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Gene TTC39CTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
219 supporting clones for gene TTC39C back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB004856 breast, tumor tissue .a 1 to 425 2 to 426   tiling clone, capped   425/425
(100 %)
0 diff
(100 %id)
NM_001135993.1   .a 188 to 5426 1 to 5239   RefSeq, AAA   5239/5239
(100 %)
1 diff
(100.0 %id)
BE222321 carcinoid, lung .a 336 to 686 1 to 354     Submitted on the opposite strand 354/415
(85 %)
18 diff
(95.7 %id)
DB455957 testis .a 404 to 900 1 to 497   tiling clone,   497/497
(100 %)
0 diff
(100 %id)
DR007016 Spleen .a 532 to 1277 20 to 766       747/766
(97 %)
9 diff
(98.9 %id)
BQ949503 large cell carcinoma, lung .a 535 to 1350 1 to 824       824/950
(86 %)
70 diff
(92.7 %id)
AW976358   .a 660 to 1340 7 to 687       681/687
(99 %)
5 diff
(99.3 %id)
AI807087 pooled .a 666 to 1254 1 to 589     Submitted on the opposite strand 589/589
(100 %)
8 diff
(98.7 %id)
BE549529 carcinoid, lung .a 680 to 1244 1 to 566     Submitted on the opposite strand 566/566
(100 %)
2 diff
(99.7 %id)
AA424573 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 681 to 1122 1 to 436     Submitted on the opposite strand 436/436
(100 %)
9 diff
(98.0 %id)
AI419841 pooled .a 681 to 1178 1 to 498     Submitted on the opposite strand 498/498
(100 %)
0 diff
(100 %id)
AW271548 Kidney .a 681 to 1178 1 to 498     Submitted on the opposite strand 498/498
(100 %)
0 diff
(100 %id)
AW592539 pooled .a 681 to 1178 1 to 498     Submitted on the opposite strand 498/498
(100 %)
0 diff
(100 %id)
AA873728 pooled germ cell tumors .a 710 to 958 49 to 296     Submitted on the opposite strand 248/296
(83 %)
6 diff
(98.0 %id)
AA770475 pooled .a 743 to 1147 1 to 405     Submitted on the opposite strand 405/405
(100 %)
3 diff
(99.3 %id)
AA742969 germinal center B cell .a 747 to 986 1 to 240     Submitted on the opposite strand 240/250
(96 %)
4 diff
(98.4 %id)
BX280051 embryonal carcinoma, cell line, testis .a 750 to 1233 1 to 484       484/484
(100 %)
0 diff
(100 %id)
BC032684 Testis, embryonal carcinoma .a 750 to 2844 12 to 2106   tiling clone, available from MGC, AAA   2095/2095
(100 %)
1 diff
(100.0 %id)
BM454447 embryonal carcinoma, cell line, testis .a 750 to 1514 1 to 767   available from MGC,   767/1038
(73 %)
17 diff
(98.4 %id)
DB335263 breast, tumor tissue .a 1904 to 2458 557 to 1       557/557
(100 %)
3 diff
(99.5 %id)
AK091080 corpus callosum .b 1 to 2303 2 to 2304 E149G E201V tiling clone, available from FLJ,   2304/2304
(100 %)
3 diff
(99.9 %id)
AX746769   .b 1 to 2303 2 to 2304 E149G E201V     2304/2304
(100 %)
3 diff
(99.9 %id)
NM_153211.3   .b 1 to 4885 2 to 4886 exact RefSeq, AAA   4886/4886
(100 %)
1 diff
(100.0 %id)
DA273849 corpus callosum .b 1 to 557 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
CD697204 normal nasopharynx .b 27 to 486 33 to 497       465/497
(93 %)
14 diff
(97.2 %id)
BC121034 PCR rescued clones .b 117 to 2167 1 to 2051 exact tiling clone,   2051/2051
(100 %)
1 diff
(100.0 %id)
BC121035 PCR rescued clones .b 117 to 2167 1 to 2051 exact     2051/2051
(100 %)
1 diff
(100.0 %id)
CB123396 Liver .b 421 to 584 1 to 164       164/164
(100 %)
0 diff
(100 %id)
