 to 504     Submitted on the opposite strand 504/504
(100 %)
0 diff
(100 %id)
T61538 ovary .va-u 1521 to 1598 1 to 78       78/78
(100 %)
0 diff
(100 %id)
DB331898 small intestine .va-u 1533 to 2093 561 to 1   to resequence,   561/561
(100 %)
1 diff
(99.9 %id)
BM504643 Pancreas, Purified pancreatic islet .va-u 1543 to 2092 554 to 6       549/554
(99 %)
0 diff
(100 %id)
AW474850 lymph node, lymphoma, follicular mixed small and largecell .va-u 1543 to 2091 550 to 1       550/550
(100 %)
2 diff
(99.7 %id)
BF594226 brain, glioblastoma (pooled) .va-u 1543 to 2091 549 to 1       549/549
(100 %)
1 diff
(99.9 %id)
AA629969 lung, lung carcinoma .va-u 1551 to 2064 512 to 1       512/512
(100 %)
2 diff
(99.7 %id)
AA579971 colon .va-u 1595 to 2092 498 to 1       498/501
(99 %)
0 diff
(100 %id)
AI127940 uterus .va-u 1596 to 2091 494 to 1       494/494
(100 %)
2 diff
(99.6 %id)
BX092076 whole brain .va-u 1599 to 2091 507 to 15   AAA   493/493
(100 %)
0 diff
(100 %id)
CA415727 Chondrosarcoma Cell line .va-u 1615 to 2091 496 to 19   AAA   478/478
(100 %)
1 diff
(99.8 %id)
AA705289 liver and spleen .va-u 1620 to 2092 474 to 2       473/474
(99 %)
0 diff
(100 %id)
AW005378 colon .va-u 1642 to 2091 467 to 18   AAA   450/450
(100 %)
0 diff
(100 %id)
AI610162 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .va-u 1645 to 2091 458 to 12   AAA   447/447
(100 %)
1 diff
(99.8 %id)
AA835810 brain, substantia nigra .va-u 1647 to 2092 446 to 1       446/446
(100 %)
0 diff
(100 %id)
AI689091 serous papillary carcinoma, high grade, 2pooled tumors, uterus .va-u 1649 to 2091 453 to 11   AAA   443/443
(100 %)
0 diff
(100 %id)
N95366 lung .va-u 1651 to 2091 448 to 18   AAA   431/452
(95 %)
14 diff
(97.0 %id)
R56253 whole brain .va-u 1653 to 2091 464 to 17   AAA   448/451
(99 %)
15 diff
(96.7 %id)
AI084438 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .va-u 1661 to 2092 437 to 6       432/437
(98 %)
0 diff
(100 %id)
AA887126 pooled germ cell tumors .va-u 1662 to 2091 442 to 13   AAA   430/430
(100 %)
0 diff
(100 %id)
AA707300   .va-u 1667 to 2075 409 to 1     Submitted on the opposite strand 409/409
(100 %)
5 diff
(98.8 %id)
AA766559 germinal center B cell .va-u 1672 to 2035 433 to 68   AAA   366/406
(90 %)
0 diff
(100 %id)
BX282493 brain, hippocampus .va-u 1674 to 2091 446 to 29   AAA Submitted on the opposite strand 418/418
(100 %)
0 diff
(100 %id)
AI378772 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .va-u 1680 to 2092 414 to 2       413/414
(99 %)
0 diff
(100 %id)
AW450806   .va-u 1682 to 2091 427 to 18   AAA   410/410
(100 %)
1 diff
(99.8 %id)
AI269303 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .va-u 1684 to 2092 414 to 6       409/414
(98 %)
0 diff
(100 %id)
AA470804 colon .va-u 1688 to 2097 410 to 1   tiling clone,   410/410
(100 %)
0 diff
(100 %id)
AA725191 parathyroid gland, parathyroid tumor .va-u 1694 to 2092 404 to 6       399/404
(98 %)
0 diff
(100 %id)
AA903168 leiomyosarcoma, soft tissue .va-u 1697 to 2030 334 to 1       334/334
(100 %)
0 diff
(100 %id)
AI540847 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .va-u 1718 to 2091 374 to 1       374/374
(100 %)
0 diff
(100 %id)
AA256605 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .va-u 1721 to 2092 372 to 1       372/372
(100 %)
1 diff
(99.8 %id)
AI536732 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .va-u 1730 to 2093 364 to 1       364/364
