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Gene SLMO1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
67 supporting clones for gene SLMO1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI547749 brain, hippocampus .a 1 to 553 7 to 559   tiling clone,   559/559
(100 %)
5 diff
(99.2 %id)
TI_44169108   .a 1 to 553 93 to 645       554/645
(85 %)
7 diff
(99.0 %id)
DA334403 hippocampus .a 1 to 579 2 to 582 W35V D36G T37H V38G I39H ... tiling clone, capped   581/581
(100 %)
2 diff
(99.7 %id)
NM_006553.3   .b 1 to 1714 2 to 1715 exact RefSeq, AAA   1715/1715
(100 %)
0 diff
(100 %id)
DT216958 brain .b 47 to 639 1 to 593 D37G T125A tiling clone,   593/593
(100 %)
2 diff
(99.7 %id)
AW978516   .b 210 to 796 1 to 587   tiling clone,   587/680
(86 %)
5 diff
(99.3 %id)
AA825402 germinal center B cell .b 287 to 746 1 to 456     Submitted on the opposite strand 456/456
(100 %)
6 diff
(98.7 %id)
BE910458 epithelioid carcinoma, Pancreas .b 532 to 859 1 to 328   tiling clone,   328/328
(100 %)
2 diff
(99.4 %id)
NM_001142405.1   .c 1 to 1717 2 to 1718 exact RefSeq, AAA   1718/1718
(100 %)
0 diff
(100 %id)
DB017979 esophageal, tumor tissue .c 1 to 294 2 to 295   capped   294/294
(100 %)
0 diff
(100 %id)
DB018070 esophageal, tumor tissue .c 1 to 572 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
DA684176   .c 34 to 595 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BC106750 PCR rescued clones .c 43 to 791 1 to 749 exact tiling clone,   749/749
(100 %)
0 diff
(100 %id)
DA154354 amygdala .c 55 to 628 2 to 575 exact capped   574/575
(99 %)
0 diff
(100 %id)
CB155200 brain .c 170 to 723 1 to 554       554/554
(100 %)
3 diff
(99.5 %id)
DB089812 testis .c 194 to 740 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
BQ645268 hepatocellular carcinoma, cell line, Liver .c 228 to 985 21 to 780   tiling clone,   760/967
(78 %)
24 diff
(97.6 %id)
BQ646120 hepatocellular carcinoma, cell line, Liver .c 228 to 847 1 to 617       617/892
(69 %)
8 diff
(99.2 %id)
H13388 whole brain .c 280 to 671 1 to 398       398/443
(89 %)
7 diff
(98.5 %id)
BM822541 stomach .c 551 to 822 1 to 272       272/272
(100 %)
2 diff
(99.3 %id)
BG478698 melanotic melanoma, skin .c 593 to 953 1 to 361       361/635
(56 %)
5 diff
(99.3 %id)
BC007528 Skin, melanotic melanoma. .c 594 to 1717 1 to 1124   tiling clone, available from MGC, AAA   1124/1124
(100 %)
5 diff
(99.6 %id)
BE385514 melanotic melanoma, skin .c 612 to 950 1 to 343       343/864
(39 %)
8 diff
(99.1 %id)
BE275170 melanotic melanoma, skin .c 613 to 953 1 to 341   available from MGC,   341/347
(98 %)
4 diff
(98.9 %id)
DB488046 hypothalamus .c 655 to 969 1 to 312       312/313
(99 %)
14 diff
(95.6 %id)
TI_154104021   .c 744 to 1717 1035 to 79   AAA   957/979
(97 %)
25 diff
(97.5 %id)
TI_154118175   .c 883 to 1717 915 to 90   AAA   826/932
(88 %)
13 diff
(98.7 %id)
CA446199 Chondrosarcoma, Left Pubic Bone .c 994 to 1717 740 to 17   AAA   724/724
(100 %)
0 diff
(100 %id)
AF048849 Liver .c 1065 to 1715 1 to 645   AAA   645/645
(100 %)
13 diff
(98.0 %id)
CX872140 embryonic stem .c 1089 to 1720 659 to 28     Submitted on the opposite strand 632/659
(95 %)
0 diff
(100 %id)
BM793418 stomach .c 1159 to 1718 1 to 560   tiling clone,   560/560
(100 %)
0 diff
(100 %id)
BM832867 stomach .c 1159 to 1632 1 to 474       474/474
(100 %)
0 diff
(100 %id)
BF873086 lung_tumor .c 1213 to 1461 1 to 247       247/247
(100 %)
9 diff
(96.4 %id)
BT007092   .c 1222 to 1395 1 to 174       174/174
(100 %)
1 diff