DA138329 alzheimer cortex .b 428 to 968 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
AW501010 lymph .b 438 to 874 1 to 437       437/437
(100 %)
3 diff
(99.4 %id)
AW501128 lymph .b 438 to 860 1 to 423       423/423
(100 %)
5 diff
(98.9 %id)
TI_154155514   .b 442 to 894 77 to 529       453/453
(100 %)
0 diff
(100 %id)
TI_154155717   .b 442 to 879 77 to 514       438/439
(99 %)
4 diff
(99.1 %id)
BM798138 Ascites, stomach .b 491 to 965 1 to 475       475/475
(100 %)
0 diff
(100 %id)
FN143466 breast carcinoma .b 595 to 686 94 to 1     Submitted on the opposite strand 94/94
(100 %)
2 diff
(97.9 %id)
BX353872 Neuroblastoma Cot 25-normalized .b 773 to 1889 1110 to 2     Submitted on the opposite strand 1109/1149
(96 %)
14 diff
(98.8 %id)
CR735266 blood, natural killer cells, cell line .b 1061 to 1516 38 to 493       456/497
(91 %)
7 diff
(98.6 %id)
BQ052579 blood, natural killer cells, cell line .b 1062 to 1918 1 to 857       857/1032
(83 %)
13 diff
(98.8 %id)
BM704078 eye, Retina Foveal and Macular .b 1228 to 1706 1 to 479       479/479
(100 %)
1 diff
(99.8 %id)
AV686983 hepatocellular carcinoma .b 1366 to 2114 1 to 744       744/759
(98 %)
18 diff
(97.7 %id)
BP394831 pancreatic islet .b 1404 to 1903 1 to 500     Submitted on the opposite strand 500/500
(100 %)
1 diff
(99.8 %id)
AW961968   .b 1417 to 1989 583 to 11     Submitted on the opposite strand 573/585
(97 %)
4 diff
(99.4 %id)
DB521377 testis .b 1453 to 1917 1 to 465     Submitted on the opposite strand 465/465
(100 %)
1 diff
(99.8 %id)
BQ015255 Chondrosarcoma, Left Pubic Bone .b 1493 to 2165 691 to 19   AAA   673/673
(100 %)
1 diff
(99.9 %id)
FN105623 breast carcinoma .b 1530 to 1602 1 to 73       73/73
(100 %)
1 diff
(98.7 %id)
AA004250 liver and spleen .b 1532 to 1899 1 to 369       369/373
(98 %)
3 diff
(99.2 %id)
CR738283 liver and spleen .b 1538 to 2279 1 to 742       742/742
(100 %)
1 diff
(99.9 %id)
H72674 liver and spleen .b 1539 to 1930 1 to 398   fully sequenced,   398/398
(100 %)
7 diff
(98.3 %id)
AW796868 uterus .b 1568 to 1750 361 to 179       183/362
(50 %)
1 diff
(99.8 %id)
AV658479 corresponding non cancerous liver tissue .b 1612 to 1915 27 to 330     Submitted on the opposite strand 304/613
(49 %)
7 diff
(98.9 %id)
AV658573 corresponding non cancerous liver tissue .b 1612 to 1917 27 to 332   AAA Submitted on the opposite strand 306/332
(92 %)
7 diff
(97.9 %id)
AV659105 corresponding non cancerous liver tissue .b 1612 to 1917 27 to 332   AAA Submitted on the opposite strand 306/332
(92 %)
6 diff
(98.2 %id)
CR985913 T-Lymphocytes .b 1653 to 1964 1 to 312       312/313
(99 %)
2 diff
(99.4 %id)
BG925294 cartilage .b 1696 to 2308 85 to 697   AAA   613/629
(97 %)
6 diff
(99.1 %id)
T08315   .b 1723 to 1989 269 to 1     Submitted on the opposite strand 269/269
(100 %)
3 diff
(98.9 %id)
DB307115 corpus callosum .b 1744 to 2303 561 to 1       561/561
(100 %)
1 diff
(99.9 %id)
AA699932 liver and spleen .b 1815 to 2314 500 to 1       500/500
(100 %)
1 diff
(99.8 %id)
BU729989 eye, Retina Foveal and Macular .b 1835 to 2308 492 to 19   AAA   474/474
(100 %)
1 diff
(99.8 %id)
AA761228 germinal center B cell .b 1840 to 2160 359 to 38   AAA   322/322
(100 %)
3 diff
(99.1 %id)
BF061529 pooled .b 1844 to 2309 471 to 6       466/471