(100 %)
1 diff
(99.8 %id)
AI359641 brain, glioblastoma (pooled) .va-u 1742 to 2091 350 to 1       350/350
(100 %)
1 diff
(99.8 %id)
BF062307 pooled germ cell tumors .va-u 1754 to 2091 349 to 12   AAA   338/338
(100 %)
0 diff
(100 %id)
AW021074 cochlea, ear .va-u 1759 to 2091 1 to 333   fully sequenced, AAA   333/333
(100 %)
4 diff
(98.8 %id)
AA694404 liver and spleen .va-u 1760 to 2092 336 to 4       333/336
(99 %)
0 diff
(100 %id)
FN106821 breast carcinoma .va-u 1763 to 1870 1 to 103       103/112
(91 %)
13 diff
(88.4 %id)
AI537144 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .va-u 1765 to 2091 327 to 1       327/327
(100 %)
1 diff
(99.7 %id)
BF589574 Prostate .va-u 1767 to 2091 341 to 17   AAA   325/325
(100 %)
0 diff
(100 %id)
AW191603 Pancreas, pancreatic islets .va-u 1770 to 2092 1 to 326   AAA   326/326
(100 %)
4 diff
(98.8 %id)
AI264091 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .va-u 1770 to 2092 323 to 1       323/323
(100 %)
0 diff
(100 %id)
AA683171   .va-u 1772 to 2091 346 to 27   AAA   320/320
(100 %)
0 diff
(100 %id)
BG182469   .va-u 1786 to 2084 334 to 36     Submitted on the opposite strand 299/334
(89 %)
0 diff
(100 %id)
AW301165 Kidney .va-u 1795 to 2092 299 to 2       298/299
(99 %)
0 diff
(100 %id)
N66512 cochlea, ear .va-u 1803 to 2091 289 to 1       289/289
(100 %)
0 diff
(100 %id)
BI492025 cochlea, ear .va-u 1804 to 2096 293 to 1   fully sequenced,   293/293
(100 %)
4 diff
(98.7 %id)
AI270253 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .va-u 1817 to 2091 275 to 1       275/275
(100 %)
1 diff
(99.7 %id)
AW473992 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .va-u 1829 to 2091 263 to 1       263/263
(100 %)
0 diff
(100 %id)
T23045   .va-u 1877 to 2091 1 to 215     Submitted on the opposite strand 215/215
(100 %)
0 diff
(100 %id)
AW889340 nervous_tumor .va-u 1882 to 2081 9 to 208       200/216
(92 %)
4 diff
(98.2 %id)
AA775162 lung .va-u 1897 to 2064 168 to 1       168/168
(100 %)
0 diff
(100 %id)
BU735396 eye, lens .va-u 1905 to 2091 205 to 19   AAA   187/187
(100 %)
1 diff
(99.5 %id)
FN094945 breast carcinoma .va-u 1910 to 1998 91 to 1     Submitted on the opposite strand 91/96
(94 %)
2 diff
(98.0 %id)
BE243585 leukopheresis .va-u 1933 to 2091 160 to 1       160/160
(100 %)
5 diff
(96.9 %id)
AI967943 pooled germ cell tumors .va-u 1992 to 2091 112 to 13   AAA   100/100
(100 %)
0 diff
(100 %id)
BE552256 pooled germ cell tumors .va-u 1992 to 2091 112 to 13   AAA   100/100
(100 %)
0 diff
(100 %id)
AA258647 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .va-u 2009 to 2091 83 to 1       83/83
(100 %)
0 diff
(100 %id)
BG925155 cartilage .vb 1 to 314 86 to 399   tiling clone,   314/336
(93 %)
4 diff
(98.9 %id)
CN399887 embryonic stem cells, cell lines H1, H7, andH9 .vb 105 to 732 1 to 628 exact tiling clone,   628/628
(100 %)
0 diff
(100 %id)
T78498 liver and spleen .vc 1 to 319 1 to 333   tiling clone,   333/337
(98 %)
17 diff
(95.0 %id)
T78435 liver and spleen .vc 913 to 1376 472 to 2   tiling clone,   471/474
(99 %)
0 diff
(100 %id)
CN283799 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .vd 1 to 593 1 to 593   tiling clone,   593/593
(100 %)
3 diff
(99.5 %id)
BX470419   .vd 285 to 953 1 to 670   tiling clone,   670/670
(100 %)
5 diff
(99.3 %id)
CV314906 head_neck .vd 317 to 584 9 to 271       263/274
(95 %)
10 diff
(96.4 %id)