(99.5 %id)
AW071121 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .c 1222 to 1719 497 to 1       497/497
(100 %)
2 diff
(99.6 %id)
DB322840   .c 1225 to 1717 496 to 1       496/496
(100 %)
3 diff
(99.4 %id)
AW827085 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .c 1226 to 1715 499 to 12   AAA   488/490
(99 %)
3 diff
(99.4 %id)
H06052 whole brain .c 1293 to 1720 444 to 5       440/451
(97 %)
0 diff
(100 %id)
DB557504 hypothalamus .c 1310 to 1714 27 to 427     Submitted on the opposite strand 401/428
(93 %)
28 diff
(93.5 %id)
BX114288   .c 1333 to 1715 1 to 383   AAA   383/383
(100 %)
1 diff
(99.8 %id)
AA404977   .c 1333 to 1504 1 to 172   fully sequenced,   172/172
(100 %)
4 diff
(97.7 %id)
BM746533 stomach .c 1334 to 1685 1 to 352       352/352
(100 %)
1 diff
(99.8 %id)
BE504894 pooled germ cell tumors .c 1385 to 1715 350 to 20   AAA   331/331
(100 %)
0 diff
(100 %id)
AW149131 Kidney, renal cell tumor .c 1440 to 1717 279 to 1       279/279
(100 %)
1 diff
(99.7 %id)
AA412674   .c 1474 to 1715 254 to 13   fully sequenced, AAA   242/242
(100 %)
1 diff
(99.6 %id)
DA083490 cerebellum .d 1 to 487 2 to 488 exact tiling clone, capped   487/487
(100 %)
0 diff
(100 %id)
BI752100 brain .e 11 to 626 1 to 616   tiling clone,   616/616
(100 %)
1 diff
(99.9 %id)
TI_57215198   .e 11 to 626 31 to 646       616/646
(95 %)
7 diff
(99.0 %id)
BM928299 brain .e 79 to 426 113 to 461 E8X G15X D18N S31X E76K ...     446/637
(70 %)
13 diff
(98.0 %id)
BF114832 fibrotheoma, ovary .f 1 to 587 586 to 1   tiling clone,   586/586
(100 %)
2 diff
(99.7 %id)
DC336471 substantia nigra .f 90 to 662 8 to 580   tiling clone,   573/573
(100 %)
0 diff
(100 %id)
DC407954 thymus .f 340 to 885 1 to 546 exact tiling clone,   546/546
(100 %)
0 diff
(100 %id)
AL359942 brain .g 1 to 1682 15 to 1696 exact tiling clone, available from DKFZ, AAA   1682/1696
(99 %)
10 diff
(99.5 %id)
CR627465 brain .g 1 to 1682 15 to 1696 exact available from DKFZ, AAA   1682/1696
(99 %)
10 diff
(99.5 %id)
BQ441069 melanotic melanoma, skin .h 1 to 774 4 to 786 exact tiling clone,   786/908
(86 %)
20 diff
(97.8 %id)
AK056046   Gene SLMO1, variant not shown       available from FLJ, This clone was ignored    
AK303325 thymus Gene SLMO1, variant not shown         This clone was ignored    
DA348067 substantia nigra Gene SLMO1, variant not shown       capped This clone was ignored    
AI624840 pooled germ cell tumors Gene SLMO1, variant not shown         Submitted on the opposite strand    
AI625026 pooled germ cell tumors Gene SLMO1, variant not shown         Submitted on the opposite strand    
AI637984 pooled germ cell tumors Gene SLMO1, variant not shown         Submitted on the opposite strand    
AI651730 pooled germ cell tumors Gene SLMO1, variant not shown         Submitted on the opposite strand    
AW237024 pooled germ cell tumors Gene SLMO1, variant not shown         Submitted on the opposite strand    
AW294931   Gene SLMO1, variant not shown         Submitted on the opposite strand    
BF061881 pooled germ cell tumors Gene SLMO1, variant not shown         Submitted on the opposite strand    
BE731155 choriocarcinoma, placenta Gene SLMO1, variant not shown         This clone was ignored    
BG763261 melanotic melanoma, high MDR (cell line), skin Gene SLMO1, variant not shown         This clone was ignored    
BI757289 brain Gene SLMO1, variant not shown         This clone was ignored    
TI_57221596   Gene SLMO1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C