(98 %)
0 diff
(100 %id)
AA766036 germinal center B cell .b 1846 to 2160 355 to 41   AAA   315/315
(100 %)
1 diff
(99.7 %id)
AA761066 germinal center B cell .b 1869 to 2160 331 to 40   AAA   292/292
(100 %)
1 diff
(99.7 %id)
AI083582 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1892 to 2308 417 to 1       417/417
(100 %)
8 diff
(98.1 %id)
H72675 liver and spleen .b 1900 to 2274 389 to 1   fully sequenced,   389/389
(100 %)
25 diff
(93.6 %id)
AA676904 liver and spleen .b 1929 to 2303 375 to 1       375/375
(100 %)
2 diff
(99.5 %id)
AI240821 liver and spleen .b 1929 to 2314 386 to 1       386/386
(100 %)
2 diff
(99.5 %id)
FN159100 breast carcinoma .b 1935 to 2012 77 to 1     Submitted on the opposite strand 77/77
(100 %)
4 diff
(94.9 %id)
AA004669 liver and spleen .b 1958 to 2301 348 to 1       348/447
(77 %)
7 diff
(98.5 %id)
BX956159   .b 2067 to 2314 1 to 248   AAA   248/248
(100 %)
0 diff
(100 %id)
BX478505   .b 2078 to 2737 1 to 660   tiling clone,   660/660
(100 %)
0 diff
(100 %id)
AK296442 thalamus .c 1 to 1666 1 to 1666 I102V tiling clone,   1666/1666
(100 %)
2 diff
(99.9 %id)
DC343384 thalamus .c 1 to 572 1 to 572       572/572
(100 %)
1 diff
(99.9 %id)
DA162532 amygdala .c 1582 to 1795 2 to 215   tiling clone, capped   214/214
(100 %)
0 diff
(100 %id)
FN080106 breast carcinoma .c 2226 to 2299 11 to 85   tiling clone,   75/86
(87 %)
2 diff
(97.7 %id)
BQ710436 Spleen .c 2780 to 3672 18 to 925   tiling clone,   908/930
(97 %)
24 diff
(97.5 %id)
AA948239 pooled germ cell tumors .c 3072 to 3333 270 to 9       262/270
(97 %)
0 diff
(100 %id)
BF380557 uterus_tumor .c 3238 to 3465 225 to 3       223/233
(95 %)
0 diff
(100 %id)
BF380565 uterus_tumor .c 3238 to 3455 214 to 1       214/222
(96 %)
8 diff
(96.4 %id)
CV418773 uterus_tumor .c 3238 to 3487 261 to 20     Submitted on the opposite strand 242/269
(89 %)
0 diff
(100 %id)
CV418831 uterus_tumor .c 3238 to 3485 253 to 10     Submitted on the opposite strand 244/261
(93 %)
0 diff
(100 %id)
CV418845 uterus_tumor .c 3238 to 3478 242 to 6     Submitted on the opposite strand 237/250
(94 %)
0 diff
(100 %id)
CV418847 uterus_tumor .c 3238 to 3478 239 to 6     Submitted on the opposite strand 234/247
(94 %)
0 diff
(100 %id)
AW999368 breast_normal .c 3266 to 3486 240 to 18     Submitted on the opposite strand 223/240
(92 %)
0 diff
(100 %id)
CV418825 uterus_tumor .c 3272 to 3485 16 to 231       216/235
(91 %)
6 diff
(97.5 %id)
CV418822 uterus_tumor .c 3274 to 3485 1 to 211       211/215
(98 %)
6 diff
(97.3 %id)
CA426171 Bone, Subchondral Bone .c 3364 to 4116 769 to 19   tiling clone, AAA   751/762
(98 %)
1 diff
(99.9 %id)
AI268838 carcinoid, lung .c 3474 to 3908 1 to 436     Submitted on the opposite strand 436/436
(100 %)
5 diff
(98.9 %id)
BM069797 Islets of Langerhans, Pancreas .c 3591 to 4097 1 to 507       507/507
(100 %)
2 diff
(99.7 %id)
DB302225 amygdala .c 3613 to 4106 494 to 1       494/494
(100 %)
4 diff
(99.2 %id)
AA654564   .c 3629 to 3998 13 to 382       370/382
(96 %)
7 diff
(98.2 %id)
AI221741 pooled .c 3721 to 4104 389 to 5       385/389
(98 %)
0 diff
(100 %id)
AI619998 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 3762 to 4102 369 to 30   AAA   340/340
(100 %)
10 diff
(97.1 %id)