AA644627 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vd 568 to 949 1 to 382   tiling clone,   382/383
(99 %)
5 diff
(98.7 %id)
BY798894 eye .vd 799 to 1256 119 to 576   tiling clone,   458/576
(79 %)
9 diff
(98.5 %id)
AA354837   .vd 1047 to 1372 1 to 326       326/326
(100 %)
3 diff
(99.1 %id)
BM696870 eye, lens .vd 1076 to 1606 1 to 531   tiling clone, fully sequenced,   531/531
(100 %)
3 diff
(99.5 %id)
BU735456 eye, lens .vd 1576 to 2015 458 to 19   tiling clone, fully sequenced, AAA   440/440
(100 %)
1 diff
(99.8 %id)
BF572706 melanotic melanoma, high MDR, skin .ve-u 341 to 951 1 to 614 F14L V15C L16A W24V H25A ... tiling clone, AAA   614/614
(100 %)
23 diff
(96.3 %id)
BE244211 leukopheresis .ve-u 350 to 751 1 to 401       401/401
(100 %)
5 diff
(98.8 %id)
BE244237 leukopheresis .ve-u 350 to 783 1 to 433   tiling clone,   433/433
(100 %)
4 diff
(99.1 %id)
DB262531 uterus .ve-u 355 to 926 2 to 574 exact tiling clone, capped   573/573
(100 %)
1 diff
(99.9 %id)
DB575753 hypothalamus .ve-u 715 to 1201 1 to 487     Submitted on the opposite strand 487/488
(99 %)
2 diff
(99.6 %id)
DB576440 hypothalamus .ve-u 741 to 1201 1 to 461   tiling clone, Submitted on the opposite strand 461/462
(99 %)
2 diff
(99.6 %id)
AW044159 pooled .ve-u 755 to 1205 455 to 5   tiling clone,   451/455
(99 %)
0 diff
(100 %id)
DA507332 brain .vf 1 to 274 2 to 275   tiling clone, capped   274/274
(100 %)
0 diff
(100 %id)
DA407161 thalamus .vf 99 to 567 2 to 470   capped   469/469
(100 %)
0 diff
(100 %id)
DB316153 brain .vf 264 to 795 532 to 1   tiling clone,   532/532
(100 %)
1 diff
(99.9 %id)
DA263051 caudate nucleus .vg 1 to 578 2 to 579 exact tiling clone, capped   578/578
(100 %)
1 diff
(99.9 %id)
DA757895   .vh 1 to 510 2 to 511   tiling clone, capped   510/510
(100 %)
0 diff
(100 %id)
DA228203 brain .vi 1 to 477 2 to 479   tiling clone, capped   478/478
(100 %)
1 diff
(99.8 %id)
BF918873 nervous_tumor Gene CAPRIN2, variant not shown         This clone was ignored    
BF918877 nervous_tumor Gene CAPRIN2, variant not shown         This clone was ignored    
BF918883 nervous_tumor Gene CAPRIN2, variant not shown         This clone was ignored    
BF918896 nervous_tumor Gene CAPRIN2, variant not shown         This clone was ignored    
BF918897 nervous_tumor Gene CAPRIN2, variant not shown         Submitted on the opposite strand    
BF918913 nervous_tumor Gene CAPRIN2, variant not shown         This clone was ignored    
BF918915 nervous_tumor Gene CAPRIN2, variant not shown         This clone was ignored    
BF918917 nervous_tumor Gene CAPRIN2, variant not shown         This clone was ignored    
BF918918 nervous_tumor Gene CAPRIN2, variant not shown         This clone was ignored    
BF918921 nervous_tumor Gene CAPRIN2, variant not shown         This clone was ignored    
DB297923 cerebellum Gene CAPRIN2, variant not shown              
DA080988 cerebellum Gene CAPRIN2, variant not shown       capped      
H48755 liver and spleen Gene CAPRIN2, variant not shown              
H48756 liver and spleen Gene CAPRIN2, variant not shown              
BG772305 testis Gene CAPRIN2, variant not shown         This clone was ignored    
CD657750 Embryonic Stem cells Gene CAPRIN2, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va-u, .vb, .vc, .vd, .ve-u, .vf, .vg, .vh, .vi Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C