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Gene C19orf20TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
46 supporting clones for gene C19orf20 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB128255 thymus .a 1 to 575 2 to 576   tiling clone, to resequence, capped   575/575
(100 %)
0 diff
(100 %id)
DB344408 thymus .a 1266 to 1792 534 to 1   tiling clone, to resequence,   534/534
(100 %)
16 diff
(97.1 %id)
AI738612 colon, colon tumor, RER+ .b 1 to 274 274 to 1   tiling clone,   274/274
(100 %)
1 diff
(99.7 %id)
NM_033513.2   .b 199 to 1311 1 to 1113   RefSeq, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 1113/1113
(100 %)
0 diff
(100 %id)
BM846833 myeloma .b 199 to 786 1 to 588       588/588
(100 %)
0 diff
(100 %id)
BM846349 myeloma .b 199 to 703 1 to 504       504/504
(100 %)
2 diff
(99.7 %id)
BG339928 leiomyosarcoma cell line, uterus .b 203 to 694 1 to 506       506/776
(65 %)
27 diff
(96.6 %id)
BM550672 amelanotic melanoma, cell line, skin .b 208 to 895 21 to 708       688/1103
(62 %)
14 diff
(98.8 %id)
BM913426 amelanotic melanoma, cell line, skin .b 208 to 632 18 to 442       425/1456
(29 %)
11 diff
(99.3 %id)
BQ933124 large cell carcinoma, lung .b 211 to 798 1 to 592       592/1052
(56 %)
34 diff
(96.8 %id)
BQ935293 brain, neuroblastoma, cell line .b 216 to 784 1 to 571       571/999
(57 %)
13 diff
(98.7 %id)
BU850105 ovary, teratocarcinoma, cell line .b 218 to 831 10 to 624       615/975
(63 %)
26 diff
(97.4 %id)
BG387274 adenocarcinoma cell line, colon .b 221 to 785 1 to 573       573/777
(73 %)
14 diff
(98.2 %id)
BG337757 leiomyosarcoma cell line, uterus .b 223 to 869 1 to 649       649/734
(88 %)
9 diff
(98.8 %id)
BF311688 brain, neuroblastoma .b 239 to 1050 1 to 815   tiling clone,   815/816
(99 %)
14 diff
(98.3 %id)
AW967441   .b 261 to 551 1 to 291       291/295
(98 %)
18 diff
(93.9 %id)
AA974105 pooled germ cell tumors .b 267 to 586 1 to 319     Submitted on the opposite strand 319/319
(100 %)
6 diff
(98.2 %id)
AW183808 pooled .b 267 to 605 1 to 339     Submitted on the opposite strand 339/339
(100 %)
0 diff
(100 %id)
AW967669   .b 307 to 629 1 to 323       323/423
(76 %)
1 diff
(99.8 %id)
BC009520 Placenta, choriocarcinoma .b 313 to 1311 1 to 999   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 999/999
(100 %)
0 diff
(100 %id)
BE410608 choriocarcinoma, placenta .b 315 to 955 1 to 639   available from MGC,   639/639
(100 %)
11 diff
(98.3 %id)
BU951639 Pancreas, Purified pancreatic islet .b 488 to 862 1 to 375       375/375
(100 %)
1 diff
(99.8 %id)
CF128273 Chondrosarcoma Lung Metastasis cell lines, lung .b 538 to 1209 1 to 673       673/673
(100 %)
11 diff
(98.4 %id)
BM264146 Pancreas, Purified pancreatic islet .b 540 to 886 1 to 347       347/347
(100 %)
4 diff
(98.9 %id)
TI_154194123   .b 541 to 1221 54 to 736       683/990
(68 %)
16 diff
(98.4 %id)
AA251271 germinal center B cell .b 550 to 749 214 to 17       198/214
(92 %)
0 diff
(100 %id)
BM053097 Islets of Langerhans, Pancreas .b 557 to 915 1 to 360       360/360
(100 %)
7 diff
(98.1 %id)
TI_154088576   .b 663 to 1255 655 to 57       599/1182
(50 %)
0 diff
(100 %id)
AI990682 pooled germ cell tumors .b 680 to 1237 558 to 1       558/558
(100 %)
0 diff
(100 %id)
AW772085 Kidney .b 724 to 1255 532 to 1       532/532
(100 %)
1 diff
(99.9 %id)
AI673255 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .b 739 to 1241 503 to 1       503/503
(100 %)
4 diff
(99.3 %id)
BF108774 pooled .b 739 to 1255 517 to 1       517/517
(100 %)
3 diff
(99.5 %id)
AI598187 anaplastic oligodendroglioma, brain .b 770 to 1255 487 to 1       487/487
(100 %)
3 diff
(99.4 %id)
AI800587 pooled .b 854 to 1212 360 to 1       360/360
(100 %)
3 diff
(99.2 %id)
AI972304 Prostate .b 862 to 1255 394 to 1       394/394
(100 %)
0 diff
(100 %id)
AW050879 colon, colonic mucosa from 3 patients with Crohn'sdisease .b 883 to 1255 373 to 1       373/373
(100 %)
0 diff
(100 %id)
AI392869 B-cell, chronic lymphotic leukemia .b 906 to 1255 349 to 1       349/349
(100 %)
1 diff
(99.8 %id)
BF476504 Prostate .b 932 to 1255 324 to 1       324/324
(100 %)
1 diff
(99.7 %id)
BM263847 Pancreas, Purified pancreatic islet .b 979 to 1190 212 to 1       212/212
(100 %)
4 diff
(98.2 %id)
AW196412 pooled germ cell tumors .b 993 to 1206 214 to 1       214/214
(100 %)
0 diff
(100 %id)
AI478144 Kidney .b 1007 to 1255 249 to 1       249/249
(100 %)
0 diff
(100 %id)
AK125401 brain .c-u 1 to 2873 1 to 2873 Q112R tiling clone, available from FLJ,   2873/2873
(100 %)
11 diff
(99.7 %id)
DA784845 brain .c-u 2 to 512 2 to 513   capped   512/512
(100 %)
3 diff
(99.5 %id)
DB339530 testis .c-u 1946 to 2224 1 to 279   tiling clone, Submitted on the opposite strand 279/279
(100 %)
2 diff
(99.3 %id)
DB326392 brain .c-u 2338 to 2873 536 to 1       536/536
(100 %)
2 diff
(99.7 %id)
AK126170 thymus Gene C19orf20, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
BE796437 lung, small cell carcinoma Gene C19orf20, variant not shown         This clone was ignored    
BG472669 eye, retinoblastoma Gene C19orf20, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C