BM714250 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3800 to 4102 1 to 303   AAA   303/303
(100 %)
6 diff
(98.1 %id)
BU608252 Human Lung Epithelial cells, lung .c 3808 to 4106 317 to 19   AAA   299/353
(84 %)
0 diff
(100 %id)
T03922   .c 3812 to 4107 299 to 3       297/299
(99 %)
0 diff
(100 %id)
AI871745 carcinoid, lung .c 3820 to 4361 1 to 542   tiling clone, Submitted on the opposite strand 542/542
(100 %)
2 diff
(99.7 %id)
AA714039 germinal center B cell .c 3888 to 4109 260 to 39   AAA   222/222
(100 %)
0 diff
(100 %id)
AW803247 uterus .c 3931 to 4280 10 to 359       350/368
(95 %)
13 diff
(96.5 %id)
BG272671 head/neck, nasopharyngeal carcinoma .c 3957 to 4104 151 to 4       148/151
(98 %)
0 diff
(100 %id)
AF363068 lung carcinoma .c 3968 to 4336 369 to 1     Submitted on the opposite strand 369/566
(65 %)
5 diff
(99.2 %id)
C20675   .c 4186 to 4435 1 to 250   tiling clone,   250/250
(100 %)
0 diff
(100 %id)
FN130108 breast carcinoma .c 4294 to 4392 1 to 94       94/109
(86 %)
6 diff
(94.5 %id)
F12949 brain, total brain .d 1 to 349 1 to 349       349/351
(99 %)
4 diff
(98.9 %id)
F13040 brain, total brain .d 1 to 364 1 to 364   tiling clone, to resequence,   364/364
(100 %)
3 diff
(99.2 %id)
T77004 whole brain .d 32 to 584 1 to 565   tiling clone,   565/568
(99 %)
29 diff
(94.9 %id)
T75185 whole brain .d 89 to 311 1 to 223       223/223
(100 %)
3 diff
(98.7 %id)
R38630 whole brain .d 850 to 1361 530 to 1   tiling clone,   530/530
(100 %)
29 diff
(94.6 %id)
R38087 whole brain .d 1031 to 1362 340 to 1   tiling clone,   340/380
(89 %)
7 diff
(98.2 %id)
F10548 brain, total brain .d 1049 to 1348 300 to 1   tiling clone,   300/300
(100 %)
0 diff
(100 %id)
F10632 brain, total brain .d 1077 to 1348 272 to 1   to resequence,   272/272
(100 %)
0 diff
(100 %id)
BC016833 Ovary, adenocarcinoma .e 1 to 1047 1 to 1047 exact available from MGC, AAA   1047/1047
(100 %)
1 diff
(100.0 %id)
NR_024232.1   .e 1 to 1047 1 to 1047 exact RefSeq, tiling clone, AAA   1047/1047
(100 %)
0 diff
(100 %id)
CA430785 cell lines, Chondrosarcoma .e 330 to 1046 735 to 19   AAA   717/717
(100 %)
1 diff
(99.9 %id)
AK074875   .e 379 to 1047 1 to 669   available from FLJ,   669/669
(100 %)
2 diff
(99.8 %id)
DA734643   .e 380 to 665 2 to 287   fully sequenced, capped   286/286
(100 %)
0 diff
(100 %id)
BU620182 cell lines, Chondrosarcoma .e 381 to 1046 685 to 19   AAA   667/667
(100 %)
3 diff
(99.6 %id)
BU623171 cell lines, Chondrosarcoma .e 421 to 1046 644 to 19   AAA   626/626
(100 %)
2 diff
(99.7 %id)
BE673679 carcinoid, lung .e 472 to 1014 1 to 543     Submitted on the opposite strand 543/543
(100 %)
1 diff
(99.9 %id)
BE674575 carcinoid, lung .e 472 to 955 1 to 484     Submitted on the opposite strand 484/484
(100 %)
1 diff
(99.8 %id)
BF433075 carcinoid, lung .e 472 to 1045 1 to 574     Submitted on the opposite strand 574/593
(96 %)
2 diff
(99.7 %id)
BF108457 carcinoid, lung .e 472 to 901 1 to 430     Submitted on the opposite strand 430/430
(100 %)
1 diff
(99.8 %id)
BF197725 carcinoid, lung .e 472 to 943 1 to 472     Submitted on the opposite strand 472/472
(100 %)
1 diff
(99.8 %id)
AA410446 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 473 to 920 1 to 448     Submitted on the opposite strand 448/448
(100 %)
13 diff
(97.1 %id)
AA972636 carcinoid, lung .e 473 to 912 1 to 435     Submitted on the opposite strand 435/435
(100 %)
7 diff
(98.4 %id)
AI696060 pooled germ cell tumors .e 473 to 947 1 to 475     Submitted on the opposite strand 475/475
(100 %)
1 diff
(99.8 %id)
AI801957 carcinoid, lung .e 473 to 989 1 to 517     Submitted on the opposite strand 517/517
(100 %)
1 diff
(99.9 %id)
AI681193 carcinoid, lung .e 473 to 979 1 to 500     Submitted on the opposite strand 500/502
(99 %)
10 diff
(98.1 %id)
BE217897 carcinoid, lung .e 473 to 1015 1 to 543     Submitted on the opposite strand 543/543
(100 %)
1 diff
(99.9 %id)
BE219161 carcinoid, lung .e 473 to 986 1 to 514     Submitted on the opposite strand 514/514
(100 %)
1 diff
(99.9 %id)
BE326333 carcinoid, lung .e 473 to 955 1 to 483     Submitted on the opposite strand 483/483
(100 %)
0 diff
(100 %id)
BE327092 carcinoid, lung .e 473 to 1026 1 to 554     Submitted on the opposite strand 554/554
(100 %)
1 diff
(99.9 %id)
BF057123 pooled germ cell tumors .e 473 to 956 1 to 484     Submitted on the opposite strand 484/484
(100 %)
0 diff
(100 %id)
BF058122 fibrotheoma, ovary .e 473 to 942 1 to 470     Submitted on the opposite strand 470/470
(100 %)
2 diff
(99.6 %id)
TI_153991046   .e 473 to 927 58 to 512     Submitted on the opposite strand 455/512
(88 %)
12 diff
(97.7 %id)
AW015071   .e 474 to 733 1 to 260     Submitted on the opposite strand 260/260
(100 %)
7 diff
(97.4 %id)
AW015583   .e 474 to 957 1 to 484     Submitted on the opposite strand 484/484
(100 %)
1 diff
(99.8 %id)
AW016152   .e 474 to 671 1 to 198     Submitted on the opposite strand 198/198
(100 %)
0 diff
(100 %id)
AW138334   .e 474 to 772 1 to 299     Submitted on the opposite strand 299/299
(100 %)
1 diff
(99.7 %id)
AW138149   .e 474 to 865 1 to 392     Submitted on the opposite strand 392/392
(100 %)
2 diff
(99.5 %id)
AW139596   .e 474 to 991 1 to 518     Submitted on the opposite strand 518/518
(100 %)
2 diff
(99.7 %id)
AW206969   .e 474 to 872 1 to 399     Submitted on the opposite strand 399/399
(100 %)
4 diff
(99.0 %id)
BE465341 carcinoid, lung .e 474 to 1048 1 to 575     Submitted on the opposite strand 575/578
(99 %)
1 diff
(99.9 %id)
BE222387 carcinoid, lung .e 475 to 843 1 to 369     Submitted on the opposite strand 369/369
(100 %)
0 diff
(100 %id)
W72622 heart .e 479 to 952 7 to 488     Submitted on the opposite strand 482/493
(97 %)
23 diff
(95.4 %id)
AI827183 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 488 to 763 1 to 276     Submitted on the opposite strand 276/276
(100 %)
5 diff
(98.2 %id)
AW968939   .e 490 to 1024 1 to 534       534/534
(100 %)
2 diff
(99.7 %id)
AA987961 carcinoid, lung .e 490 to 991 1 to 497     Submitted on the opposite strand 497/497
(100 %)
3 diff
(99.4 %id)
BE328182 carcinoid, lung .e 491 to 839 1 to 349     Submitted on the opposite strand 349/349
(100 %)
3 diff
(99.2 %id)
BE467775 carcinoid, lung .e 491 to 843 1 to 353     Submitted on the opposite strand 353/353
(100 %)
0 diff
(100 %id)
BG150505 carcinoid, lung .e 493 to 818 1 to 326     Submitted on the opposite strand 326/326
(100 %)
0 diff
(100 %id)
AI298733 carcinoid, lung .e 494 to 963 1 to 470     Submitted on the opposite strand 470/470
(100 %)
0 diff
(100 %id)
AI350132 carcinoid, lung .e 494 to 926 1 to 430     Submitted on the opposite strand 430/430
(100 %)
5 diff
(98.9 %id)
AI334306 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 494 to 971 1 to 478     Submitted on the opposite strand 478/478
(100 %)
0 diff
(100 %id)
AI475742 B-cell, chronic lymphotic leukemia .e 494 to 962 1 to 469     Submitted on the opposite strand 469/469
(100 %)
0 diff
(100 %id)
AI523823 B-cell, chronic lymphotic leukemia .e 494 to 987 1 to 494     Submitted on the opposite strand 494/494
(100 %)
0 diff
(100 %id)
AI632691 Kidney .e 494 to 840 1 to 347     Submitted on the opposite strand 347/347
(100 %)
0 diff
(100 %id)
AI767968 2 pooled tumors (clear cell type), Kidney .e 494 to 978 1 to 484     Submitted on the opposite strand 484/484
(100 %)
4 diff
(99.2 %id)
AI985561 Kidney .e 494 to 966 1 to 472     Submitted on the opposite strand 472/472
(100 %)
2 diff
(99.6 %id)
AW004849 colon .e 494 to 1039 1 to 541     Submitted on the opposite strand 541/562
(96 %)
28 diff
(95.1 %id)
AW149586 brain, medulloblastoma .e 494 to 985 1 to 494     Submitted on the opposite strand 494/494
(100 %)
4 diff
(99.2 %id)
AW167659 cervix .e 494 to 937 1 to 444     Submitted on the opposite strand 444/444
(100 %)
0 diff
(100 %id)
AW470336 carcinoid, lung .e 494 to 836 1 to 343     Submitted on the opposite strand 343/347
(98 %)
4 diff
(98.9 %id)
AW612284 carcinoid, lung .e 494 to 747 1 to 254     Submitted on the opposite strand 254/254
(100 %)
1 diff
(99.7 %id)
AW052123 Kidney .e 495 to 952 1 to 458     Submitted on the opposite strand 458/458
(100 %)
3 diff
(99.4 %id)
AA947936 carcinoid, lung .e 498 to 982 1 to 483     Submitted on the opposite strand 483/483
(100 %)
6 diff
(98.8 %id)
AI701287 Prostate .e 499 to 753 7 to 261     Submitted on the opposite strand 255/261
(97 %)
0 diff
(100 %id)
BM701431 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 507 to 946 1 to 439       439/448
(97 %)
1 diff
(99.8 %id)
AI693271 carcinoid, lung .e 517 to 968 1 to 453     Submitted on the opposite strand 453/453
(100 %)
1 diff
(99.8 %id)
BG149174 carcinoid, lung .e 519 to 973 1 to 455     Submitted on the opposite strand 455/455
(100 %)
2 diff
(99.6 %id)
AA826395 carcinoid, lung .e 525 to 878 1 to 354     Submitted on the opposite strand 354/354
(100 %)
6 diff
(98.4 %id)
AA488904 germinal center B cell .e 545 to 868 1 to 323     Submitted on the opposite strand 323/323
(100 %)
2 diff
(99.4 %id)
BF477582 carcinoid, lung .e 545 to 1015 1 to 471     Submitted on the opposite strand 471/471
(100 %)
1 diff
(99.8 %id)
AA806974 germinal center B cell .e 553 to 980 1 to 428     Submitted on the opposite strand 428/434
(98 %)
7 diff
(98.4 %id)
AA393060   .e 575 to 827 1 to 251   fully sequenced,   251/251
(100 %)
1 diff
(99.7 %id)
AA406435 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 580 to 1047 467 to 1     Submitted on the opposite strand 467/468
(99 %)
2 diff
(99.6 %id)
W76531 heart .e 629 to 1048 424 to 5     Submitted on the opposite strand 420/424
(99 %)
0 diff
(100 %id)
DB366767   .e 635 to 1047 413 to 1   fully sequenced,   413/413
(100 %)
1 diff
(99.8 %id)
AW196785 pooled germ cell tumors .e 660 to 1048 393 to 5       389/393
(98 %)
0 diff
(100 %id)
BG171503 hypernephroma, cell line, Kidney .e 746 to 1047 1 to 302   AAA   302/302
(100 %)
0 diff
(100 %id)
GD158333   .e 772 to 888 1 to 116       116/118
(98 %)
6 diff
(95.0 %id)
AA488973 germinal center B cell .e 776 to 1021 246 to 1     Submitted on the opposite strand 246/246
(100 %)
0 diff
(100 %id)
AA398611   .e 797 to 1050 254 to 1   fully sequenced,   254/254
(100 %)
3 diff
(98.9 %id)
AW003831 pooled germ cell tumors .e 891 to 1057 195 to 29   AAA   167/167
(100 %)
4 diff
(97.7 %id)
AV646121 corresponding non cancerous liver tissue .f 1 to 634 1 to 634   tiling clone, Submitted on the opposite strand 634/634
(100 %)
2 diff
(99.7 %id)
AV646138 corresponding non cancerous liver tissue .f 1 to 634 1 to 634     Submitted on the opposite strand 634/634
(100 %)
2 diff
(99.7 %id)
BM917907 blood, natural killer cells, cell line .f 127 to 772 692 to 44 D2G G3W Q5T I6D V7F ... AAA Submitted on the opposite strand 649/1042
(62 %)
18 diff
(98.3 %id)
BF700169 brain, primitive neuroectoderm .f 203 to 645 1 to 439       439/439
(100 %)
7 diff
(98.5 %id)
BU629907 cell lines, Chondrosarcoma .f 203 to 861 675 to 19   tiling clone, AAA   657/657
(100 %)
3 diff
(99.6 %id)
AI538436 B-cell, chronic lymphotic leukemia .g 1 to 499 1 to 499 exact tiling clone, Submitted on the opposite strand 499/499
(100 %)
0 diff
(100 %id)
BI024374 marrow .g 309 to 662 1 to 353   tiling clone,   353/353
(100 %)
7 diff
(98.1 %id)
BI028153 marrow .g 320 to 688 1 to 375   tiling clone,   375/375
(100 %)
21 diff
(94.4 %id)
BI022041 marrow .g 486 to 896 438 to 26   tiling clone,   413/438
(94 %)
13 diff
(97.1 %id)
BM715395 eye, human retina .g 865 to 1586 1 to 716   tiling clone,   716/716
(100 %)
7 diff
(99.1 %id)
CD707705 normal nasopharynx .h 1 to 416 35 to 451 M22N Q23A L24V A25G C26M ... tiling clone,   417/451
(92 %)
9 diff
(98.1 %id)
BG674566 skin .i-u 1 to 939 17 to 960 T47I tiling clone,   944/962
(98 %)
34 diff
(96.5 %id)
AI700034 pooled germ cell tumors .i-u 844 to 1210 367 to 1   tiling clone,   367/372
(98 %)
2 diff
(99.5 %id)
AA121683 lung, lung carcinoma .i-u 893 to 1204 1 to 312   fully sequenced,   312/312
(100 %)
1 diff
(99.7 %id)
AA129529 lung, lung carcinoma .i-u 1008 to 1206 198 to 1   fully sequenced,   198/198
(100 %)
2 diff
(99.0 %id)
AV706762 adrenal gland .j-u 1 to 740 1 to 737   tiling clone,   737/742
(99 %)
29 diff
(96.1 %id)
DB187387 liver, tumor tissue .j-u 204 to 767 2 to 565   tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
BM695746 eye, optic nerve .j-u 216 to 830 1 to 615 exact     615/615
(100 %)
1 diff
(99.9 %id)
TI_151702280   .j-u 305 to 1182 912 to 38 L3X tiling clone,   875/1065
(82 %)
0 diff
(100 %id)
AA682991 schizophrenic brain S-11 frontal lobe .j-u 325 to 746 422 to 1       422/422
(100 %)
2 diff
(99.6 %id)
BU594268 mixed (pool of 40 RNAs) .k-u 1 to 645 1 to 654 exact tiling clone,   654/799
(81 %)
31 diff
(96.2 %id)
AV684984 hepatocellular carcinoma .l-u 1 to 610 1 to 609 R11K R12K I13N L14I E15G ... tiling clone,   609/634
(96 %)
6 diff
(99.1 %id)
AV697545 hepatocellular carcinoma .l-u 1 to 614 1 to 615 R11K R12K I13N L14I E15G ... tiling clone,   615/635
(96 %)
10 diff
(98.5 %id)
N66859 liver and spleen .l-u 134 to 556 1 to 424   tiling clone, Submitted on the opposite strand 424/424
(100 %)
1 diff
(99.8 %id)
CD522953 pooled .m 1 to 535 1 to 535 exact tiling clone,   535/570
(93 %)
4 diff
(99.3 %id)
DA400603 thalamus .n-u 1 to 521 2 to 522 exact tiling clone, capped   521/521
(100 %)
1 diff
(99.9 %id)
BX955654   .o 1 to 514 1 to 514 exact tiling clone,   514/514
(100 %)
5 diff
(99.1 %id)
AA424670 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .p 1 to 475 480 to 6 exact tiling clone, Submitted on the opposite strand 475/480
(98 %)
0 diff
(100 %id)
BM930384 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .p 103 to 436 1 to 334   fully sequenced, AAA   334/334
(100 %)
0 diff
(100 %id)
BM683843 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .p 355 to 436 100 to 19   fully sequenced, AAA   82/82
(100 %)
0 diff
(100 %id)
AV683433 hepatocellular carcinoma .q 1 to 354 1 to 355 exact tiling clone,   355/381
(93 %)
3 diff
(99.3 %id)
AV685441 hepatocellular carcinoma .q 1 to 354 1 to 355 exact     355/381
(93 %)
3 diff
(99.3 %id)
AV694606 hepatocellular carcinoma .q 1 to 354 1 to 355 exact     355/381
(93 %)
3 diff
(99.3 %id)
AV707357 adrenal gland Gene TTC39C, variant not shown         This clone was ignored    
DB312992 colon Gene TTC39C, variant not shown              
DA426932 colon Gene TTC39C, variant not shown       capped      
AL702550 human skeletal muscle Gene TTC39C, variant not shown              
AV695833 hepatocellular carcinoma Gene TTC39C, variant not shown         Suspected internal deletion, this clone was ignored    
AV646230 corresponding non cancerous liver tissue Gene TTC39C, variant not shown         Submitted on the opposite strand    
AV646353 corresponding non cancerous liver tissue Gene TTC39C, variant not shown         Submitted on the opposite strand    
AV656442 corresponding non cancerous liver tissue Gene TTC39C, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV660130 corresponding non cancerous liver tissue Gene TTC39C, variant not shown         Submitted on the opposite strand    
AV660261 corresponding non cancerous liver tissue Gene TTC39C, variant not shown         Submitted on the opposite strand    
AV660299 corresponding non cancerous liver tissue Gene TTC39C, variant not shown         Submitted on the opposite strand    
R00934 liver and spleen Gene TTC39C, variant not shown         This clone was ignored    
R02175 liver and spleen Gene TTC39C, variant not shown         This clone was ignored    
H49354 liver and spleen Gene TTC39C, variant not shown         This clone was ignored    
H49355 liver and spleen Gene TTC39C, variant not shown         This clone was ignored    
AA806102 germinal center B cell Gene TTC39C, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AI458717 carcinoid, lung Gene TTC39C, variant not shown         Submitted on the opposite strand    
BG575748 breast, mammary adenocarcinoma, cell line Gene TTC39C, variant not shown         This clone was ignored    
DB217172 trachea Gene TTC39C, variant not shown       capped      
DB349165 trachea Gene TTC39C, variant not shown              
W27156 eye, retina Gene TTC39C, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j-u, .k-u, .l-u, .m, .n-u, .o, .p, .q Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C